Wall clock time and date at job start Mon Mar 30 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47158 * 2 1 4 4 C 1.50701 * 109.46880 * 240.00239 * 2 1 3 5 5 O 1.21256 * 120.00083 * 259.99724 * 4 2 1 6 6 C 1.47169 * 120.00022 * 80.00310 * 4 2 1 7 7 C 1.39853 * 120.17028 * 179.97438 * 6 4 2 8 8 C 1.37893 * 119.82215 * 179.97438 * 7 6 4 9 9 C 1.38400 * 120.17171 * 0.02676 * 8 7 6 10 10 C 1.38409 * 120.35287 * 0.22916 * 9 8 7 11 11 C 1.37894 * 120.16856 * 359.48707 * 10 9 8 12 12 N 1.46895 * 109.46976 * 120.00593 * 2 1 3 13 13 C 1.46900 * 111.00083 * 267.04505 * 12 2 1 14 14 C 1.46900 * 111.00438 * 31.00013 * 12 2 1 15 15 H 1.09008 * 109.46996 * 306.72310 * 14 12 2 16 16 C 1.52997 * 109.47079 * 66.71873 * 14 12 2 17 17 C 1.50699 * 109.47568 * 186.72353 * 14 12 2 18 18 H 1.07998 * 119.99788 * 359.97438 * 17 14 12 19 19 C 1.37870 * 120.00181 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00345 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 120.00176 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47443 * 90.00008 * 21 19 17 23 23 H 1.48503 * 109.47259 * 210.00508 * 21 19 17 24 24 H 1.48499 * 109.47005 * 330.00239 * 21 19 17 25 25 H 1.08999 * 109.46964 * 294.54209 * 1 2 3 26 26 H 1.09001 * 109.46924 * 54.54836 * 1 2 3 27 27 H 1.09005 * 109.47028 * 174.54293 * 1 2 3 28 28 H 1.08000 * 120.09053 * 359.95892 * 7 6 4 29 29 H 1.07995 * 119.91488 * 180.02562 * 8 7 6 30 30 H 1.08004 * 119.82583 * 179.97438 * 9 8 7 31 31 H 1.07998 * 119.91494 * 179.72326 * 10 9 8 32 32 H 1.07996 * 120.08839 * 180.23250 * 11 10 9 33 33 H 1.09005 * 109.46932 * 59.99793 * 13 12 2 34 34 H 1.08995 * 109.47411 * 180.02562 * 13 12 2 35 35 H 1.08999 * 109.47178 * 300.00231 * 13 12 2 36 36 H 1.09001 * 109.47544 * 174.44323 * 16 14 12 37 37 H 1.09000 * 109.47299 * 294.44488 * 16 14 12 38 38 H 1.09005 * 109.47294 * 54.44481 * 16 14 12 39 39 H 0.96998 * 120.00536 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4064 -1.8614 -1.1559 6 6 2.0690 -0.0071 -2.5228 7 6 2.5350 -0.6627 -3.6668 8 6 2.5657 0.0030 -4.8741 9 6 2.1375 1.3165 -4.9552 10 6 1.6800 1.9740 -3.8264 11 6 1.6376 1.3202 -2.6130 12 7 2.0197 -0.6926 1.1993 13 6 2.2618 0.2570 2.2937 14 6 1.0869 -1.7485 1.6153 15 1 0.0869 -1.3281 1.7231 16 6 1.0639 -2.8542 0.5581 17 6 1.5349 -2.3236 2.9342 18 1 2.4239 -1.9432 3.4151 19 6 0.8104 -3.3362 3.5264 20 7 1.2016 -3.8385 4.6771 21 14 -0.7269 -3.9948 2.6942 22 1 -0.3606 -5.1192 1.7961 23 1 -1.6807 -4.4757 3.7258 24 1 -1.3615 -2.9129 1.8993 25 1 -0.3633 0.4269 0.9348 26 1 -0.3633 0.5961 -0.8372 27 1 -0.3633 -1.0231 -0.0977 28 1 2.8700 -1.6875 -3.6050 29 1 2.9248 -0.5020 -5.7586 30 1 2.1644 1.8327 -5.9035 31 1 1.3518 3.0005 -3.8969 32 1 1.2768 1.8333 -1.7339 33 1 1.3328 0.7705 2.5414 34 1 2.6240 -0.2820 3.1690 35 1 3.0087 0.9873 1.9824 36 1 0.4491 -3.6820 0.9114 37 1 0.6468 -2.4617 -0.3692 38 1 2.0797 -3.2068 0.3790 39 1 0.6917 -4.5507 5.0940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251713951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:03 Heat of formation + Delta-G solvation = 3.346678 kcal Electronic energy + Delta-G solvation = -20132.450432 eV Core-core repulsion = 17233.659406 eV Total energy + Delta-G solvation = -2898.791027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44156 -39.53516 -38.22280 -34.98797 -33.16053 -31.94486 -31.82264 -31.17304 -27.13467 -26.50015 -25.55090 -24.06679 -23.21552 -21.56878 -19.77318 -18.96338 -18.43396 -17.31860 -16.77303 -16.54148 -15.92315 -15.82305 -15.46340 -15.20177 -14.92324 -14.71974 -14.38795 -14.27644 -13.97335 -13.75809 -13.37144 -13.23018 -12.94997 -12.81133 -12.56520 -12.48898 -12.21747 -12.10246 -11.90850 -11.77949 -11.39612 -10.98659 -10.74628 -10.28573 -9.89316 -9.85094 -8.95052 -8.29394 -6.31121 -0.20968 0.47839 1.28416 1.28930 1.40435 1.57300 2.29445 2.84498 2.93258 3.04831 3.41833 3.90259 4.05078 4.08595 4.17306 4.20381 4.33091 4.43892 4.53686 4.57999 4.60195 4.69245 4.70517 4.74489 4.85857 4.91842 4.97733 5.04540 5.12555 5.14992 5.27454 5.44641 5.52823 5.54675 5.57084 5.70540 5.99795 6.02346 6.36580 6.63683 6.75095 6.82918 7.33023 8.86430 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034189 B = 0.005517 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.779688 B = 5073.991646 C = 5331.828033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.035 3.965 3 H 0.127 0.873 4 C 0.389 3.611 5 O -0.462 6.462 6 C -0.179 4.179 7 C -0.087 4.087 8 C -0.136 4.136 9 C -0.089 4.089 10 C -0.131 4.131 11 C -0.077 4.077 12 N -0.538 5.538 13 C 0.039 3.961 14 C 0.186 3.814 15 H 0.011 0.989 16 C -0.122 4.122 17 C -0.510 4.510 18 H 0.049 0.951 19 C 0.016 3.984 20 N -0.947 5.947 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.249 1.249 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.018 0.982 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 15.422 -20.412 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.074 4.074 3 H 0.144 0.856 4 C 0.266 3.734 5 O -0.337 6.337 6 C -0.181 4.181 7 C -0.106 4.106 8 C -0.154 4.154 9 C -0.107 4.107 10 C -0.148 4.148 11 C -0.095 4.095 12 N -0.262 5.262 13 C -0.109 4.109 14 C 0.079 3.921 15 H 0.029 0.971 16 C -0.179 4.179 17 C -0.548 4.548 18 H 0.067 0.933 19 C -0.182 4.182 20 N -0.588 5.588 21 Si 0.772 3.228 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.173 1.173 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.442 14.470 -20.336 25.000 hybrid contribution -1.072 -0.784 0.614 1.463 sum -2.514 13.686 -19.721 24.136 Atomic orbital electron populations 1.22327 0.94092 1.02726 1.03853 1.22173 0.95561 0.99242 0.90435 0.85574 1.22947 0.73835 0.87061 0.89549 1.90557 1.36042 1.19409 1.87644 1.20566 1.06318 0.96964 0.94205 1.21510 0.96314 0.99945 0.92785 1.21412 1.00830 0.95900 0.97281 1.21831 0.94768 0.94037 1.00028 1.21558 0.99873 1.01572 0.91835 1.21754 0.95693 0.92200 0.99845 1.61797 1.47186 1.12256 1.04956 1.22286 0.99750 0.94413 0.94422 1.19585 0.90736 0.89384 0.92444 0.97131 1.22248 1.00488 0.97862 0.97332 1.21394 1.10862 1.18611 1.03914 0.93289 1.25692 1.00572 0.96570 0.95321 1.70016 1.41591 1.28326 1.18832 0.85924 0.79789 0.79596 0.77498 1.20429 1.22163 1.17316 0.91310 0.88612 0.93472 0.86788 0.83611 0.82487 0.82273 0.83371 0.95481 0.92825 0.90268 0.96367 0.93439 0.93090 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.98 7.69 71.98 0.55 -4.42 16 2 C 0.04 1.12 1.88 44.17 0.08 1.21 16 3 H 0.13 3.08 6.58 -2.39 -0.02 3.07 16 4 C 0.39 13.07 5.66 28.03 0.16 13.22 16 5 O -0.46 -19.51 11.98 -2.96 -0.04 -19.55 16 6 C -0.18 -4.62 5.87 -20.15 -0.12 -4.74 16 7 C -0.09 -2.14 9.60 22.58 0.22 -1.92 16 8 C -0.14 -2.34 10.03 22.23 0.22 -2.12 16 9 C -0.09 -1.15 10.04 22.35 0.22 -0.93 16 10 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16 11 C -0.08 -1.39 8.93 22.58 0.20 -1.19 16 12 N -0.54 -22.71 4.30 -880.59 -3.79 -26.50 16 13 C 0.04 1.48 9.04 127.69 1.15 2.64 16 14 C 0.19 9.15 1.16 44.17 0.05 9.20 16 15 H 0.01 0.55 4.84 -2.38 -0.01 0.53 16 16 C -0.12 -6.00 6.65 71.98 0.48 -5.52 16 17 C -0.51 -30.08 8.48 25.60 0.22 -29.86 16 18 H 0.05 3.17 6.17 -2.91 -0.02 3.15 16 19 C 0.02 0.94 5.45 84.65 0.46 1.40 16 20 N -0.95 -60.77 13.96 21.44 0.30 -60.47 16 21 Si 0.94 47.41 24.41 68.60 1.67 49.08 16 22 H -0.28 -13.80 6.82 99.48 0.68 -13.13 16 23 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 24 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 25 H 0.07 2.00 7.50 -2.39 -0.02 1.98 16 26 H 0.10 1.99 7.25 -2.39 -0.02 1.97 16 27 H 0.05 1.62 5.05 -2.38 -0.01 1.61 16 28 H 0.11 3.11 7.65 -2.91 -0.02 3.08 16 29 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 31 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.15 2.08 6.09 -2.91 -0.02 2.06 16 33 H 0.03 0.94 8.00 -2.38 -0.02 0.92 16 34 H 0.05 2.43 5.74 -2.39 -0.01 2.42 16 35 H 0.08 2.43 8.06 -2.39 -0.02 2.41 16 36 H 0.02 0.91 3.21 -2.39 -0.01 0.90 16 37 H 0.05 2.10 4.39 -2.39 -0.01 2.09 16 38 H 0.05 2.70 6.83 -2.38 -0.02 2.69 16 39 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -75.07 295.48 3.26 -71.81 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.98 Total: 10.15 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.13 Total: -24.53 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -3.49 Total: -86.97 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.04 Total: -19.55 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -75.07 3.26 -71.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251713951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.155 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds