Wall clock time and date at job start Mon Mar 30 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.87394 * 2 1 4 4 O 1.43749 * 109.87710 * 238.98951 * 2 1 3 5 5 C 1.44386 * 106.97466 * 213.91318 * 4 2 1 6 6 C 1.54997 * 103.48795 * 40.05865 * 5 4 2 7 7 C 1.54102 * 110.00252 * 121.08591 * 2 1 3 8 8 H 1.09004 * 110.48578 * 240.19615 * 7 2 1 9 9 N 1.46899 * 110.48761 * 2.84515 * 7 2 1 10 10 C 1.46903 * 110.99928 * 205.00083 * 9 7 2 11 11 H 1.09001 * 109.47000 * 35.00477 * 10 9 7 12 12 C 1.50690 * 109.47227 * 275.00053 * 10 9 7 13 13 H 1.08002 * 120.00096 * 324.99457 * 12 10 9 14 14 C 1.37876 * 120.00248 * 144.99589 * 12 10 9 15 15 N 1.31520 * 120.00270 * 184.95382 * 14 12 10 16 16 Si 1.86804 * 119.99889 * 4.95480 * 14 12 10 17 17 H 1.48503 * 109.47137 * 84.72084 * 16 14 12 18 18 H 1.48494 * 109.47267 * 204.72179 * 16 14 12 19 19 H 1.48496 * 109.46823 * 324.72589 * 16 14 12 20 20 C 1.50700 * 109.47064 * 154.99811 * 10 9 7 21 21 C 1.38234 * 119.99635 * 44.89820 * 20 10 9 22 22 C 1.38241 * 119.99814 * 179.74197 * 21 20 10 23 23 C 1.38237 * 119.99845 * 0.53295 * 22 21 20 24 24 C 1.38233 * 119.99843 * 359.73847 * 23 22 21 25 25 C 1.38226 * 120.00426 * 225.16971 * 20 10 9 26 26 H 1.09001 * 109.47374 * 179.55485 * 1 2 3 27 27 H 1.09003 * 109.47121 * 299.55896 * 1 2 3 28 28 H 1.08999 * 109.47097 * 59.55772 * 1 2 3 29 29 H 1.08993 * 110.61732 * 158.56046 * 5 4 2 30 30 H 1.08997 * 110.61881 * 281.56254 * 5 4 2 31 31 H 1.09002 * 110.90847 * 204.77611 * 6 5 4 32 32 H 1.09003 * 110.93093 * 81.18984 * 6 5 4 33 33 H 1.00896 * 111.00097 * 81.04931 * 9 7 2 34 34 H 0.97003 * 119.99689 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.00414 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99910 * 180.29311 * 22 21 20 37 37 H 1.07998 * 120.00018 * 179.76930 * 23 22 21 38 38 H 1.08001 * 119.99985 * 180.02562 * 24 23 22 39 39 H 1.08011 * 119.99974 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0187 -0.6965 -1.1586 5 6 3.2398 -1.3603 -0.7675 6 6 2.9243 -1.8888 0.6550 7 6 2.0571 -0.7477 1.2401 8 1 2.6645 -0.0843 1.8559 9 7 0.9415 -1.2984 2.0212 10 6 1.3212 -1.4747 3.4293 11 1 1.9968 -0.6726 3.7266 12 6 2.0121 -2.8029 3.6007 13 1 1.7007 -3.6534 3.0124 14 6 3.0416 -2.9324 4.5086 15 7 3.7088 -4.0629 4.5894 16 14 3.4888 -1.5021 5.6240 17 1 2.6121 -1.5162 6.8225 18 1 4.9068 -1.6283 6.0464 19 1 3.3027 -0.2249 4.8896 20 6 0.0857 -1.4361 4.2914 21 6 -1.0427 -2.1396 3.9138 22 6 -2.1743 -2.1085 4.7073 23 6 -2.1810 -1.3650 5.8727 24 6 -1.0544 -0.6570 6.2473 25 6 0.0790 -0.6927 5.4567 26 1 -0.3634 -1.0276 -0.0080 27 1 -0.3633 0.5070 0.8939 28 1 -0.3633 0.5207 -0.8860 29 1 3.4611 -2.1862 -1.4434 30 1 4.0689 -0.6533 -0.7391 31 1 3.8389 -2.0181 1.2337 32 1 2.3608 -2.8207 0.6081 33 1 0.6152 -2.1662 1.6233 34 1 4.4329 -4.1540 5.2285 35 1 -1.0391 -2.7165 3.0009 36 1 -3.0543 -2.6619 4.4147 37 1 -3.0662 -1.3377 6.4907 38 1 -1.0595 -0.0765 7.1580 39 1 0.9591 -0.1392 5.7493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252742552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:44 Heat of formation + Delta-G solvation = -17.652842 kcal Electronic energy + Delta-G solvation = -20223.569516 eV Core-core repulsion = 17323.867882 eV Total energy + Delta-G solvation = -2899.701634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.38060 -38.46496 -35.39420 -32.63904 -31.38182 -30.90576 -30.21670 -28.83264 -26.43778 -24.80513 -22.71307 -21.89630 -21.62813 -20.02494 -19.59618 -17.16190 -16.58610 -15.83085 -15.36361 -15.07091 -14.84646 -14.37869 -14.18659 -13.31587 -13.13095 -12.90816 -12.78501 -12.56850 -12.14741 -12.12238 -11.91888 -11.78915 -11.65308 -10.97895 -10.86319 -10.79845 -10.56557 -10.47520 -10.35584 -10.08992 -9.81830 -9.50645 -9.30331 -8.77058 -8.21902 -7.94156 -7.41996 -6.28618 -4.29828 2.10110 2.18097 3.14263 3.20342 3.24517 4.22318 4.29826 4.52467 4.89450 5.06378 5.22695 5.34331 5.50020 5.52910 5.55259 5.59341 5.69750 5.77129 5.89563 5.98066 6.03146 6.09017 6.23399 6.26275 6.36005 6.41221 6.49797 6.52324 6.71043 6.74272 6.77665 6.83363 7.13853 7.21705 7.32652 7.33649 7.49418 7.75068 7.85073 8.19658 8.35506 8.74049 9.33165 10.83326 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.008991 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.966776 B = 3113.521799 C = 4307.064590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.075 3.925 3 H 0.058 0.942 4 O -0.383 6.383 5 C 0.044 3.956 6 C -0.164 4.164 7 C 0.072 3.928 8 H 0.079 0.921 9 N -0.666 5.666 10 C 0.199 3.801 11 H 0.054 0.946 12 C -0.530 4.530 13 H 0.078 0.922 14 C 0.082 3.918 15 N -0.888 5.888 16 Si 0.865 3.135 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.262 1.262 20 C -0.019 4.019 21 C -0.101 4.101 22 C -0.124 4.124 23 C -0.151 4.151 24 C -0.122 4.122 25 C -0.139 4.139 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.338 0.662 34 H 0.266 0.734 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 6.846 -3.811 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.017 3.983 3 H 0.076 0.924 4 O -0.303 6.303 5 C -0.033 4.033 6 C -0.203 4.203 7 C -0.039 4.039 8 H 0.097 0.903 9 N -0.295 5.295 10 C 0.091 3.909 11 H 0.072 0.928 12 C -0.568 4.568 13 H 0.096 0.904 14 C -0.123 4.123 15 N -0.524 5.524 16 Si 0.692 3.308 17 H -0.192 1.192 18 H -0.215 1.215 19 H -0.188 1.188 20 C -0.020 4.020 21 C -0.119 4.119 22 C -0.142 4.142 23 C -0.169 4.169 24 C -0.140 4.140 25 C -0.158 4.158 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.332 7.356 -3.807 9.851 hybrid contribution 1.192 -0.287 1.097 1.645 sum -4.140 7.069 -2.711 8.629 Atomic orbital electron populations 1.21547 0.93063 1.02633 1.00743 1.22828 0.96003 0.94589 0.84893 0.92376 1.88837 1.39618 1.68057 1.33779 1.23506 0.87409 0.95911 0.96511 1.23691 1.02117 0.99543 0.94996 1.22732 0.91493 0.95581 0.94142 0.90254 1.60931 1.32395 1.33178 1.02974 1.18864 0.89829 0.97500 0.84735 0.92780 1.21488 1.15956 0.95782 1.23615 0.90430 1.24989 0.95495 0.95497 0.96293 1.69896 1.21514 1.25234 1.35777 0.87122 0.77862 0.83464 0.82313 1.19214 1.21527 1.18778 1.20439 0.95230 0.91747 0.94590 1.20791 0.92547 0.99220 0.99364 1.21030 0.98190 0.99623 0.95405 1.20828 0.98005 1.00206 0.97868 1.20915 0.93766 1.00145 0.99160 1.20935 0.97665 1.00958 0.96197 0.92047 0.90600 0.94191 0.89716 0.92940 0.89929 0.90191 0.84349 0.92407 0.86749 0.87247 0.87418 0.87380 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.58 37.15 0.32 -1.50 16 2 C 0.08 1.19 4.05 -26.16 -0.11 1.08 16 3 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 4 O -0.38 -6.38 11.19 -35.23 -0.39 -6.77 16 5 C 0.04 0.66 7.72 38.21 0.29 0.95 16 6 C -0.16 -2.85 6.06 -24.73 -0.15 -3.00 16 7 C 0.07 1.26 3.32 -66.19 -0.22 1.04 16 8 H 0.08 1.45 7.45 -51.93 -0.39 1.06 16 9 N -0.67 -12.39 3.86 -100.58 -0.39 -12.77 16 10 C 0.20 4.29 1.84 -70.02 -0.13 4.16 16 11 H 0.05 1.23 4.24 -51.93 -0.22 1.01 16 12 C -0.53 -13.33 8.04 -34.45 -0.28 -13.61 16 13 H 0.08 2.14 8.00 -52.49 -0.42 1.72 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -25.44 13.96 55.43 0.77 -24.66 16 16 Si 0.86 20.30 25.07 -169.99 -4.26 16.04 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.26 -5.82 6.06 56.52 0.34 -5.48 16 20 C -0.02 -0.39 4.86 -104.63 -0.51 -0.90 16 21 C -0.10 -1.93 9.28 -39.58 -0.37 -2.29 16 22 C -0.12 -2.12 10.05 -39.58 -0.40 -2.51 16 23 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 24 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 25 C -0.14 -2.79 8.83 -39.59 -0.35 -3.14 16 26 H 0.06 0.94 7.48 -51.93 -0.39 0.55 16 27 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.08 1.49 7.57 -51.93 -0.39 1.09 16 33 H 0.34 6.36 6.86 -39.29 -0.27 6.09 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.11 2.10 7.42 -52.49 -0.39 1.71 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.10 2.09 6.30 -52.48 -0.33 1.76 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -27.45 308.97 -8.18 -35.64 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.79 Total: 10.94 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.78 Total: -23.06 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.39 Total: -37.44 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.39 Total: -6.77 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.26 Total: 16.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.45 -8.18 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252742552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.983 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds