Wall clock time and date at job start Mon Mar 30 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46748 * 240.00111 * 2 1 3 5 5 H 1.08004 * 119.99713 * 245.73849 * 4 2 1 6 6 C 1.37876 * 120.00090 * 65.74613 * 4 2 1 7 7 N 1.31514 * 120.00451 * 7.44654 * 6 4 2 8 8 Si 1.86799 * 119.99836 * 187.44865 * 6 4 2 9 9 H 1.48501 * 109.47047 * 94.97358 * 8 6 4 10 10 H 1.48498 * 109.47346 * 214.97189 * 8 6 4 11 11 H 1.48503 * 109.47152 * 334.97524 * 8 6 4 12 12 N 1.46892 * 109.47447 * 119.99855 * 2 1 3 13 13 C 1.46896 * 111.00214 * 176.04413 * 12 2 1 14 14 C 1.46902 * 111.00154 * 300.00129 * 12 2 1 15 15 H 1.09004 * 109.47267 * 45.64877 * 14 12 2 16 16 C 1.53000 * 109.46839 * 285.64791 * 14 12 2 17 17 C 1.50706 * 109.47250 * 165.64717 * 14 12 2 18 18 O 1.21254 * 120.00060 * 14.67836 * 17 14 12 19 19 C 1.47166 * 119.99989 * 194.67539 * 17 14 12 20 20 C 1.39851 * 120.16952 * 359.73160 * 19 17 14 21 21 C 1.37890 * 119.82380 * 179.74125 * 20 19 17 22 22 C 1.38406 * 120.16829 * 0.52718 * 21 20 19 23 23 C 1.38402 * 120.35308 * 359.72680 * 22 21 20 24 24 C 1.37896 * 120.17003 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47566 * 67.03532 * 1 2 3 26 26 H 1.09000 * 109.47393 * 187.03976 * 1 2 3 27 27 H 1.09007 * 109.47098 * 307.03780 * 1 2 3 28 28 H 0.96993 * 120.00256 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47246 * 52.42478 * 13 12 2 30 30 H 1.09004 * 109.47321 * 172.42514 * 13 12 2 31 31 H 1.09004 * 109.47219 * 292.42244 * 13 12 2 32 32 H 1.08999 * 109.46675 * 179.97438 * 16 14 12 33 33 H 1.08996 * 109.47329 * 299.99724 * 16 14 12 34 34 H 1.09003 * 109.47210 * 60.00192 * 16 14 12 35 35 H 1.07998 * 120.08799 * 359.97438 * 20 19 17 36 36 H 1.07998 * 119.91572 * 180.22972 * 21 20 19 37 37 H 1.08008 * 119.82742 * 179.69804 * 22 21 20 38 38 H 1.07996 * 119.92247 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.08959 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5746 -1.6394 -1.1341 6 6 1.7995 -0.1743 -2.4793 7 7 1.2708 1.0246 -2.5922 8 14 2.2353 -1.1509 -4.0109 9 1 1.0346 -1.8817 -4.4902 10 1 2.7068 -0.2244 -5.0712 11 1 3.3106 -2.1231 -3.6888 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0263 2.4210 15 1 0.4872 0.2019 2.3243 16 6 2.3325 1.2711 2.6290 17 6 1.7611 -0.9365 3.6033 18 8 2.4847 -1.9041 3.5012 19 6 1.0902 -0.6509 4.8816 20 6 0.2593 0.4672 5.0049 21 6 -0.3699 0.7251 6.2045 22 6 -0.1724 -0.1133 7.2879 23 6 0.6525 -1.2189 7.1754 24 6 1.2849 -1.4931 5.9810 25 1 -0.3634 0.4009 -0.9462 26 1 -0.3634 -1.0199 0.1259 27 1 -0.3634 0.6190 0.8204 28 1 1.1068 1.4015 -3.4707 29 1 3.9167 0.1930 1.0238 30 1 3.8300 -1.1883 2.1430 31 1 3.7959 -1.4639 0.3848 32 1 1.9827 1.7656 3.5352 33 1 3.3939 1.0429 2.7258 34 1 2.1789 1.9295 1.7739 35 1 0.1080 1.1249 4.1618 36 1 -1.0148 1.5861 6.3003 37 1 -0.6642 0.0966 8.2263 38 1 0.8021 -1.8682 8.0253 39 1 1.9286 -2.3559 5.8948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251713954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:05 Heat of formation + Delta-G solvation = -16.895165 kcal Electronic energy + Delta-G solvation = -19771.653383 eV Core-core repulsion = 16871.984604 eV Total energy + Delta-G solvation = -2899.668779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36726 -39.43428 -38.26574 -35.03659 -33.07054 -31.88119 -31.56272 -30.47269 -27.48982 -26.55087 -25.53522 -23.93262 -23.26241 -21.49966 -19.90484 -18.51916 -18.32567 -17.09932 -16.65146 -16.50296 -16.17771 -15.68617 -15.36130 -15.25355 -14.80669 -14.55368 -14.44601 -14.28209 -13.68312 -13.46442 -13.29834 -13.03409 -12.93078 -12.73822 -12.62978 -12.56574 -12.21571 -12.12740 -12.00734 -11.90140 -11.88733 -10.90176 -10.54524 -10.37407 -9.90896 -9.88984 -8.89789 -8.14670 -6.21829 -0.26727 0.46351 1.40006 1.41767 1.49340 1.52067 2.41564 2.86599 2.91178 3.16372 3.45546 3.88934 4.06679 4.09917 4.16207 4.18898 4.32794 4.50944 4.53735 4.60691 4.68444 4.70411 4.76885 4.85112 4.94963 4.99781 5.08626 5.11286 5.15651 5.24951 5.43001 5.46137 5.52128 5.53533 5.71258 5.74836 6.00270 6.19958 6.35025 6.56884 6.75570 6.92691 7.46134 8.93657 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039096 B = 0.004671 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.008546 B = 5993.091251 C = 6297.252342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H -0.015 1.015 4 C -0.522 4.522 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.536 5.536 13 C 0.048 3.952 14 C 0.030 3.970 15 H 0.114 0.886 16 C -0.168 4.168 17 C 0.405 3.595 18 O -0.474 6.474 19 C -0.182 4.182 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.081 4.081 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.012 0.988 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 1.710 19.818 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 H 0.002 0.998 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.260 5.260 13 C -0.100 4.100 14 C -0.080 4.080 15 H 0.132 0.868 16 C -0.226 4.226 17 C 0.284 3.716 18 O -0.351 6.351 19 C -0.184 4.184 20 C -0.097 4.097 21 C -0.150 4.150 22 C -0.103 4.103 23 C -0.152 4.152 24 C -0.100 4.100 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.177 0.823 38 H 0.169 0.831 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.666 0.848 19.600 19.958 hybrid contribution 0.688 0.324 -1.434 1.624 sum -2.978 1.172 18.165 18.445 Atomic orbital electron populations 1.21635 0.97268 0.98887 0.99836 1.19116 0.92432 0.91196 0.86359 0.99769 1.21372 1.35576 1.07616 0.91439 0.93229 1.25596 0.95414 0.95554 1.01547 1.70046 1.45445 1.15811 1.24366 0.85626 0.78456 0.78656 0.79395 1.20128 1.20703 1.19829 1.62090 1.10547 1.51821 1.01497 1.22149 0.88080 0.98683 1.01129 1.22176 1.02305 0.93180 0.90336 0.86835 1.22264 1.00463 0.96522 1.03371 1.22843 0.77078 0.83273 0.88454 1.90415 1.32150 1.27411 1.85073 1.20484 1.03382 0.99702 0.94807 1.21743 0.93780 0.94860 0.99366 1.21541 1.00085 1.01108 0.92236 1.21854 0.95614 0.93009 0.99800 1.21451 0.97563 0.98881 0.97323 1.21526 0.97752 0.98005 0.92695 0.93423 0.94736 0.94039 0.92857 0.96931 0.91368 0.93318 0.88961 0.92724 0.92386 0.84264 0.82520 0.82261 0.83079 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.70 71.98 0.63 -5.00 16 2 C 0.22 11.04 1.75 44.17 0.08 11.11 16 3 H -0.02 -0.85 6.77 -2.39 -0.02 -0.86 16 4 C -0.52 -29.60 7.80 25.60 0.20 -29.40 16 5 H 0.05 2.89 6.66 -2.91 -0.02 2.87 16 6 C 0.02 1.01 5.18 84.65 0.44 1.45 16 7 N -0.92 -52.91 12.09 21.45 0.26 -52.65 16 8 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.54 -24.38 4.35 -880.60 -3.83 -28.21 16 13 C 0.05 2.13 7.65 127.69 0.98 3.10 16 14 C 0.03 1.07 1.74 44.17 0.08 1.15 16 15 H 0.11 3.88 5.03 -2.39 -0.01 3.87 16 16 C -0.17 -5.29 8.16 71.98 0.59 -4.71 16 17 C 0.40 13.99 6.24 28.03 0.17 14.16 16 18 O -0.47 -19.33 14.19 -2.95 -0.04 -19.37 16 19 C -0.18 -4.92 5.86 -20.15 -0.12 -5.04 16 20 C -0.08 -1.67 8.63 22.58 0.19 -1.48 16 21 C -0.13 -2.02 10.03 22.23 0.22 -1.80 16 22 C -0.09 -1.15 10.04 22.35 0.22 -0.93 16 23 C -0.13 -2.26 10.03 22.23 0.22 -2.03 16 24 C -0.08 -1.96 9.60 22.58 0.22 -1.74 16 25 H 0.05 2.48 6.71 -2.39 -0.02 2.47 16 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.67 6.50 -2.38 -0.02 1.65 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.01 0.54 6.92 -2.39 -0.02 0.52 16 30 H 0.07 2.87 5.73 -2.39 -0.01 2.85 16 31 H 0.05 2.32 6.64 -2.39 -0.02 2.31 16 32 H 0.09 2.22 6.58 -2.39 -0.02 2.20 16 33 H 0.05 1.78 6.57 -2.39 -0.02 1.76 16 34 H 0.06 2.03 6.87 -2.39 -0.02 2.01 16 35 H 0.14 2.70 5.91 -2.91 -0.02 2.68 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 Total: -1.00 -67.55 308.04 3.58 -63.97 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.05 Total: 10.64 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 4.12 Total: -21.15 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -3.57 Total: -80.86 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.04 Total: -19.37 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.55 3.58 -63.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251713954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.075 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds