Wall clock time and date at job start Mon Mar 30 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35905 * 116.99922 * 2 1 4 4 C 1.38754 * 120.04998 * 359.97438 * 3 2 1 5 5 C 1.38133 * 119.93638 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05725 * 0.02598 * 5 4 3 7 7 C 1.38244 * 120.11174 * 359.69472 * 6 5 4 8 8 C 1.38167 * 120.05622 * 0.55734 * 7 6 5 9 9 C 1.50703 * 120.02853 * 179.74366 * 8 7 6 10 10 N 1.46900 * 109.46883 * 254.57899 * 9 8 7 11 11 C 1.47900 * 111.00065 * 65.69811 * 10 9 8 12 12 C 1.53991 * 107.05922 * 145.84223 * 11 10 9 13 13 C 1.54602 * 105.14142 * 358.77419 * 12 11 10 14 14 H 1.08996 * 110.72176 * 96.57888 * 13 12 11 15 15 C 1.50693 * 110.72363 * 219.68840 * 13 12 11 16 16 H 1.07997 * 120.00284 * 118.54871 * 15 13 12 17 17 C 1.37881 * 119.99989 * 298.54006 * 15 13 12 18 18 N 1.31515 * 120.00128 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99646 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.46930 * 90.00264 * 19 17 15 21 21 H 1.48492 * 109.47494 * 329.99706 * 19 17 15 22 22 H 1.48503 * 109.46622 * 209.99782 * 19 17 15 23 23 C 1.48533 * 110.99817 * 183.08988 * 10 9 8 24 24 H 1.08994 * 109.47830 * 300.00031 * 1 2 3 25 25 H 1.09007 * 109.47273 * 60.00587 * 1 2 3 26 26 H 1.09007 * 109.47388 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.03290 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.96486 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.93951 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.97419 * 180.27679 * 7 6 5 31 31 H 1.08997 * 109.46687 * 134.57858 * 9 8 7 32 32 H 1.08994 * 109.46570 * 14.57552 * 9 8 7 33 33 H 1.08999 * 109.92052 * 26.48971 * 11 10 9 34 34 H 1.09003 * 110.08069 * 265.28410 * 11 10 9 35 35 H 1.09000 * 110.31031 * 239.86180 * 12 11 10 36 36 H 1.09001 * 110.31071 * 117.68841 * 12 11 10 37 37 H 0.96995 * 120.00014 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.66468 * 81.84413 * 23 10 9 39 39 H 1.08995 * 110.66941 * 318.71889 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0558 2.5172 0.0047 8 6 3.4310 1.2849 0.0000 9 6 4.2537 0.0222 0.0011 10 7 4.2178 -0.5867 -1.3352 11 6 4.8887 0.2781 -2.3299 12 6 5.5674 -0.6520 -3.3525 13 6 5.2658 -2.0851 -2.8573 14 1 4.4013 -2.4986 -3.3765 15 6 6.4687 -2.9752 -3.0358 16 1 6.9341 -3.4330 -2.1755 17 6 6.9749 -3.2052 -4.2975 18 7 8.0244 -3.9824 -4.4533 19 14 6.1701 -2.4130 -5.7854 20 1 6.7992 -1.0930 -6.0442 21 1 4.7202 -2.2277 -5.5241 22 1 6.3514 -3.2887 -6.9710 23 6 4.9581 -1.8743 -1.3535 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2126 2.3203 -0.0014 28 1 1.3338 4.5114 -0.0019 29 1 3.7920 4.6382 -0.0016 30 1 5.1343 2.5753 0.0088 31 1 3.8447 -0.6772 0.7302 32 1 5.2842 0.2603 0.2644 33 1 5.6378 0.8983 -1.8377 34 1 4.1556 0.9096 -2.8318 35 1 6.6430 -0.4759 -3.3686 36 1 5.1431 -0.4974 -4.3445 37 1 8.3807 -4.1440 -5.3408 38 1 4.3339 -2.6823 -0.9716 39 1 5.8811 -1.7956 -0.7792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:04 Heat of formation + Delta-G solvation = -24.481241 kcal Electronic energy + Delta-G solvation = -19701.526894 eV Core-core repulsion = 16801.529158 eV Total energy + Delta-G solvation = -2899.997736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19266 -39.66935 -38.17035 -35.34308 -33.77030 -31.44421 -30.90475 -30.07478 -28.15264 -27.10247 -25.36366 -23.02399 -22.67662 -21.58520 -21.29462 -18.90512 -18.59618 -17.25639 -16.96876 -16.70044 -16.49626 -16.35205 -15.63999 -15.39436 -15.01724 -14.75283 -14.53278 -14.30981 -13.86384 -13.53451 -13.23362 -13.11326 -12.89228 -12.64850 -12.47339 -12.39110 -12.08973 -11.91303 -11.83611 -11.68732 -11.54273 -11.31244 -11.03566 -10.74094 -9.80005 -9.27721 -8.99611 -8.30525 -6.34279 0.40184 0.58156 1.32446 1.36094 1.47173 2.34006 2.53446 2.80440 3.04547 3.31719 3.76959 3.94180 3.97105 4.09887 4.16975 4.31619 4.35771 4.41270 4.44656 4.50848 4.56161 4.63077 4.66792 4.76958 4.77909 4.85718 4.88409 5.06043 5.10356 5.16426 5.27068 5.45853 5.52280 5.59097 5.62134 5.66458 5.95050 6.00070 6.20519 6.34319 6.60960 6.71335 7.31603 8.86224 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029230 B = 0.005035 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.701606 B = 5559.193759 C = 5790.243540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.327 6.327 3 C 0.132 3.868 4 C -0.218 4.218 5 C -0.083 4.083 6 C -0.163 4.163 7 C -0.085 4.085 8 C -0.131 4.131 9 C 0.099 3.901 10 N -0.512 5.512 11 C 0.056 3.944 12 C -0.139 4.139 13 C 0.013 3.987 14 H 0.030 0.970 15 C -0.515 4.515 16 H 0.035 0.965 17 C 0.018 3.982 18 N -0.949 5.949 19 Si 0.942 3.058 20 H -0.263 1.263 21 H -0.250 1.250 22 H -0.292 1.292 23 C 0.062 3.938 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.266 0.734 38 H 0.071 0.929 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 17.017 9.470 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.086 3.914 4 C -0.237 4.237 5 C -0.101 4.101 6 C -0.181 4.181 7 C -0.103 4.103 8 C -0.132 4.132 9 C -0.028 4.028 10 N -0.236 5.236 11 C -0.072 4.072 12 C -0.177 4.177 13 C -0.007 4.007 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.053 0.947 17 C -0.180 4.180 18 N -0.590 5.590 19 Si 0.767 3.233 20 H -0.188 1.188 21 H -0.174 1.174 22 H -0.219 1.219 23 C -0.066 4.066 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.126 0.874 27 H 0.163 0.837 28 H 0.169 0.831 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.985 16.664 9.240 24.872 hybrid contribution 0.886 -0.097 -0.562 1.054 sum -15.099 16.567 8.678 24.037 Atomic orbital electron populations 1.23256 0.77228 1.04958 1.01925 1.86177 1.22683 1.26978 1.88133 1.19043 0.91832 0.84958 0.95560 1.21500 1.00926 0.92073 1.09195 1.21289 0.94840 0.97570 0.96364 1.21300 0.94289 0.98614 1.03876 1.21110 1.00430 0.91164 0.97636 1.19221 0.91272 0.95221 1.07448 1.20939 0.97077 0.93692 0.91137 1.64802 1.50194 1.03153 1.05472 1.22665 0.96200 0.94904 0.93455 1.22782 0.99666 0.97001 0.98247 1.19937 0.95014 0.92242 0.93502 0.95205 1.21226 1.12451 1.28350 0.93349 0.94680 1.25798 0.94980 0.95227 1.01959 1.70043 1.25240 1.39703 1.23987 0.85909 0.80520 0.78563 0.78303 1.18827 1.17433 1.21911 1.22974 0.95021 0.91477 0.97085 0.91386 0.92189 0.87409 0.83651 0.83139 0.83710 0.85052 0.90569 0.94031 0.93447 0.90906 0.92659 0.92901 0.92488 0.91073 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.00 9.83 -92.48 -0.91 -9.91 16 3 C 0.13 3.52 6.66 22.51 0.15 3.67 16 4 C -0.22 -4.49 9.04 22.37 0.20 -4.29 16 5 C -0.08 -1.47 10.04 22.26 0.22 -1.24 16 6 C -0.16 -3.10 10.04 22.28 0.22 -2.87 16 7 C -0.08 -1.99 9.60 22.25 0.21 -1.77 16 8 C -0.13 -3.65 4.77 -19.77 -0.09 -3.74 16 9 C 0.10 3.13 4.49 85.56 0.38 3.52 16 10 N -0.51 -19.03 5.29 -887.59 -4.69 -23.73 16 11 C 0.06 2.03 5.98 86.45 0.52 2.54 16 12 C -0.14 -6.01 4.69 31.47 0.15 -5.87 16 13 C 0.01 0.61 2.46 -10.33 -0.03 0.58 16 14 H 0.03 1.50 7.36 -2.39 -0.02 1.49 16 15 C -0.52 -30.08 9.00 25.60 0.23 -29.85 16 16 H 0.03 2.25 8.03 -2.91 -0.02 2.22 16 17 C 0.02 1.04 5.46 84.66 0.46 1.50 16 18 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 19 Si 0.94 45.62 24.72 68.60 1.70 47.32 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.25 -11.53 6.38 99.48 0.63 -10.89 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 23 C 0.06 2.63 5.97 86.65 0.52 3.15 16 24 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 25 H 0.06 0.94 7.66 -2.38 -0.02 0.92 16 26 H 0.11 1.61 8.14 -2.38 -0.02 1.60 16 27 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 28 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.13 2.78 8.00 -2.91 -0.02 2.76 16 31 H 0.08 2.43 8.01 -2.39 -0.02 2.41 16 32 H 0.04 1.27 7.74 -2.39 -0.02 1.25 16 33 H 0.05 1.59 7.64 -2.39 -0.02 1.57 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 2.52 7.80 -2.39 -0.02 2.51 16 36 H 0.05 2.22 5.94 -2.39 -0.01 2.21 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 Total: -1.00 -69.01 311.31 1.60 -67.41 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.95 Total: 11.91 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 4.26 Total: -33.20 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -4.39 Total: -83.52 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.91 Total: -9.91 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.70 Total: 47.32 kcal Total: -69.01 1.60 -67.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.930 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds