Wall clock time and date at job start Mon Mar 30 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47158 * 2 1 4 4 C 1.50701 * 109.46880 * 240.00239 * 2 1 3 5 5 O 1.21256 * 120.00083 * 259.99724 * 4 2 1 6 6 C 1.47169 * 120.00022 * 80.00310 * 4 2 1 7 7 C 1.39853 * 120.17028 * 179.97438 * 6 4 2 8 8 C 1.37893 * 119.82215 * 179.97438 * 7 6 4 9 9 C 1.38400 * 120.17171 * 0.02676 * 8 7 6 10 10 C 1.38409 * 120.35287 * 0.22916 * 9 8 7 11 11 C 1.37894 * 120.16856 * 359.48707 * 10 9 8 12 12 N 1.46895 * 109.46976 * 120.00593 * 2 1 3 13 13 C 1.46900 * 111.00083 * 267.04505 * 12 2 1 14 14 C 1.46900 * 111.00438 * 31.00013 * 12 2 1 15 15 H 1.09008 * 109.46996 * 306.72310 * 14 12 2 16 16 C 1.52997 * 109.47079 * 66.71873 * 14 12 2 17 17 C 1.50699 * 109.47568 * 186.72353 * 14 12 2 18 18 H 1.07998 * 119.99788 * 359.97438 * 17 14 12 19 19 C 1.37870 * 120.00181 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00345 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 120.00176 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47443 * 90.00008 * 21 19 17 23 23 H 1.48503 * 109.47259 * 210.00508 * 21 19 17 24 24 H 1.48499 * 109.47005 * 330.00239 * 21 19 17 25 25 H 1.08999 * 109.46964 * 294.54209 * 1 2 3 26 26 H 1.09001 * 109.46924 * 54.54836 * 1 2 3 27 27 H 1.09005 * 109.47028 * 174.54293 * 1 2 3 28 28 H 1.08000 * 120.09053 * 359.95892 * 7 6 4 29 29 H 1.07995 * 119.91488 * 180.02562 * 8 7 6 30 30 H 1.08004 * 119.82583 * 179.97438 * 9 8 7 31 31 H 1.07998 * 119.91494 * 179.72326 * 10 9 8 32 32 H 1.07996 * 120.08839 * 180.23250 * 11 10 9 33 33 H 1.09005 * 109.46932 * 59.99793 * 13 12 2 34 34 H 1.08995 * 109.47411 * 180.02562 * 13 12 2 35 35 H 1.08999 * 109.47178 * 300.00231 * 13 12 2 36 36 H 1.09001 * 109.47544 * 174.44323 * 16 14 12 37 37 H 1.09000 * 109.47299 * 294.44488 * 16 14 12 38 38 H 1.09005 * 109.47294 * 54.44481 * 16 14 12 39 39 H 0.96998 * 120.00536 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4064 -1.8614 -1.1559 6 6 2.0690 -0.0071 -2.5228 7 6 2.5350 -0.6627 -3.6668 8 6 2.5657 0.0030 -4.8741 9 6 2.1375 1.3165 -4.9552 10 6 1.6800 1.9740 -3.8264 11 6 1.6376 1.3202 -2.6130 12 7 2.0197 -0.6926 1.1993 13 6 2.2618 0.2570 2.2937 14 6 1.0869 -1.7485 1.6153 15 1 0.0869 -1.3281 1.7231 16 6 1.0639 -2.8542 0.5581 17 6 1.5349 -2.3236 2.9342 18 1 2.4239 -1.9432 3.4151 19 6 0.8104 -3.3362 3.5264 20 7 1.2016 -3.8385 4.6771 21 14 -0.7269 -3.9948 2.6942 22 1 -0.3606 -5.1192 1.7961 23 1 -1.6807 -4.4757 3.7258 24 1 -1.3615 -2.9129 1.8993 25 1 -0.3633 0.4269 0.9348 26 1 -0.3633 0.5961 -0.8372 27 1 -0.3633 -1.0231 -0.0977 28 1 2.8700 -1.6875 -3.6050 29 1 2.9248 -0.5020 -5.7586 30 1 2.1644 1.8327 -5.9035 31 1 1.3518 3.0005 -3.8969 32 1 1.2768 1.8333 -1.7339 33 1 1.3328 0.7705 2.5414 34 1 2.6240 -0.2820 3.1690 35 1 3.0087 0.9873 1.9824 36 1 0.4491 -3.6820 0.9114 37 1 0.6468 -2.4617 -0.3692 38 1 2.0797 -3.2068 0.3790 39 1 0.6917 -4.5507 5.0940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251713951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:03 Heat of formation + Delta-G solvation = 25.518910 kcal Electronic energy + Delta-G solvation = -20131.488972 eV Core-core repulsion = 17233.659406 eV Total energy + Delta-G solvation = -2897.829567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19720 -38.47939 -36.73070 -33.01897 -31.79454 -31.04872 -30.11673 -29.92528 -25.36806 -24.98011 -24.00447 -22.94313 -22.19308 -20.15313 -18.29080 -17.37672 -16.95711 -15.91870 -15.53977 -15.17044 -14.61876 -14.31780 -14.23682 -13.71581 -13.59129 -13.38967 -13.12157 -12.65988 -12.61457 -12.30031 -11.91484 -11.79534 -11.68678 -11.32918 -11.16834 -11.04848 -10.70110 -10.41981 -10.32898 -9.93228 -9.48685 -9.11743 -9.07904 -8.87086 -8.79962 -8.50950 -7.33016 -6.02473 -4.00445 0.72225 1.25089 2.66986 3.32535 3.40195 3.42431 3.78099 4.09379 4.44570 4.70666 4.78562 4.85756 4.92584 5.22834 5.29221 5.31270 5.35519 5.42634 5.53601 5.76647 5.82847 5.85742 6.01282 6.07777 6.22651 6.28807 6.31504 6.35316 6.39646 6.58417 6.69486 6.73745 6.77524 6.94112 6.99784 7.49533 7.61774 7.94278 8.04034 8.15414 8.68543 9.02389 9.59739 11.09964 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034189 B = 0.005517 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.779688 B = 5073.991646 C = 5331.828033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.039 3.961 3 H 0.091 0.909 4 C 0.388 3.612 5 O -0.409 6.409 6 C -0.152 4.152 7 C -0.067 4.067 8 C -0.133 4.133 9 C -0.100 4.100 10 C -0.134 4.134 11 C -0.078 4.078 12 N -0.515 5.515 13 C 0.035 3.965 14 C 0.177 3.823 15 H 0.007 0.993 16 C -0.134 4.134 17 C -0.508 4.508 18 H 0.084 0.916 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.270 1.270 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.015 0.985 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 12.397 -17.253 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.071 4.071 3 H 0.109 0.891 4 C 0.261 3.739 5 O -0.280 6.280 6 C -0.154 4.154 7 C -0.085 4.085 8 C -0.151 4.151 9 C -0.118 4.118 10 C -0.152 4.152 11 C -0.096 4.096 12 N -0.238 5.238 13 C -0.113 4.113 14 C 0.070 3.930 15 H 0.025 0.975 16 C -0.191 4.191 17 C -0.546 4.546 18 H 0.102 0.898 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.719 3.281 22 H -0.205 1.205 23 H -0.227 1.227 24 H -0.195 1.195 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.033 0.967 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.006 11.404 -17.156 20.601 hybrid contribution -1.637 0.011 -0.272 1.660 sum -1.643 11.415 -17.428 20.898 Atomic orbital electron populations 1.22384 0.95282 1.03658 1.02158 1.21959 0.94548 0.98014 0.92586 0.89146 1.22511 0.75608 0.87646 0.88096 1.90572 1.33215 1.17370 1.86876 1.20797 1.03209 0.95580 0.95796 1.21477 0.95259 1.00244 0.91570 1.21139 1.01159 0.95094 0.97753 1.21358 0.97144 0.94780 0.98510 1.21132 1.01136 1.00196 0.92762 1.21536 0.96393 0.93521 0.98172 1.61965 1.47267 1.11466 1.03129 1.22353 0.98356 0.94625 0.95985 1.19837 0.90137 0.88333 0.94671 0.97522 1.22388 1.02005 0.98323 0.96413 1.21076 1.12282 1.18962 1.02232 0.89799 1.24905 0.97278 0.96097 0.94784 1.69878 1.39779 1.27225 1.17057 0.86861 0.83322 0.79709 0.78241 1.20547 1.22714 1.19543 0.91278 0.92578 0.90784 0.84914 0.85670 0.85921 0.85646 0.85073 0.96673 0.89076 0.93694 0.95227 0.95579 0.90789 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 7.69 37.16 0.29 -2.51 16 2 C 0.04 0.66 1.88 -68.86 -0.13 0.53 16 3 H 0.09 1.27 6.58 -51.93 -0.34 0.93 16 4 C 0.39 6.66 5.66 -30.68 -0.17 6.48 16 5 O -0.41 -8.41 11.98 5.58 0.07 -8.35 16 6 C -0.15 -2.10 5.87 -105.06 -0.62 -2.72 16 7 C -0.07 -0.86 9.60 -39.10 -0.38 -1.23 16 8 C -0.13 -1.34 10.03 -39.65 -0.40 -1.74 16 9 C -0.10 -0.89 10.04 -39.46 -0.40 -1.28 16 10 C -0.13 -1.24 10.03 -39.64 -0.40 -1.63 16 11 C -0.08 -0.86 8.93 -39.10 -0.35 -1.21 16 12 N -0.51 -10.90 4.30 -229.69 -0.99 -11.89 16 13 C 0.03 0.67 9.04 60.06 0.54 1.21 16 14 C 0.18 4.31 1.16 -68.87 -0.08 4.23 16 15 H 0.01 0.18 4.84 -51.92 -0.25 -0.07 16 16 C -0.13 -3.25 6.65 37.16 0.25 -3.00 16 17 C -0.51 -14.44 8.48 -34.44 -0.29 -14.73 16 18 H 0.08 2.55 6.17 -52.49 -0.32 2.23 16 19 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 20 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 21 Si 0.89 22.74 24.41 -169.99 -4.15 18.59 16 22 H -0.28 -7.09 6.82 56.52 0.39 -6.70 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 24 H -0.27 -6.61 6.53 56.52 0.37 -6.24 16 25 H 0.07 1.10 7.50 -51.93 -0.39 0.71 16 26 H 0.06 0.70 7.25 -51.93 -0.38 0.32 16 27 H 0.07 1.35 5.05 -51.93 -0.26 1.09 16 28 H 0.13 1.73 7.65 -52.49 -0.40 1.33 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.25 6.09 -52.49 -0.32 0.93 16 33 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 34 H 0.09 1.99 5.74 -51.93 -0.30 1.69 16 35 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.03 0.74 3.21 -51.93 -0.17 0.57 16 37 H 0.03 0.57 4.39 -51.93 -0.23 0.34 16 38 H 0.07 1.89 6.83 -51.93 -0.35 1.54 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -32.59 295.48 -7.07 -39.66 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.00 Total: 0.26 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.23 Total: -15.63 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.21 Total: -38.99 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.35 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.15 Total: 18.59 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.59 -7.07 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251713951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.179 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds