Wall clock time and date at job start Mon Mar 30 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 C 1.50705 * 109.47451 * 240.00296 * 2 1 3 5 5 H 1.08000 * 120.00254 * 240.00382 * 4 2 1 6 6 C 1.37881 * 119.99811 * 59.99374 * 4 2 1 7 7 N 1.31513 * 120.00097 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46868 * 60.00282 * 8 6 4 10 10 H 1.48498 * 109.47275 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47198 * 300.00619 * 8 6 4 12 12 N 1.46895 * 109.47585 * 120.00005 * 2 1 3 13 13 C 1.46901 * 110.99878 * 58.95054 * 12 2 1 14 14 C 1.46898 * 110.99910 * 295.00438 * 12 2 1 15 15 C 1.53004 * 109.47389 * 189.99345 * 14 12 2 16 16 H 1.08996 * 110.85604 * 302.72735 * 15 14 12 17 17 C 1.54710 * 110.93469 * 66.45049 * 15 14 12 18 18 O 1.43778 * 102.95089 * 92.97319 * 17 15 14 19 19 C 1.36139 * 109.23415 * 27.65309 * 18 17 15 20 20 C 1.39285 * 129.88714 * 161.02872 * 19 18 17 21 21 C 1.37932 * 120.23609 * 179.53114 * 20 19 18 22 22 C 1.38288 * 120.35703 * 0.02562 * 21 20 19 23 23 C 1.38354 * 119.76021 * 0.19892 * 22 21 20 24 24 C 1.37737 * 119.97779 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47278 * 300.00189 * 1 2 3 26 26 H 1.09005 * 109.47066 * 59.99550 * 1 2 3 27 27 H 1.08998 * 109.47288 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99887 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47501 * 296.05435 * 13 12 2 30 30 H 1.09002 * 109.46950 * 56.04884 * 13 12 2 31 31 H 1.09004 * 109.47398 * 176.04755 * 13 12 2 32 32 H 1.09000 * 109.47654 * 69.99353 * 14 12 2 33 33 H 1.08997 * 109.47349 * 309.99622 * 14 12 2 34 34 H 1.09002 * 110.75169 * 334.55797 * 17 15 14 35 35 H 1.08999 * 110.74693 * 211.39206 * 17 15 14 36 36 H 1.07992 * 119.88832 * 359.52797 * 20 19 18 37 37 H 1.08006 * 119.82328 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.12382 * 180.21837 * 22 21 20 39 39 H 1.07997 * 120.00867 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3788 -0.5663 3.6186 16 1 2.1509 -1.6276 3.7165 17 6 3.9049 -0.3361 3.5110 18 8 4.0988 0.8863 4.2428 19 6 3.1247 1.0033 5.1865 20 6 3.0830 1.7915 6.3342 21 6 1.9767 1.7617 7.1574 22 6 0.8998 0.9497 6.8519 23 6 0.9354 0.1603 5.7162 24 6 2.0406 0.1858 4.8947 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 0.4419 -2.0731 1.3347 30 1 1.8167 -2.5950 0.3318 31 1 1.9618 -2.5869 2.1058 32 1 0.5722 -0.0345 2.5725 33 1 1.9297 1.0870 2.3125 34 1 4.2048 -0.2148 2.4701 35 1 4.4527 -1.1557 3.9761 36 1 3.9198 2.4281 6.5805 37 1 1.9516 2.3753 8.0459 38 1 0.0341 0.9320 7.4973 39 1 0.0965 -0.4750 5.4736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252641249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:41 Heat of formation + Delta-G solvation = 2.845858 kcal Electronic energy + Delta-G solvation = -19740.217978 eV Core-core repulsion = 16841.405234 eV Total energy + Delta-G solvation = -2898.812744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05070 -37.51406 -37.05895 -33.51600 -32.11702 -30.07784 -29.47046 -28.24746 -26.46142 -25.15948 -24.02933 -22.76252 -21.93377 -20.53339 -19.09720 -17.02054 -16.60847 -16.23875 -15.94630 -15.43191 -15.02740 -14.28540 -14.05417 -13.77577 -13.56172 -13.27910 -12.94922 -12.58002 -12.36922 -12.09603 -11.76491 -11.60732 -11.39216 -11.09410 -10.87435 -10.80962 -10.75021 -10.58603 -10.50451 -10.26201 -10.03691 -9.83788 -8.94408 -8.80408 -8.39585 -8.03664 -7.21786 -6.01674 -4.05935 1.33160 1.42821 3.31833 3.36512 3.38937 3.47370 3.76712 4.38391 4.54377 4.74940 4.94802 5.04295 5.11394 5.28570 5.31849 5.32621 5.42215 5.61958 5.74777 5.77901 5.99109 6.07876 6.16026 6.20981 6.34301 6.38674 6.41361 6.48699 6.55801 6.64737 6.68522 6.81027 6.87847 7.11122 7.31742 7.46567 7.69585 7.80405 8.09271 8.35303 8.56147 8.99328 9.59091 11.05406 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036792 B = 0.004531 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.846361 B = 6178.206701 C = 6359.280188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.039 0.961 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.535 5.535 13 C 0.031 3.969 14 C 0.069 3.931 15 C -0.072 4.072 16 H 0.094 0.906 17 C 0.061 3.939 18 O -0.305 6.305 19 C 0.112 3.888 20 C -0.146 4.146 21 C -0.089 4.089 22 C -0.156 4.156 23 C -0.069 4.069 24 C -0.164 4.164 25 H 0.007 0.993 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -1.465 16.574 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.057 0.943 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.258 5.258 13 C -0.118 4.118 14 C -0.060 4.060 15 C -0.091 4.091 16 H 0.112 0.888 17 C -0.014 4.014 18 O -0.218 6.218 19 C 0.066 3.934 20 C -0.165 4.165 21 C -0.108 4.108 22 C -0.174 4.174 23 C -0.087 4.087 24 C -0.165 4.165 25 H 0.026 0.974 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.635 -1.220 16.312 16.439 hybrid contribution -0.831 -0.519 -0.891 1.325 sum 0.804 -1.739 15.421 15.539 Atomic orbital electron populations 1.22395 1.00855 0.99306 1.00529 1.19300 0.89774 0.94566 0.85799 0.94299 1.21068 1.30755 1.12529 0.89651 0.91943 1.24929 0.95202 0.95109 0.99005 1.69878 1.36929 1.22977 1.23526 0.86583 0.79235 0.79558 0.82136 1.20397 1.21410 1.20216 1.62331 1.59457 1.02019 1.02042 1.22284 0.96915 0.91282 1.01275 1.21921 0.96505 0.98211 0.89362 1.21520 0.95491 1.00304 0.91808 0.88831 1.23939 0.94925 0.84148 0.98358 1.86847 1.48561 1.41532 1.44893 1.19681 0.88220 0.95794 0.89689 1.20233 1.00376 1.02882 0.93007 1.20808 0.92756 0.98377 0.98815 1.20978 0.99249 0.98871 0.98317 1.20336 0.96517 0.98354 0.93473 1.20955 0.95603 1.02209 0.97735 0.97440 0.89361 0.95127 0.92936 0.96486 0.90563 0.94009 0.94980 0.91209 0.85592 0.91311 0.85731 0.85538 0.85821 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.27 37.15 0.31 -3.83 16 2 C 0.21 5.25 2.34 -68.87 -0.16 5.09 16 3 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 4 C -0.50 -13.45 7.89 -34.44 -0.27 -13.72 16 5 H 0.06 1.66 6.77 -52.49 -0.36 1.30 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.54 -11.03 4.23 -236.28 -1.00 -12.03 16 13 C 0.03 0.58 8.57 60.07 0.51 1.09 16 14 C 0.07 1.25 3.86 -3.82 -0.01 1.24 16 15 C -0.07 -1.10 3.01 -90.26 -0.27 -1.37 16 16 H 0.09 1.33 6.53 -51.93 -0.34 0.99 16 17 C 0.06 0.91 7.47 38.06 0.28 1.20 16 18 O -0.30 -5.00 11.11 -20.18 -0.22 -5.22 16 19 C 0.11 1.70 7.04 -38.96 -0.27 1.43 16 20 C -0.15 -1.87 10.06 -39.30 -0.40 -2.26 16 21 C -0.09 -0.97 10.02 -39.68 -0.40 -1.37 16 22 C -0.16 -1.73 10.07 -39.52 -0.40 -2.13 16 23 C -0.07 -0.88 10.03 -39.72 -0.40 -1.27 16 24 C -0.16 -2.40 5.63 -103.96 -0.59 -2.99 16 25 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.03 0.71 6.48 -51.93 -0.34 0.37 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.02 0.32 6.51 -51.93 -0.34 -0.02 16 30 H 0.08 1.54 6.41 -51.93 -0.33 1.21 16 31 H 0.04 0.66 6.44 -51.93 -0.33 0.32 16 32 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 33 H 0.07 1.38 8.00 -51.93 -0.42 0.97 16 34 H 0.13 2.05 7.54 -51.93 -0.39 1.66 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -28.62 308.23 -8.66 -37.28 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.54 Total: 1.33 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.16 Total: -17.40 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.37 Total: -36.75 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.22 Total: -5.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.62 -8.66 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252641249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.125 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds