Wall clock time and date at job start Mon Mar 30 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.87067 * 2 1 4 4 O 1.43739 * 109.87908 * 238.82937 * 2 1 3 5 5 C 1.44382 * 106.97968 * 267.09447 * 4 2 1 6 6 C 1.54995 * 103.48648 * 319.93604 * 5 4 2 7 7 C 1.54104 * 109.87664 * 121.00524 * 2 1 3 8 8 H 1.09000 * 110.49200 * 358.58072 * 7 2 1 9 9 N 1.46905 * 110.48576 * 236.07070 * 7 2 1 10 10 C 1.46899 * 111.00007 * 155.00039 * 9 7 2 11 11 H 1.08997 * 109.47537 * 34.99663 * 10 9 7 12 12 C 1.50697 * 109.47032 * 274.99643 * 10 9 7 13 13 H 1.08004 * 120.00485 * 302.84667 * 12 10 9 14 14 C 1.37879 * 119.99947 * 122.84949 * 12 10 9 15 15 N 1.31520 * 119.99919 * 186.42662 * 14 12 10 16 16 Si 1.86797 * 120.00204 * 6.42351 * 14 12 10 17 17 H 1.48508 * 109.47320 * 275.04263 * 16 14 12 18 18 H 1.48501 * 109.47130 * 35.04012 * 16 14 12 19 19 H 1.48494 * 109.47252 * 155.04192 * 16 14 12 20 20 C 1.50698 * 109.47281 * 154.99909 * 10 9 7 21 21 C 1.38231 * 120.00015 * 45.94177 * 20 10 9 22 22 C 1.38234 * 120.00203 * 179.79029 * 21 20 10 23 23 C 1.38238 * 119.99899 * 0.46277 * 22 21 20 24 24 C 1.38230 * 119.99880 * 359.77123 * 23 22 21 25 25 C 1.38232 * 120.00107 * 226.21952 * 20 10 9 26 26 H 1.09007 * 109.47372 * 298.99856 * 1 2 3 27 27 H 1.08996 * 109.47063 * 58.99516 * 1 2 3 28 28 H 1.08998 * 109.47704 * 179.00050 * 1 2 3 29 29 H 1.08998 * 110.61685 * 78.44060 * 5 4 2 30 30 H 1.09000 * 110.61805 * 201.43967 * 5 4 2 31 31 H 1.09000 * 110.91023 * 278.82469 * 6 5 4 32 32 H 1.09004 * 110.90163 * 155.22468 * 6 5 4 33 33 H 1.00899 * 110.99810 * 278.95294 * 9 7 2 34 34 H 0.96999 * 119.99568 * 179.97438 * 15 14 12 35 35 H 1.08007 * 120.00289 * 0.02562 * 21 20 10 36 36 H 1.08002 * 120.00180 * 180.25393 * 22 21 20 37 37 H 1.08000 * 120.00161 * 179.78590 * 23 22 21 38 38 H 1.08003 * 120.00517 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99981 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1566 5 6 2.2279 -2.0726 -0.7617 6 6 2.8324 -1.9515 0.6604 7 6 2.0539 -0.7465 1.2422 8 1 1.2238 -1.0885 1.8602 9 7 2.9511 0.1176 2.0209 10 6 2.9879 -0.2956 3.4301 11 1 2.9048 -1.3805 3.4930 12 6 1.8391 0.3399 4.1701 13 1 1.7295 1.4143 4.1770 14 6 0.9280 -0.4503 4.8382 15 7 -0.1425 0.0918 5.3766 16 14 1.2140 -2.2909 4.9788 17 1 0.6950 -2.9669 3.7626 18 1 2.6691 -2.5572 5.1102 19 1 0.5054 -2.8120 6.1752 20 6 4.2893 0.1452 4.0491 21 6 4.7568 1.4284 3.8351 22 6 5.9484 1.8341 4.4064 23 6 6.6773 0.9536 5.1838 24 6 6.2122 -0.3310 5.3938 25 6 5.0184 -0.7354 4.8261 26 1 -0.3634 0.4982 0.8989 27 1 -0.3633 0.5293 -0.8808 28 1 -0.3634 -1.0274 -0.0179 29 1 1.2812 -2.6119 -0.7318 30 1 2.9294 -2.5634 -1.4363 31 1 3.9002 -1.7383 0.6124 32 1 2.6431 -2.8541 1.2415 33 1 3.8782 0.1284 1.6229 34 1 -0.7836 -0.4642 5.8464 35 1 4.1892 2.1152 3.2247 36 1 6.3116 2.8380 4.2426 37 1 7.6100 1.2695 5.6274 38 1 6.7818 -1.0192 6.0009 39 1 4.6552 -1.7392 4.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252742553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:45 Heat of formation + Delta-G solvation = -21.950367 kcal Electronic energy + Delta-G solvation = -20097.552760 eV Core-core repulsion = 17197.664771 eV Total energy + Delta-G solvation = -2899.887989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.46689 -38.56579 -35.37568 -32.56317 -31.43505 -30.82600 -30.27633 -29.12826 -26.85064 -24.75998 -22.61924 -21.92909 -21.40656 -20.14851 -19.85430 -17.01196 -16.50653 -16.25812 -15.69728 -14.79443 -14.58482 -14.26382 -14.15045 -13.46473 -13.44649 -12.95685 -12.82266 -12.76432 -12.55698 -12.19348 -11.94099 -11.69174 -11.47744 -11.14872 -11.06007 -10.94315 -10.68023 -10.48887 -10.21441 -10.12436 -9.88783 -9.61685 -9.35005 -8.71507 -8.29871 -7.96740 -7.42755 -6.21462 -4.18289 2.01835 2.05809 3.11843 3.20620 3.23853 4.24537 4.24895 4.42023 4.76965 5.03381 5.13339 5.18018 5.38628 5.46529 5.50925 5.60485 5.62514 5.73103 5.79843 5.84295 5.91844 6.00750 6.06292 6.17799 6.20382 6.23976 6.36597 6.46426 6.57352 6.61950 6.64830 6.75211 7.06556 7.10639 7.27127 7.37998 7.44057 7.68341 7.88417 8.21550 8.55943 8.92518 9.40515 10.91088 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.008577 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.391316 B = 3263.669606 C = 4206.859980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.104 0.896 4 O -0.380 6.380 5 C 0.050 3.950 6 C -0.190 4.190 7 C 0.071 3.929 8 H 0.097 0.903 9 N -0.666 5.666 10 C 0.215 3.785 11 H 0.018 0.982 12 C -0.480 4.480 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.887 5.887 16 Si 0.864 3.136 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.286 1.286 20 C -0.045 4.045 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.146 4.146 24 C -0.125 4.125 25 C -0.132 4.132 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.318 0.682 34 H 0.265 0.735 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -3.257 -6.659 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.122 0.878 4 O -0.300 6.300 5 C -0.027 4.027 6 C -0.229 4.229 7 C -0.041 4.041 8 H 0.115 0.885 9 N -0.296 5.296 10 C 0.109 3.891 11 H 0.035 0.965 12 C -0.519 4.519 13 H 0.100 0.900 14 C -0.129 4.129 15 N -0.524 5.524 16 Si 0.692 3.308 17 H -0.202 1.202 18 H -0.190 1.190 19 H -0.212 1.212 20 C -0.046 4.046 21 C -0.120 4.120 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.143 4.143 25 C -0.151 4.151 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.055 -2.701 -6.628 10.050 hybrid contribution 0.457 -2.031 0.574 2.160 sum 7.513 -4.732 -6.054 10.746 Atomic orbital electron populations 1.22212 0.95739 1.01788 1.02572 1.22848 0.93583 0.97443 0.83924 0.87837 1.88856 1.86274 1.20442 1.34391 1.23371 0.99245 0.85025 0.95044 1.23935 1.00917 1.00903 0.97192 1.22882 0.96920 0.89780 0.94502 0.88491 1.60985 1.12230 1.53283 1.03064 1.18710 0.91310 0.93884 0.85222 0.96459 1.20819 1.05922 0.95767 1.29347 0.89981 1.25072 0.94689 0.97863 0.95302 1.69884 1.10474 1.35960 1.36110 0.87092 0.78786 0.86798 0.78120 1.20161 1.19005 1.21225 1.20520 0.94243 0.93713 0.96120 1.21017 0.95232 0.96035 0.99714 1.21084 0.95930 0.98900 0.98531 1.20894 1.00089 0.94360 1.01106 1.20952 0.96700 0.96237 1.00393 1.21074 0.95029 0.99703 0.99295 0.90461 0.92666 0.93179 0.92650 0.89741 0.90697 0.90945 0.86410 0.92438 0.85615 0.87043 0.87303 0.87242 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.30 37.16 0.35 -2.33 16 2 C 0.08 1.36 3.90 -26.15 -0.10 1.26 16 3 H 0.10 1.80 7.93 -51.93 -0.41 1.39 16 4 O -0.38 -6.29 11.19 -35.23 -0.39 -6.69 16 5 C 0.05 0.71 7.66 38.21 0.29 1.01 16 6 C -0.19 -2.95 6.83 -24.73 -0.17 -3.12 16 7 C 0.07 1.29 2.75 -66.18 -0.18 1.11 16 8 H 0.10 2.05 7.24 -51.93 -0.38 1.67 16 9 N -0.67 -12.97 5.57 -100.58 -0.56 -13.53 16 10 C 0.22 4.74 2.03 -70.02 -0.14 4.60 16 11 H 0.02 0.40 4.32 -51.93 -0.22 0.17 16 12 C -0.48 -12.68 8.79 -34.44 -0.30 -12.98 16 13 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 16 Si 0.86 20.37 26.94 -169.99 -4.58 15.80 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.26 -5.96 5.87 56.52 0.33 -5.62 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.04 -0.92 4.65 -104.63 -0.49 -1.41 16 21 C -0.10 -1.92 9.08 -39.59 -0.36 -2.28 16 22 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 23 C -0.15 -2.31 10.05 -39.58 -0.40 -2.71 16 24 C -0.12 -2.09 10.05 -39.58 -0.40 -2.48 16 25 C -0.13 -2.56 9.67 -39.58 -0.38 -2.94 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.78 8.11 -51.93 -0.42 0.35 16 29 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.11 7.57 -51.93 -0.39 0.72 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.32 5.68 7.51 -39.29 -0.30 5.39 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.13 2.39 7.90 -52.48 -0.41 1.97 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 39 H 0.11 2.14 7.06 -52.49 -0.37 1.77 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -28.31 316.87 -8.68 -36.98 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.92 Total: 10.60 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -2.78 Total: -22.84 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.21 Total: -38.62 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.39 Total: -6.69 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.58 Total: 15.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.31 -8.68 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252742553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.032 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds