Wall clock time and date at job start Mon Mar 30 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35905 * 116.99922 * 2 1 4 4 C 1.38754 * 120.04998 * 359.97438 * 3 2 1 5 5 C 1.38133 * 119.93638 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05725 * 0.02598 * 5 4 3 7 7 C 1.38244 * 120.11174 * 359.69472 * 6 5 4 8 8 C 1.38167 * 120.05622 * 0.55734 * 7 6 5 9 9 C 1.50703 * 120.02853 * 179.74366 * 8 7 6 10 10 N 1.46900 * 109.46883 * 254.57899 * 9 8 7 11 11 C 1.47900 * 111.00065 * 65.69811 * 10 9 8 12 12 C 1.53991 * 107.05922 * 145.84223 * 11 10 9 13 13 C 1.54602 * 105.14142 * 358.77419 * 12 11 10 14 14 H 1.08996 * 110.72176 * 96.57888 * 13 12 11 15 15 C 1.50693 * 110.72363 * 219.68840 * 13 12 11 16 16 H 1.07997 * 120.00284 * 118.54871 * 15 13 12 17 17 C 1.37881 * 119.99989 * 298.54006 * 15 13 12 18 18 N 1.31515 * 120.00128 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99646 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.46930 * 90.00264 * 19 17 15 21 21 H 1.48492 * 109.47494 * 329.99706 * 19 17 15 22 22 H 1.48503 * 109.46622 * 209.99782 * 19 17 15 23 23 C 1.48533 * 110.99817 * 183.08988 * 10 9 8 24 24 H 1.08994 * 109.47830 * 300.00031 * 1 2 3 25 25 H 1.09007 * 109.47273 * 60.00587 * 1 2 3 26 26 H 1.09007 * 109.47388 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.03290 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.96486 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.93951 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.97419 * 180.27679 * 7 6 5 31 31 H 1.08997 * 109.46687 * 134.57858 * 9 8 7 32 32 H 1.08994 * 109.46570 * 14.57552 * 9 8 7 33 33 H 1.08999 * 109.92052 * 26.48971 * 11 10 9 34 34 H 1.09003 * 110.08069 * 265.28410 * 11 10 9 35 35 H 1.09000 * 110.31031 * 239.86180 * 12 11 10 36 36 H 1.09001 * 110.31071 * 117.68841 * 12 11 10 37 37 H 0.96995 * 120.00014 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.66468 * 81.84413 * 23 10 9 39 39 H 1.08995 * 110.66941 * 318.71889 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0558 2.5172 0.0047 8 6 3.4310 1.2849 0.0000 9 6 4.2537 0.0222 0.0011 10 7 4.2178 -0.5867 -1.3352 11 6 4.8887 0.2781 -2.3299 12 6 5.5674 -0.6520 -3.3525 13 6 5.2658 -2.0851 -2.8573 14 1 4.4013 -2.4986 -3.3765 15 6 6.4687 -2.9752 -3.0358 16 1 6.9341 -3.4330 -2.1755 17 6 6.9749 -3.2052 -4.2975 18 7 8.0244 -3.9824 -4.4533 19 14 6.1701 -2.4130 -5.7854 20 1 6.7992 -1.0930 -6.0442 21 1 4.7202 -2.2277 -5.5241 22 1 6.3514 -3.2887 -6.9710 23 6 4.9581 -1.8743 -1.3535 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2126 2.3203 -0.0014 28 1 1.3338 4.5114 -0.0019 29 1 3.7920 4.6382 -0.0016 30 1 5.1343 2.5753 0.0088 31 1 3.8447 -0.6772 0.7302 32 1 5.2842 0.2603 0.2644 33 1 5.6378 0.8983 -1.8377 34 1 4.1556 0.9096 -2.8318 35 1 6.6430 -0.4759 -3.3686 36 1 5.1431 -0.4974 -4.3445 37 1 8.3807 -4.1440 -5.3408 38 1 4.3339 -2.6823 -0.9716 39 1 5.8811 -1.7956 -0.7792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:04 Heat of formation + Delta-G solvation = -3.522279 kcal Electronic energy + Delta-G solvation = -19700.618045 eV Core-core repulsion = 16801.529158 eV Total energy + Delta-G solvation = -2899.088887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22351 -38.15333 -37.20189 -33.60524 -32.03055 -30.22156 -29.79872 -28.34274 -27.32189 -25.62560 -23.58945 -22.11901 -21.51501 -20.10722 -19.44341 -17.89418 -16.60414 -16.19388 -15.73463 -15.64666 -15.16364 -14.80435 -14.48411 -13.85418 -13.74230 -13.50731 -12.96384 -12.60390 -12.55877 -12.49634 -12.01783 -11.62346 -11.57095 -11.27012 -11.09380 -10.97267 -10.73373 -10.49992 -10.43587 -9.91692 -9.77618 -9.43759 -8.96208 -8.85418 -8.52028 -8.09021 -7.74784 -6.04457 -4.03351 1.31663 1.48475 3.32752 3.36840 3.41495 3.46016 3.75566 4.46270 4.69237 4.74492 4.84198 5.04032 5.07100 5.12095 5.27476 5.29789 5.39471 5.45996 5.60314 5.61738 5.67294 5.84261 5.90321 6.06640 6.13095 6.28014 6.35282 6.37530 6.44519 6.55355 6.63714 6.81304 6.85873 6.88343 7.08668 7.42785 7.48843 7.58695 7.72485 7.87168 8.56057 8.98757 9.58833 11.08746 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029230 B = 0.005035 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.701606 B = 5559.193759 C = 5790.243540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.150 3.850 4 C -0.216 4.216 5 C -0.087 4.087 6 C -0.162 4.162 7 C -0.077 4.077 8 C -0.104 4.104 9 C 0.095 3.905 10 N -0.511 5.511 11 C 0.045 3.955 12 C -0.141 4.141 13 C 0.017 3.983 14 H 0.038 0.962 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.263 1.263 22 H -0.294 1.294 23 C 0.053 3.947 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 14.093 9.634 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.208 6.208 3 C 0.104 3.896 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.105 4.105 9 C -0.033 4.033 10 N -0.235 5.235 11 C -0.083 4.083 12 C -0.179 4.179 13 C -0.002 4.002 14 H 0.056 0.944 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.188 1.188 22 H -0.221 1.221 23 C -0.074 4.074 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.882 13.723 9.382 21.658 hybrid contribution 0.261 0.825 -0.725 1.128 sum -13.621 14.548 8.658 21.728 Atomic orbital electron populations 1.23023 0.79202 1.03822 1.00713 1.86232 1.20436 1.26270 1.87894 1.18813 0.91708 0.84213 0.94860 1.21204 0.99802 0.92497 1.09963 1.20859 0.94645 0.96757 0.98236 1.20965 0.93894 0.98164 1.04963 1.20939 0.99812 0.91164 0.97680 1.19256 0.90862 0.95552 1.04802 1.20986 0.96474 0.92822 0.93050 1.64814 1.51005 1.03952 1.03690 1.22756 0.95804 0.95510 0.94186 1.22908 1.00102 0.97923 0.97014 1.20026 0.97378 0.91711 0.91120 0.94366 1.20987 1.11375 1.28067 0.94435 0.90844 1.24966 0.94509 0.94683 0.98780 1.69905 1.23388 1.37807 1.23048 0.86910 0.80864 0.79027 0.82364 1.20408 1.18779 1.22118 1.23184 0.95039 0.89783 0.99385 0.93215 0.92923 0.88336 0.85779 0.86245 0.86200 0.85693 0.90097 0.94310 0.94876 0.92119 0.91299 0.93375 0.92718 0.91253 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.26 9.83 -19.44 -0.19 -4.45 16 3 C 0.15 2.14 6.66 -39.22 -0.26 1.87 16 4 C -0.22 -2.55 9.04 -39.43 -0.36 -2.91 16 5 C -0.09 -0.94 10.04 -39.60 -0.40 -1.34 16 6 C -0.16 -1.82 10.04 -39.56 -0.40 -2.22 16 7 C -0.08 -0.99 9.60 -39.61 -0.38 -1.37 16 8 C -0.10 -1.53 4.77 -104.47 -0.50 -2.02 16 9 C 0.09 1.53 4.49 -4.97 -0.02 1.51 16 10 N -0.51 -9.71 5.29 -231.90 -1.23 -10.93 16 11 C 0.05 0.87 5.98 -2.76 -0.02 0.85 16 12 C -0.14 -3.14 4.69 -25.37 -0.12 -3.26 16 13 C 0.02 0.42 2.46 -89.91 -0.22 0.19 16 14 H 0.04 0.97 7.36 -51.93 -0.38 0.59 16 15 C -0.51 -14.46 9.00 -34.44 -0.31 -14.77 16 16 H 0.07 2.24 8.03 -52.49 -0.42 1.82 16 17 C 0.07 2.10 5.46 -17.82 -0.10 2.00 16 18 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 19 Si 0.88 22.17 24.72 -169.99 -4.20 17.97 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.26 -6.45 6.38 56.52 0.36 -6.09 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 C 0.05 1.11 5.97 -1.90 -0.01 1.10 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.05 0.47 7.66 -51.92 -0.40 0.07 16 26 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.13 1.45 8.00 -52.49 -0.42 1.03 16 31 H 0.08 1.29 8.01 -51.93 -0.42 0.87 16 32 H 0.04 0.60 7.74 -51.93 -0.40 0.20 16 33 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.60 7.80 -51.93 -0.40 1.19 16 36 H 0.05 1.07 5.94 -51.93 -0.31 0.76 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.87 7.92 -51.93 -0.41 0.45 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -31.60 311.31 -8.23 -39.83 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.98 Total: -0.93 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.10 Total: -19.11 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.45 Total: -38.01 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.19 Total: -4.45 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.20 Total: 17.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.60 -8.23 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.308 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds