Wall clock time and date at job start Mon Mar 30 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.87067 * 2 1 4 4 O 1.43739 * 109.87908 * 238.82937 * 2 1 3 5 5 C 1.44382 * 106.97968 * 267.09447 * 4 2 1 6 6 C 1.54995 * 103.48648 * 319.93604 * 5 4 2 7 7 C 1.54104 * 109.87664 * 121.00524 * 2 1 3 8 8 H 1.09000 * 110.49200 * 358.58072 * 7 2 1 9 9 N 1.46905 * 110.48576 * 236.07070 * 7 2 1 10 10 C 1.46899 * 111.00007 * 155.00039 * 9 7 2 11 11 H 1.08997 * 109.47537 * 34.99663 * 10 9 7 12 12 C 1.50697 * 109.47032 * 274.99643 * 10 9 7 13 13 H 1.08004 * 120.00485 * 302.84667 * 12 10 9 14 14 C 1.37879 * 119.99947 * 122.84949 * 12 10 9 15 15 N 1.31520 * 119.99919 * 186.42662 * 14 12 10 16 16 Si 1.86797 * 120.00204 * 6.42351 * 14 12 10 17 17 H 1.48508 * 109.47320 * 275.04263 * 16 14 12 18 18 H 1.48501 * 109.47130 * 35.04012 * 16 14 12 19 19 H 1.48494 * 109.47252 * 155.04192 * 16 14 12 20 20 C 1.50698 * 109.47281 * 154.99909 * 10 9 7 21 21 C 1.38231 * 120.00015 * 45.94177 * 20 10 9 22 22 C 1.38234 * 120.00203 * 179.79029 * 21 20 10 23 23 C 1.38238 * 119.99899 * 0.46277 * 22 21 20 24 24 C 1.38230 * 119.99880 * 359.77123 * 23 22 21 25 25 C 1.38232 * 120.00107 * 226.21952 * 20 10 9 26 26 H 1.09007 * 109.47372 * 298.99856 * 1 2 3 27 27 H 1.08996 * 109.47063 * 58.99516 * 1 2 3 28 28 H 1.08998 * 109.47704 * 179.00050 * 1 2 3 29 29 H 1.08998 * 110.61685 * 78.44060 * 5 4 2 30 30 H 1.09000 * 110.61805 * 201.43967 * 5 4 2 31 31 H 1.09000 * 110.91023 * 278.82469 * 6 5 4 32 32 H 1.09004 * 110.90163 * 155.22468 * 6 5 4 33 33 H 1.00899 * 110.99810 * 278.95294 * 9 7 2 34 34 H 0.96999 * 119.99568 * 179.97438 * 15 14 12 35 35 H 1.08007 * 120.00289 * 0.02562 * 21 20 10 36 36 H 1.08002 * 120.00180 * 180.25393 * 22 21 20 37 37 H 1.08000 * 120.00161 * 179.78590 * 23 22 21 38 38 H 1.08003 * 120.00517 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99981 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1566 5 6 2.2279 -2.0726 -0.7617 6 6 2.8324 -1.9515 0.6604 7 6 2.0539 -0.7465 1.2422 8 1 1.2238 -1.0885 1.8602 9 7 2.9511 0.1176 2.0209 10 6 2.9879 -0.2956 3.4301 11 1 2.9048 -1.3805 3.4930 12 6 1.8391 0.3399 4.1701 13 1 1.7295 1.4143 4.1770 14 6 0.9280 -0.4503 4.8382 15 7 -0.1425 0.0918 5.3766 16 14 1.2140 -2.2909 4.9788 17 1 0.6950 -2.9669 3.7626 18 1 2.6691 -2.5572 5.1102 19 1 0.5054 -2.8120 6.1752 20 6 4.2893 0.1452 4.0491 21 6 4.7568 1.4284 3.8351 22 6 5.9484 1.8341 4.4064 23 6 6.6773 0.9536 5.1838 24 6 6.2122 -0.3310 5.3938 25 6 5.0184 -0.7354 4.8261 26 1 -0.3634 0.4982 0.8989 27 1 -0.3633 0.5293 -0.8808 28 1 -0.3634 -1.0274 -0.0179 29 1 1.2812 -2.6119 -0.7318 30 1 2.9294 -2.5634 -1.4363 31 1 3.9002 -1.7383 0.6124 32 1 2.6431 -2.8541 1.2415 33 1 3.8782 0.1284 1.6229 34 1 -0.7836 -0.4642 5.8464 35 1 4.1892 2.1152 3.2247 36 1 6.3116 2.8380 4.2426 37 1 7.6100 1.2695 5.6274 38 1 6.7818 -1.0192 6.0009 39 1 4.6552 -1.7392 4.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252742553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:45 Heat of formation + Delta-G solvation = -39.785786 kcal Electronic energy + Delta-G solvation = -20098.326162 eV Core-core repulsion = 17197.664771 eV Total energy + Delta-G solvation = -2900.661391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84374 -39.95432 -36.93693 -34.47628 -32.97501 -32.12167 -31.64881 -30.51196 -28.63006 -26.24782 -24.18824 -23.31180 -22.67772 -21.60494 -21.44434 -19.02214 -17.89965 -17.59633 -17.01767 -16.50498 -16.08734 -15.84155 -15.49147 -14.96049 -14.83604 -14.65423 -14.21498 -14.19127 -14.07043 -13.69875 -13.39537 -13.07235 -12.93554 -12.83306 -12.55347 -12.33240 -12.20538 -11.92561 -11.78465 -11.64644 -11.61793 -11.44175 -10.75818 -10.62972 -9.67412 -9.41677 -9.02835 -8.31634 -6.32401 0.62777 0.67164 1.23204 1.27507 1.35545 2.26357 2.88858 2.98615 3.14525 3.38500 3.70941 3.93276 4.12589 4.18829 4.23360 4.24586 4.31520 4.36571 4.42974 4.45906 4.60515 4.66518 4.72367 4.83091 4.86715 4.90295 4.93968 5.02074 5.18446 5.24079 5.25108 5.33530 5.51277 5.70688 5.74343 5.92670 5.97242 6.11053 6.28306 6.47474 6.69763 6.89695 7.30866 8.85114 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.008577 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.391316 B = 3263.669606 C = 4206.859980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 H 0.095 0.905 4 O -0.387 6.387 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.065 3.935 8 H 0.065 0.935 9 N -0.670 5.670 10 C 0.227 3.773 11 H 0.014 0.986 12 C -0.477 4.477 13 H 0.033 0.967 14 C 0.019 3.981 15 N -0.940 5.940 16 Si 0.922 3.078 17 H -0.263 1.263 18 H -0.246 1.246 19 H -0.289 1.289 20 C -0.074 4.074 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.150 4.150 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.330 0.670 34 H 0.265 0.735 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.542 -4.674 -7.336 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.113 0.887 4 O -0.306 6.306 5 C -0.026 4.026 6 C -0.223 4.223 7 C -0.046 4.046 8 H 0.083 0.917 9 N -0.301 5.301 10 C 0.119 3.881 11 H 0.031 0.969 12 C -0.516 4.516 13 H 0.051 0.949 14 C -0.179 4.179 15 N -0.580 5.580 16 Si 0.747 3.253 17 H -0.188 1.188 18 H -0.170 1.170 19 H -0.215 1.215 20 C -0.075 4.075 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.140 4.140 25 C -0.169 4.169 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.936 -4.122 -7.334 13.019 hybrid contribution -0.324 -1.465 0.751 1.678 sum 9.613 -5.587 -6.583 12.921 Atomic orbital electron populations 1.22143 0.95341 1.02166 1.02176 1.22679 0.93860 0.97001 0.83719 0.88710 1.88846 1.86231 1.21714 1.33805 1.23573 1.00424 0.84002 0.94608 1.23875 1.01050 0.99443 0.97971 1.22860 0.96167 0.91197 0.94401 0.91700 1.60709 1.13134 1.54033 1.02213 1.18416 0.90727 0.93026 0.85904 0.96868 1.20931 1.07634 0.93581 1.29407 0.94873 1.25811 0.94301 1.02577 0.95199 1.70042 1.11942 1.37759 1.38298 0.86145 0.79704 0.81223 0.78257 1.18849 1.16960 1.21541 1.20420 0.94410 0.94941 0.97687 1.21028 0.96541 0.95403 1.00625 1.21427 0.94700 1.00496 0.97611 1.21370 1.00955 0.93538 0.99538 1.21330 0.95668 0.97322 0.99684 1.21190 0.96345 0.99500 0.99816 0.92869 0.90896 0.92511 0.91764 0.86706 0.89761 0.90530 0.85054 0.92602 0.86946 0.84178 0.83378 0.84053 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.30 71.98 0.67 -4.57 16 2 C 0.09 2.90 3.90 30.97 0.12 3.02 16 3 H 0.10 3.36 7.93 -2.39 -0.02 3.34 16 4 O -0.39 -12.09 11.19 -148.98 -1.67 -13.76 16 5 C 0.05 1.29 7.66 72.66 0.56 1.85 16 6 C -0.18 -5.39 6.83 31.89 0.22 -5.18 16 7 C 0.07 2.39 2.75 45.90 0.13 2.52 16 8 H 0.06 2.81 7.24 -2.39 -0.02 2.80 16 9 N -0.67 -26.63 5.57 -472.11 -2.63 -29.26 16 10 C 0.23 10.18 2.03 43.42 0.09 10.27 16 11 H 0.01 0.61 4.32 -2.39 -0.01 0.60 16 12 C -0.48 -26.49 8.79 25.60 0.23 -26.27 16 13 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 14 C 0.02 1.10 5.47 84.65 0.46 1.56 16 15 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 16 Si 0.92 42.77 26.94 68.60 1.85 44.62 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.25 -10.52 5.87 99.48 0.58 -9.93 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 C -0.07 -3.01 4.65 -19.87 -0.09 -3.10 16 21 C -0.12 -4.42 9.08 22.27 0.20 -4.22 16 22 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 23 C -0.14 -3.73 10.05 22.27 0.22 -3.50 16 24 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 25 C -0.15 -5.55 9.67 22.27 0.22 -5.34 16 26 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.74 8.11 -2.39 -0.02 1.72 16 29 H 0.06 1.55 8.11 -2.39 -0.02 1.53 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 2.31 7.57 -2.39 -0.02 2.29 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.33 11.79 7.51 -89.69 -0.67 11.12 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.11 4.41 7.90 -2.91 -0.02 4.39 16 36 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.11 3.96 7.06 -2.91 -0.02 3.94 16 Total: -1.00 -64.48 316.87 1.55 -62.93 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.24 Total: 32.84 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 3.46 Total: -39.94 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.33 Total: -86.70 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.67 Total: -13.76 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.85 Total: 44.62 kcal Total: -64.48 1.55 -62.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252742553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.147 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds