Wall clock time and date at job start Mon Mar 30 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 C 1.50705 * 109.47451 * 240.00296 * 2 1 3 5 5 H 1.08000 * 120.00254 * 240.00382 * 4 2 1 6 6 C 1.37881 * 119.99811 * 59.99374 * 4 2 1 7 7 N 1.31513 * 120.00097 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46868 * 60.00282 * 8 6 4 10 10 H 1.48498 * 109.47275 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47198 * 300.00619 * 8 6 4 12 12 N 1.46895 * 109.47585 * 120.00005 * 2 1 3 13 13 C 1.46901 * 110.99878 * 58.95054 * 12 2 1 14 14 C 1.46898 * 110.99910 * 295.00438 * 12 2 1 15 15 C 1.53004 * 109.47389 * 189.99345 * 14 12 2 16 16 H 1.08996 * 110.85604 * 302.72735 * 15 14 12 17 17 C 1.54710 * 110.93469 * 66.45049 * 15 14 12 18 18 O 1.43778 * 102.95089 * 92.97319 * 17 15 14 19 19 C 1.36139 * 109.23415 * 27.65309 * 18 17 15 20 20 C 1.39285 * 129.88714 * 161.02872 * 19 18 17 21 21 C 1.37932 * 120.23609 * 179.53114 * 20 19 18 22 22 C 1.38288 * 120.35703 * 0.02562 * 21 20 19 23 23 C 1.38354 * 119.76021 * 0.19892 * 22 21 20 24 24 C 1.37737 * 119.97779 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47278 * 300.00189 * 1 2 3 26 26 H 1.09005 * 109.47066 * 59.99550 * 1 2 3 27 27 H 1.08998 * 109.47288 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99887 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47501 * 296.05435 * 13 12 2 30 30 H 1.09002 * 109.46950 * 56.04884 * 13 12 2 31 31 H 1.09004 * 109.47398 * 176.04755 * 13 12 2 32 32 H 1.09000 * 109.47654 * 69.99353 * 14 12 2 33 33 H 1.08997 * 109.47349 * 309.99622 * 14 12 2 34 34 H 1.09002 * 110.75169 * 334.55797 * 17 15 14 35 35 H 1.08999 * 110.74693 * 211.39206 * 17 15 14 36 36 H 1.07992 * 119.88832 * 359.52797 * 20 19 18 37 37 H 1.08006 * 119.82328 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.12382 * 180.21837 * 22 21 20 39 39 H 1.07997 * 120.00867 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3788 -0.5663 3.6186 16 1 2.1509 -1.6276 3.7165 17 6 3.9049 -0.3361 3.5110 18 8 4.0988 0.8863 4.2428 19 6 3.1247 1.0033 5.1865 20 6 3.0830 1.7915 6.3342 21 6 1.9767 1.7617 7.1574 22 6 0.8998 0.9497 6.8519 23 6 0.9354 0.1603 5.7162 24 6 2.0406 0.1858 4.8947 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 0.4419 -2.0731 1.3347 30 1 1.8167 -2.5950 0.3318 31 1 1.9618 -2.5869 2.1058 32 1 0.5722 -0.0345 2.5725 33 1 1.9297 1.0870 2.3125 34 1 4.2048 -0.2148 2.4701 35 1 4.4527 -1.1557 3.9761 36 1 3.9198 2.4281 6.5805 37 1 1.9516 2.3753 8.0459 38 1 0.0341 0.9320 7.4973 39 1 0.0965 -0.4750 5.4736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252641249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:40 Heat of formation + Delta-G solvation = -13.804035 kcal Electronic energy + Delta-G solvation = -19740.939971 eV Core-core repulsion = 16841.405234 eV Total energy + Delta-G solvation = -2899.534737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.15516 -39.03233 -38.22273 -35.21010 -33.68905 -31.19229 -30.73717 -29.79257 -27.99865 -27.14445 -25.54504 -23.87751 -22.97699 -21.91142 -20.78149 -18.29864 -18.00505 -17.70893 -17.26721 -16.81749 -16.42364 -15.96368 -15.43194 -15.22817 -14.91378 -14.51511 -14.31122 -13.91190 -13.76331 -13.46209 -13.24784 -13.10239 -12.83747 -12.69419 -12.57418 -12.54634 -12.39214 -12.02602 -11.97995 -11.72462 -11.59214 -11.54296 -10.92101 -10.49315 -9.82068 -9.09357 -8.89233 -8.10385 -6.21697 0.36695 0.45771 1.43880 1.45603 1.52921 2.41358 2.43171 2.78432 3.18934 3.23176 3.63654 3.69481 3.97973 4.00107 4.24615 4.25416 4.48161 4.51939 4.56561 4.61616 4.62409 4.69994 4.80728 4.82242 4.87025 4.88432 5.01524 5.11638 5.17230 5.22942 5.43208 5.53212 5.53842 5.58235 5.69619 5.74370 5.77466 6.17277 6.28334 6.45501 6.69285 6.91665 7.47627 8.95907 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036792 B = 0.004531 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.846361 B = 6178.206701 C = 6359.280188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.539 5.539 13 C 0.035 3.965 14 C 0.078 3.922 15 C -0.063 4.063 16 H 0.109 0.891 17 C 0.061 3.939 18 O -0.328 6.328 19 C 0.080 3.920 20 C -0.155 4.155 21 C -0.083 4.083 22 C -0.150 4.150 23 C -0.078 4.078 24 C -0.182 4.182 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -2.486 18.528 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.262 5.262 13 C -0.113 4.113 14 C -0.050 4.050 15 C -0.082 4.082 16 H 0.127 0.873 17 C -0.013 4.013 18 O -0.242 6.242 19 C 0.034 3.966 20 C -0.173 4.173 21 C -0.101 4.101 22 C -0.168 4.168 23 C -0.096 4.096 24 C -0.183 4.183 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.155 0.845 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.283 -2.253 18.288 18.471 hybrid contribution -0.747 -0.136 -1.371 1.567 sum 0.537 -2.389 16.918 17.094 Atomic orbital electron populations 1.22186 1.00376 0.99274 0.99764 1.19040 0.89998 0.92739 0.87377 0.98326 1.21357 1.30670 1.12549 0.90655 0.91973 1.25722 0.95385 0.95779 1.01962 1.70022 1.37964 1.24271 1.24039 0.85573 0.78684 0.78701 0.78423 1.19417 1.21271 1.19819 1.62208 1.59609 1.02898 1.01516 1.22289 0.97045 0.89920 1.02053 1.21817 0.96726 0.96845 0.89614 1.21375 0.95127 1.00903 0.90770 0.87310 1.23911 0.95167 0.84668 0.97570 1.86792 1.49452 1.42230 1.45746 1.20049 0.88402 0.97452 0.90648 1.20599 1.01663 1.02547 0.92528 1.21265 0.91632 0.97956 0.99224 1.21416 1.00182 0.97462 0.97731 1.20646 0.96231 0.98932 0.93794 1.20985 0.96555 1.02877 0.97896 0.96093 0.92127 0.94590 0.93042 0.96528 0.92161 0.90468 0.95172 0.93840 0.87631 0.88929 0.84530 0.82023 0.82638 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.27 71.98 0.60 -7.10 16 2 C 0.22 11.02 2.34 44.17 0.10 11.13 16 3 H 0.00 -0.07 8.03 -2.38 -0.02 -0.09 16 4 C -0.51 -28.03 7.89 25.60 0.20 -27.83 16 5 H 0.06 3.33 6.77 -2.91 -0.02 3.31 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.33 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 N -0.54 -22.48 4.23 -901.46 -3.81 -26.29 16 13 C 0.03 1.27 8.57 127.69 1.09 2.37 16 14 C 0.08 2.90 3.86 86.30 0.33 3.23 16 15 C -0.06 -1.88 3.01 -10.56 -0.03 -1.91 16 16 H 0.11 2.85 6.53 -2.39 -0.02 2.84 16 17 C 0.06 1.84 7.47 72.57 0.54 2.39 16 18 O -0.33 -10.93 11.11 -95.13 -1.06 -11.99 16 19 C 0.08 2.37 7.04 22.67 0.16 2.53 16 20 C -0.15 -3.69 10.06 22.45 0.23 -3.47 16 21 C -0.08 -1.53 10.02 22.21 0.22 -1.31 16 22 C -0.15 -2.79 10.07 22.31 0.22 -2.57 16 23 C -0.08 -1.81 10.03 22.18 0.22 -1.58 16 24 C -0.18 -5.14 5.63 -19.43 -0.11 -5.25 16 25 H 0.02 0.92 6.75 -2.39 -0.02 0.90 16 26 H 0.06 3.32 6.07 -2.38 -0.01 3.31 16 27 H 0.04 1.68 6.48 -2.39 -0.02 1.66 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.02 0.60 6.51 -2.39 -0.02 0.58 16 30 H 0.06 2.39 6.41 -2.39 -0.02 2.37 16 31 H 0.08 2.25 6.44 -2.39 -0.02 2.24 16 32 H 0.03 1.11 6.94 -2.39 -0.02 1.10 16 33 H 0.04 1.81 8.00 -2.39 -0.02 1.79 16 34 H 0.11 3.56 7.54 -2.39 -0.02 3.54 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -63.11 308.23 2.67 -60.44 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.04 Total: 13.95 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.23 Total: -28.38 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.57 Total: -79.63 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.06 Total: -11.99 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.11 2.67 -60.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252641249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.633 kcal (2) G-P(sol) polarization free energy of solvation -63.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds