Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46514 * 2 1 4 4 C 1.50705 * 109.46840 * 119.99204 * 2 1 3 5 5 H 1.08004 * 119.99474 * 120.00322 * 4 2 1 6 6 C 1.37868 * 120.00218 * 300.00568 * 4 2 1 7 7 N 1.31520 * 120.00271 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47093 * 59.99478 * 8 6 4 10 10 H 1.48496 * 109.47404 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46797 * 300.00239 * 8 6 4 12 12 N 1.46897 * 109.47350 * 239.99877 * 2 1 3 13 13 C 1.46907 * 110.99610 * 306.04433 * 12 2 1 14 14 C 1.46893 * 111.00339 * 70.00013 * 12 2 1 15 15 C 1.53005 * 109.47374 * 75.96993 * 14 12 2 16 16 H 1.08999 * 110.83279 * 300.26703 * 15 14 12 17 17 C 1.54709 * 110.94108 * 63.98549 * 15 14 12 18 18 O 1.43758 * 102.79174 * 92.79492 * 17 15 14 19 19 C 1.36124 * 109.29050 * 27.55108 * 18 17 15 20 20 C 1.39294 * 129.87836 * 161.44134 * 19 18 17 21 21 C 1.37929 * 120.24026 * 179.60900 * 20 19 18 22 22 C 1.38284 * 120.35769 * 0.02562 * 21 20 19 23 23 C 1.38361 * 119.75960 * 0.15895 * 22 21 20 24 24 C 1.37732 * 119.98028 * 0.02562 * 23 22 21 25 25 H 1.09006 * 109.46951 * 60.00619 * 1 2 3 26 26 H 1.08995 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47608 * 300.00456 * 1 2 3 28 28 H 0.97000 * 120.00068 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46924 * 190.49579 * 13 12 2 30 30 H 1.09002 * 109.47071 * 310.49392 * 13 12 2 31 31 H 1.08992 * 109.46856 * 70.49914 * 13 12 2 32 32 H 1.08997 * 109.47000 * 195.97339 * 14 12 2 33 33 H 1.09001 * 109.47099 * 315.96805 * 14 12 2 34 34 H 1.08999 * 110.74582 * 211.12220 * 17 15 14 35 35 H 1.09004 * 110.74940 * 334.47123 * 17 15 14 36 36 H 1.08005 * 119.87627 * 359.57952 * 20 19 18 37 37 H 1.08007 * 119.82015 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.12438 * 180.13470 * 22 21 20 39 39 H 1.08003 * 120.00559 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8304 2.6033 8 14 2.3211 -1.1200 4.0081 9 1 3.8062 -1.1206 4.0084 10 1 1.8266 -0.4195 5.2205 11 1 1.8256 -2.5199 4.0079 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3076 14 6 1.7531 0.0971 -2.4090 15 6 2.7511 1.2538 -2.4934 16 1 2.6679 1.9019 -1.6210 17 6 4.1965 0.7263 -2.6547 18 8 4.3708 0.7067 -4.0815 19 6 3.5707 1.6527 -4.6453 20 6 3.6351 2.2406 -5.9065 21 6 2.7038 3.1868 -6.2802 22 6 1.6986 3.5609 -5.4073 23 6 1.6299 2.9845 -4.1514 24 6 2.5611 2.0422 -3.7747 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7093 1.1621 3.4843 29 1 1.9477 -2.5935 -2.0908 30 1 1.5450 -2.5578 -0.3573 31 1 0.3762 -1.9517 -1.5552 32 1 1.8582 -0.5385 -3.2882 33 1 0.7389 0.4945 -2.3672 34 1 4.9097 1.4056 -2.1878 35 1 4.2897 -0.2777 -2.2405 36 1 4.4175 1.9548 -6.5940 37 1 2.7604 3.6386 -7.2596 38 1 0.9700 4.3006 -5.7046 39 1 0.8463 3.2734 -3.4666 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252641250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = 2.071652 kcal Electronic energy + Delta-G solvation = -19873.292409 eV Core-core repulsion = 16974.446093 eV Total energy + Delta-G solvation = -2898.846316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98197 -37.47624 -37.02109 -33.32302 -32.21511 -30.00264 -29.34457 -28.53935 -26.22326 -25.21681 -23.73401 -22.73014 -21.88303 -20.83365 -18.85483 -16.90300 -16.59938 -16.18843 -15.89037 -15.33497 -15.08503 -14.27696 -13.99662 -13.82837 -13.37467 -13.22334 -12.89131 -12.46351 -12.39073 -12.12056 -11.64086 -11.55541 -11.28301 -11.17746 -10.94168 -10.80166 -10.67466 -10.58288 -10.47559 -10.25768 -10.07881 -9.72077 -8.96517 -8.76029 -8.39859 -7.97153 -7.21730 -6.03415 -4.07225 1.40094 1.49147 3.30924 3.35576 3.38329 3.53821 3.84130 4.38521 4.63274 4.85148 5.01590 5.11027 5.18710 5.28801 5.41389 5.43365 5.48710 5.69972 5.84003 5.90610 6.08586 6.12798 6.20933 6.28053 6.37920 6.40484 6.42526 6.54708 6.63944 6.64897 6.76342 6.80578 6.84721 7.10628 7.37679 7.42451 7.68083 7.81248 8.09239 8.34165 8.55184 8.98610 9.58034 11.03602 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.004934 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.919966 B = 5673.049895 C = 5861.414133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.039 0.961 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.036 3.964 14 C 0.067 3.933 15 C -0.069 4.069 16 H 0.100 0.900 17 C 0.063 3.937 18 O -0.309 6.309 19 C 0.111 3.889 20 C -0.148 4.148 21 C -0.091 4.091 22 C -0.156 4.156 23 C -0.068 4.068 24 C -0.161 4.161 25 H 0.007 0.993 26 H 0.030 0.970 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.014 0.986 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 3.275 -13.682 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.112 4.112 14 C -0.062 4.062 15 C -0.088 4.088 16 H 0.118 0.882 17 C -0.011 4.011 18 O -0.223 6.223 19 C 0.065 3.935 20 C -0.167 4.167 21 C -0.109 4.109 22 C -0.174 4.174 23 C -0.086 4.086 24 C -0.162 4.162 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.669 3.160 -13.564 14.180 hybrid contribution -0.796 -0.218 1.004 1.300 sum 1.873 2.942 -12.560 13.035 Atomic orbital electron populations 1.22399 1.00914 0.99421 1.00405 1.19333 0.89732 0.94546 0.86093 0.94319 1.21066 1.30630 1.12518 0.89631 0.91985 1.24920 0.95207 0.95121 0.98981 1.69873 1.36999 1.23025 1.23518 0.86595 0.79227 0.79622 0.82152 1.20237 1.21432 1.20382 1.62277 1.58933 1.02485 1.02340 1.22202 0.95854 0.91375 1.01774 1.21896 0.96056 0.94011 0.94213 1.21372 0.95629 0.96434 0.95363 0.88160 1.23921 0.95368 1.04644 0.77156 1.86798 1.61995 1.51327 1.22184 1.19686 0.90376 0.89291 0.94169 1.20206 1.02160 0.99471 0.94840 1.20790 0.94241 0.96535 0.99354 1.20982 1.00042 1.02298 0.94095 1.20388 0.97390 0.94660 0.96160 1.20935 0.97410 1.00305 0.97572 0.97452 0.95077 0.89351 0.92957 0.93866 0.90459 0.96742 0.92247 0.94379 0.91053 0.85794 0.85868 0.85632 0.85849 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.26 37.16 0.31 -3.77 16 2 C 0.21 5.03 2.22 -68.86 -0.15 4.88 16 3 H 0.04 1.02 6.69 -51.93 -0.35 0.67 16 4 C -0.50 -13.22 7.82 -34.44 -0.27 -13.49 16 5 H 0.06 1.64 7.19 -52.48 -0.38 1.27 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.54 -11.04 3.99 -236.28 -0.94 -11.98 16 13 C 0.04 0.70 8.46 60.07 0.51 1.21 16 14 C 0.07 1.22 4.37 -3.83 -0.02 1.20 16 15 C -0.07 -1.18 3.14 -90.41 -0.28 -1.46 16 16 H 0.10 1.85 6.88 -51.93 -0.36 1.49 16 17 C 0.06 1.03 7.47 38.06 0.28 1.31 16 18 O -0.31 -5.13 11.10 -20.14 -0.22 -5.35 16 19 C 0.11 1.73 7.04 -38.95 -0.27 1.45 16 20 C -0.15 -1.93 10.06 -39.30 -0.40 -2.33 16 21 C -0.09 -1.03 10.01 -39.68 -0.40 -1.43 16 22 C -0.16 -1.84 10.07 -39.52 -0.40 -2.24 16 23 C -0.07 -0.94 10.03 -39.72 -0.40 -1.34 16 24 C -0.16 -2.53 5.63 -104.10 -0.59 -3.12 16 25 H 0.01 0.14 6.45 -51.93 -0.33 -0.19 16 26 H 0.03 0.71 6.56 -51.93 -0.34 0.37 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.59 6.64 -51.93 -0.34 1.24 16 31 H 0.01 0.27 6.85 -51.93 -0.36 -0.09 16 32 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 33 H 0.04 0.72 6.17 -51.93 -0.32 0.40 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 2.08 7.44 -51.93 -0.39 1.69 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -27.91 308.87 -8.64 -36.55 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.56 Total: 2.13 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.17 Total: -17.65 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.32 Total: -36.28 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.22 Total: -5.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.91 -8.64 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252641250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.619 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds