Wall clock time and date at job start Mon Mar 30 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 117.00198 * 2 1 4 4 C 1.38753 * 120.05473 * 0.24822 * 3 2 1 5 5 C 1.38120 * 119.94639 * 180.32419 * 4 3 2 6 6 C 1.38292 * 120.05221 * 359.68025 * 5 4 3 7 7 C 1.38245 * 120.11172 * 0.02562 * 6 5 4 8 8 C 1.38162 * 120.05522 * 0.02865 * 7 6 5 9 9 C 1.50706 * 120.02901 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47055 * 259.99891 * 9 8 7 11 11 C 1.48561 * 110.99969 * 290.12245 * 10 9 8 12 12 C 1.54385 * 104.59551 * 200.96133 * 11 10 9 13 13 C 1.54265 * 105.05914 * 23.85405 * 12 11 10 14 14 H 1.08999 * 110.32392 * 241.00075 * 13 12 11 15 15 C 1.50695 * 110.32421 * 118.89357 * 13 12 11 16 16 H 1.07999 * 120.00538 * 241.45097 * 15 13 12 17 17 C 1.37881 * 119.99661 * 61.45445 * 15 13 12 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.48563 * 111.00105 * 174.70766 * 10 9 8 24 24 H 1.08997 * 109.47373 * 60.00209 * 1 2 3 25 25 H 1.08998 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47021 * 300.00133 * 1 2 3 27 27 H 1.08007 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97987 * 179.70476 * 5 4 3 29 29 H 1.07996 * 119.94548 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.97165 * 179.97438 * 7 6 5 31 31 H 1.08995 * 109.47053 * 139.99667 * 9 8 7 32 32 H 1.09004 * 109.46513 * 19.99859 * 9 8 7 33 33 H 1.08997 * 110.40963 * 82.18802 * 11 10 9 34 34 H 1.08999 * 110.51250 * 319.78718 * 11 10 9 35 35 H 1.09004 * 110.32210 * 264.96035 * 12 11 10 36 36 H 1.08996 * 110.32706 * 142.75053 * 12 11 10 37 37 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 38 38 H 1.09003 * 110.41243 * 40.25544 * 23 10 9 39 39 H 1.09005 * 110.40699 * 277.82163 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9208 3.6048 -0.0016 6 6 3.3019 3.6758 -0.0069 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0221 0.0002 10 7 4.3145 -0.5232 -1.3625 11 6 2.9935 -1.0588 -1.7810 12 6 3.3171 -2.0396 -2.9285 13 6 4.7828 -2.4602 -2.6947 14 1 5.4002 -2.1699 -3.5448 15 6 4.8708 -3.9475 -2.4687 16 1 5.2503 -4.3301 -1.5328 17 6 4.4668 -4.8200 -3.4570 18 7 4.0041 -4.3542 -4.5966 19 14 4.5765 -6.6637 -3.1772 20 1 3.3087 -7.1494 -2.5754 21 1 5.7053 -6.9587 -2.2586 22 1 4.8026 -7.3488 -4.4752 23 6 5.2213 -1.6982 -1.4258 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2128 2.3204 0.0097 28 1 1.3340 4.5114 -0.0024 29 1 3.7922 4.6380 -0.0117 30 1 5.1344 2.5752 -0.0105 31 1 3.7949 -0.7102 0.6644 32 1 5.2625 0.2458 0.3474 33 1 2.3528 -0.2530 -2.1391 34 1 2.5155 -1.5849 -0.9547 35 1 3.2155 -1.5411 -3.8925 36 1 2.6614 -2.9089 -2.8798 37 1 3.9468 -3.3969 -4.7417 38 1 5.0939 -2.3248 -0.5430 39 1 6.2580 -1.3738 -1.5163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:06 Heat of formation + Delta-G solvation = -11.731905 kcal Electronic energy + Delta-G solvation = -19922.476296 eV Core-core repulsion = 17023.031413 eV Total energy + Delta-G solvation = -2899.444883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30338 -37.89438 -37.29547 -33.85391 -31.91008 -30.10624 -29.26164 -28.06922 -27.28983 -25.16275 -23.68887 -22.09643 -21.50657 -20.05329 -19.39825 -17.95281 -16.79123 -16.22001 -15.90016 -15.53377 -14.90472 -14.44977 -14.25975 -13.92741 -13.71587 -13.50607 -12.90132 -12.64610 -12.56469 -12.01672 -11.74588 -11.52761 -11.32465 -11.22889 -11.11821 -10.80092 -10.52467 -10.46291 -10.23551 -10.07951 -9.79411 -9.38359 -8.83599 -8.40753 -8.25018 -8.12319 -7.70239 -6.28100 -3.99674 1.36527 1.49508 3.35611 3.45548 3.49184 3.64955 3.78416 4.56521 4.74948 4.82716 4.92496 5.06394 5.07967 5.14660 5.35993 5.37538 5.45024 5.49678 5.64958 5.71376 5.83061 5.92504 6.12371 6.14560 6.27375 6.37791 6.41765 6.47466 6.59204 6.61794 6.80522 6.84137 7.03611 7.08875 7.39877 7.45154 7.58209 7.70014 7.80911 8.34742 8.49334 8.95354 9.72685 11.10775 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032860 B = 0.004977 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.907763 B = 5624.638815 C = 6033.687983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.135 3.865 4 C -0.212 4.212 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.069 4.069 8 C -0.097 4.097 9 C 0.090 3.910 10 N -0.512 5.512 11 C 0.050 3.950 12 C -0.115 4.115 13 C 0.034 3.966 14 H 0.023 0.977 15 C -0.594 4.594 16 H 0.048 0.952 17 C 0.019 3.981 18 N -0.913 5.913 19 Si 1.069 2.931 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.047 3.953 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.273 0.727 38 H 0.036 0.964 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 13.650 10.528 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.089 3.911 4 C -0.231 4.231 5 C -0.107 4.107 6 C -0.179 4.179 7 C -0.087 4.087 8 C -0.098 4.098 9 C -0.039 4.039 10 N -0.236 5.236 11 C -0.078 4.078 12 C -0.154 4.154 13 C 0.015 3.985 14 H 0.041 0.959 15 C -0.632 4.632 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.549 5.549 19 Si 0.898 3.102 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.820 12.404 9.476 16.659 hybrid contribution -0.343 1.110 1.276 1.725 sum -6.163 13.513 10.752 18.336 Atomic orbital electron populations 1.23034 0.79080 1.03998 1.00870 1.86327 1.20825 1.26308 1.88193 1.18909 0.91924 0.84389 0.95903 1.21171 0.99769 0.92432 1.09684 1.20854 0.94690 0.96717 0.98416 1.20994 0.93890 0.98221 1.04815 1.20881 0.99907 0.90892 0.97059 1.19256 0.90416 0.95946 1.04227 1.21004 0.98120 0.92871 0.91867 1.65476 1.08616 1.29351 1.20149 1.23095 0.90254 0.96499 0.97954 1.22543 1.00503 0.96952 0.95385 1.19511 0.91659 0.95058 0.92313 0.95916 1.22047 1.47168 0.90615 1.03394 0.93418 1.25747 0.93742 1.06073 0.92976 1.70732 1.42716 1.17030 1.24468 0.83547 0.76230 0.74825 0.75617 1.21619 1.21578 1.21053 1.23156 0.95525 0.89509 0.99788 0.92744 0.88237 0.93074 0.85783 0.86237 0.86170 0.85457 0.93853 0.90722 0.92564 0.93552 0.94153 0.91554 0.91508 0.94531 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.60 6.24 -19.44 -0.12 -4.72 16 3 C 0.13 2.01 5.79 -39.22 -0.23 1.78 16 4 C -0.21 -2.65 9.04 -39.43 -0.36 -3.00 16 5 C -0.09 -1.00 10.04 -39.60 -0.40 -1.40 16 6 C -0.16 -1.88 10.04 -39.56 -0.40 -2.27 16 7 C -0.07 -0.92 9.66 -39.61 -0.38 -1.30 16 8 C -0.10 -1.51 5.29 -104.47 -0.55 -2.07 16 9 C 0.09 1.53 4.84 -4.98 -0.02 1.51 16 10 N -0.51 -10.40 5.36 -231.41 -1.24 -11.64 16 11 C 0.05 1.04 4.53 -2.18 -0.01 1.03 16 12 C -0.12 -2.82 5.03 -25.34 -0.13 -2.94 16 13 C 0.03 0.88 2.65 -90.39 -0.24 0.64 16 14 H 0.02 0.64 8.04 -51.93 -0.42 0.22 16 15 C -0.59 -16.88 8.37 -34.44 -0.29 -17.17 16 16 H 0.05 1.35 7.58 -52.49 -0.40 0.95 16 17 C 0.02 0.54 5.09 -17.82 -0.09 0.45 16 18 N -0.91 -27.69 13.27 55.43 0.74 -26.96 16 19 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.05 1.06 6.01 -2.18 -0.01 1.05 16 24 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 27 H 0.12 1.27 6.30 -52.48 -0.33 0.94 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.49 8.04 -52.49 -0.42 1.07 16 31 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 32 H 0.07 1.15 7.99 -51.93 -0.42 0.74 16 33 H 0.06 1.15 7.01 -51.93 -0.36 0.78 16 34 H 0.05 0.99 6.40 -51.93 -0.33 0.65 16 35 H 0.04 0.98 7.92 -51.93 -0.41 0.57 16 36 H 0.07 1.76 7.23 -51.93 -0.38 1.39 16 37 H 0.27 8.27 6.00 -40.82 -0.24 8.02 16 38 H 0.04 0.83 7.56 -51.93 -0.39 0.44 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -31.54 307.70 -8.97 -40.50 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.78 Total: 0.25 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.12 Total: -22.43 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.51 Total: -38.60 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.12 Total: -4.72 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.54 -8.97 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.772 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds