Wall clock time and date at job start Mon Mar 30 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.87394 * 2 1 4 4 O 1.43749 * 109.87710 * 238.98951 * 2 1 3 5 5 C 1.44386 * 106.97466 * 213.91318 * 4 2 1 6 6 C 1.54997 * 103.48795 * 40.05865 * 5 4 2 7 7 C 1.54102 * 110.00252 * 121.08591 * 2 1 3 8 8 H 1.09004 * 110.48578 * 240.19615 * 7 2 1 9 9 N 1.46899 * 110.48761 * 2.84515 * 7 2 1 10 10 C 1.46903 * 110.99928 * 205.00083 * 9 7 2 11 11 H 1.09001 * 109.47000 * 35.00477 * 10 9 7 12 12 C 1.50690 * 109.47227 * 275.00053 * 10 9 7 13 13 H 1.08002 * 120.00096 * 324.99457 * 12 10 9 14 14 C 1.37876 * 120.00248 * 144.99589 * 12 10 9 15 15 N 1.31520 * 120.00270 * 184.95382 * 14 12 10 16 16 Si 1.86804 * 119.99889 * 4.95480 * 14 12 10 17 17 H 1.48503 * 109.47137 * 84.72084 * 16 14 12 18 18 H 1.48494 * 109.47267 * 204.72179 * 16 14 12 19 19 H 1.48496 * 109.46823 * 324.72589 * 16 14 12 20 20 C 1.50700 * 109.47064 * 154.99811 * 10 9 7 21 21 C 1.38234 * 119.99635 * 44.89820 * 20 10 9 22 22 C 1.38241 * 119.99814 * 179.74197 * 21 20 10 23 23 C 1.38237 * 119.99845 * 0.53295 * 22 21 20 24 24 C 1.38233 * 119.99843 * 359.73847 * 23 22 21 25 25 C 1.38226 * 120.00426 * 225.16971 * 20 10 9 26 26 H 1.09001 * 109.47374 * 179.55485 * 1 2 3 27 27 H 1.09003 * 109.47121 * 299.55896 * 1 2 3 28 28 H 1.08999 * 109.47097 * 59.55772 * 1 2 3 29 29 H 1.08993 * 110.61732 * 158.56046 * 5 4 2 30 30 H 1.08997 * 110.61881 * 281.56254 * 5 4 2 31 31 H 1.09002 * 110.90847 * 204.77611 * 6 5 4 32 32 H 1.09003 * 110.93093 * 81.18984 * 6 5 4 33 33 H 1.00896 * 111.00097 * 81.04931 * 9 7 2 34 34 H 0.97003 * 119.99689 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.00414 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99910 * 180.29311 * 22 21 20 37 37 H 1.07998 * 120.00018 * 179.76930 * 23 22 21 38 38 H 1.08001 * 119.99985 * 180.02562 * 24 23 22 39 39 H 1.08011 * 119.99974 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0187 -0.6965 -1.1586 5 6 3.2398 -1.3603 -0.7675 6 6 2.9243 -1.8888 0.6550 7 6 2.0571 -0.7477 1.2401 8 1 2.6645 -0.0843 1.8559 9 7 0.9415 -1.2984 2.0212 10 6 1.3212 -1.4747 3.4293 11 1 1.9968 -0.6726 3.7266 12 6 2.0121 -2.8029 3.6007 13 1 1.7007 -3.6534 3.0124 14 6 3.0416 -2.9324 4.5086 15 7 3.7088 -4.0629 4.5894 16 14 3.4888 -1.5021 5.6240 17 1 2.6121 -1.5162 6.8225 18 1 4.9068 -1.6283 6.0464 19 1 3.3027 -0.2249 4.8896 20 6 0.0857 -1.4361 4.2914 21 6 -1.0427 -2.1396 3.9138 22 6 -2.1743 -2.1085 4.7073 23 6 -2.1810 -1.3650 5.8727 24 6 -1.0544 -0.6570 6.2473 25 6 0.0790 -0.6927 5.4567 26 1 -0.3634 -1.0276 -0.0080 27 1 -0.3633 0.5070 0.8939 28 1 -0.3633 0.5207 -0.8860 29 1 3.4611 -2.1862 -1.4434 30 1 4.0689 -0.6533 -0.7391 31 1 3.8389 -2.0181 1.2337 32 1 2.3608 -2.8207 0.6081 33 1 0.6152 -2.1662 1.6233 34 1 4.4329 -4.1540 5.2285 35 1 -1.0391 -2.7165 3.0009 36 1 -3.0543 -2.6619 4.4147 37 1 -3.0662 -1.3377 6.4907 38 1 -1.0595 -0.0765 7.1580 39 1 0.9591 -0.1392 5.7493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252742552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:43 Heat of formation + Delta-G solvation = -34.058039 kcal Electronic energy + Delta-G solvation = -20224.280899 eV Core-core repulsion = 17323.867882 eV Total energy + Delta-G solvation = -2900.413017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77291 -39.87595 -36.94637 -34.49840 -32.94775 -32.20909 -31.62007 -30.26232 -28.20613 -26.17470 -24.34965 -23.31663 -22.98142 -21.54944 -21.02330 -19.11975 -17.99147 -17.24765 -16.74956 -16.63094 -16.35318 -15.80531 -15.66987 -14.87915 -14.73814 -14.41916 -14.32657 -14.04399 -13.69718 -13.58002 -13.44572 -13.23237 -12.97594 -12.73964 -12.45001 -12.22382 -11.99123 -11.89741 -11.86031 -11.62682 -11.47430 -11.28078 -10.78590 -10.57856 -9.63351 -9.41600 -9.01569 -8.35362 -6.37955 0.67618 0.75954 1.25524 1.29839 1.34517 2.25643 2.96205 3.01973 3.16205 3.41091 3.83457 4.02623 4.15184 4.21269 4.23478 4.28746 4.37155 4.39205 4.53510 4.61430 4.68927 4.73997 4.81704 4.93128 4.94160 4.99924 5.07053 5.22729 5.24110 5.30326 5.38282 5.44941 5.57311 5.75127 5.79183 5.97516 6.03388 6.04195 6.31840 6.41332 6.61764 6.72751 7.28290 8.79915 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.008991 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.966776 B = 3113.521799 C = 4307.064590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.080 3.920 3 H 0.075 0.925 4 O -0.392 6.392 5 C 0.051 3.949 6 C -0.163 4.163 7 C 0.066 3.934 8 H 0.073 0.927 9 N -0.652 5.652 10 C 0.209 3.791 11 H 0.045 0.955 12 C -0.513 4.513 13 H 0.041 0.959 14 C 0.029 3.971 15 N -0.938 5.938 16 Si 0.916 3.084 17 H -0.263 1.263 18 H -0.293 1.293 19 H -0.244 1.244 20 C -0.047 4.047 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.143 4.143 24 C -0.124 4.124 25 C -0.161 4.161 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.335 0.665 34 H 0.264 0.736 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 8.702 -3.554 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.022 3.978 3 H 0.093 0.907 4 O -0.312 6.312 5 C -0.026 4.026 6 C -0.202 4.202 7 C -0.046 4.046 8 H 0.091 0.909 9 N -0.280 5.280 10 C 0.099 3.901 11 H 0.062 0.938 12 C -0.552 4.552 13 H 0.059 0.941 14 C -0.170 4.170 15 N -0.577 5.577 16 Si 0.742 3.258 17 H -0.188 1.188 18 H -0.219 1.219 19 H -0.168 1.168 20 C -0.048 4.048 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.161 4.161 24 C -0.142 4.142 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.108 9.237 -3.568 12.189 hybrid contribution 1.623 -0.897 0.974 2.094 sum -5.486 8.340 -2.594 10.314 Atomic orbital electron populations 1.21490 0.92285 1.02233 1.01413 1.22837 0.96630 0.94859 0.83504 0.90699 1.88827 1.40219 1.68247 1.33932 1.23553 0.87467 0.96726 0.94811 1.23574 1.00924 0.98891 0.96847 1.22851 0.91255 0.95600 0.94860 0.90913 1.60962 1.32551 1.32738 1.01773 1.18657 0.90222 0.94681 0.86498 0.93760 1.21623 1.15480 0.96282 1.21839 0.94104 1.25674 0.95840 0.97595 0.97928 1.70035 1.22818 1.27518 1.37336 0.86287 0.77182 0.81573 0.80804 1.18795 1.21941 1.16814 1.20363 0.95463 0.93800 0.95161 1.20910 0.93164 0.99395 1.00025 1.21404 0.98258 0.99336 0.95126 1.21297 0.98824 0.98395 0.97571 1.21286 0.93113 1.00133 0.99679 1.21085 0.98771 1.01595 0.96531 0.93003 0.90779 0.92585 0.88101 0.91049 0.91921 0.92132 0.84652 0.92675 0.87065 0.84231 0.83646 0.84520 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 8.58 71.98 0.62 -2.66 16 2 C 0.08 2.40 4.05 30.97 0.13 2.53 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 O -0.39 -12.38 11.19 -148.98 -1.67 -14.05 16 5 C 0.05 1.47 7.72 72.67 0.56 2.04 16 6 C -0.16 -5.79 6.06 31.89 0.19 -5.59 16 7 C 0.07 2.30 3.32 45.90 0.15 2.45 16 8 H 0.07 2.64 7.45 -2.39 -0.02 2.62 16 9 N -0.65 -24.53 3.86 -472.12 -1.82 -26.35 16 10 C 0.21 9.11 1.84 43.42 0.08 9.19 16 11 H 0.04 2.02 4.24 -2.39 -0.01 2.01 16 12 C -0.51 -26.81 8.04 25.60 0.21 -26.60 16 13 H 0.04 2.39 8.00 -2.91 -0.02 2.36 16 14 C 0.03 1.60 5.47 84.65 0.46 2.06 16 15 N -0.94 -55.97 13.96 21.45 0.30 -55.67 16 16 Si 0.92 42.47 25.07 68.60 1.72 44.19 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 19 H -0.24 -10.44 6.06 99.48 0.60 -9.83 16 20 C -0.05 -1.93 4.86 -19.87 -0.10 -2.02 16 21 C -0.12 -4.35 9.28 22.27 0.21 -4.15 16 22 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 23 C -0.14 -4.14 10.05 22.27 0.22 -3.92 16 24 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 25 C -0.16 -6.24 8.83 22.27 0.20 -6.04 16 26 H 0.05 1.54 7.48 -2.39 -0.02 1.52 16 27 H 0.07 2.11 7.92 -2.39 -0.02 2.09 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.36 7.57 -2.39 -0.02 2.34 16 33 H 0.34 13.02 6.86 -89.70 -0.62 12.41 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.11 4.10 7.42 -2.91 -0.02 4.08 16 36 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.10 3.86 6.30 -2.91 -0.02 3.85 16 Total: -1.00 -60.45 308.97 2.23 -58.22 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.32 Total: 33.75 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.38 Total: -40.10 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.52 Total: -82.02 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.67 Total: -14.05 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.72 Total: 44.19 kcal Total: -60.45 2.23 -58.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252742552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.164 kcal (2) G-P(sol) polarization free energy of solvation -60.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds