Wall clock time and date at job start Mon Mar 30 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 117.00198 * 2 1 4 4 C 1.38753 * 120.05473 * 0.24822 * 3 2 1 5 5 C 1.38120 * 119.94639 * 180.32419 * 4 3 2 6 6 C 1.38292 * 120.05221 * 359.68025 * 5 4 3 7 7 C 1.38245 * 120.11172 * 0.02562 * 6 5 4 8 8 C 1.38162 * 120.05522 * 0.02865 * 7 6 5 9 9 C 1.50706 * 120.02901 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47055 * 259.99891 * 9 8 7 11 11 C 1.48561 * 110.99969 * 290.12245 * 10 9 8 12 12 C 1.54385 * 104.59551 * 200.96133 * 11 10 9 13 13 C 1.54265 * 105.05914 * 23.85405 * 12 11 10 14 14 H 1.08999 * 110.32392 * 241.00075 * 13 12 11 15 15 C 1.50695 * 110.32421 * 118.89357 * 13 12 11 16 16 H 1.07999 * 120.00538 * 241.45097 * 15 13 12 17 17 C 1.37881 * 119.99661 * 61.45445 * 15 13 12 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.48563 * 111.00105 * 174.70766 * 10 9 8 24 24 H 1.08997 * 109.47373 * 60.00209 * 1 2 3 25 25 H 1.08998 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47021 * 300.00133 * 1 2 3 27 27 H 1.08007 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97987 * 179.70476 * 5 4 3 29 29 H 1.07996 * 119.94548 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.97165 * 179.97438 * 7 6 5 31 31 H 1.08995 * 109.47053 * 139.99667 * 9 8 7 32 32 H 1.09004 * 109.46513 * 19.99859 * 9 8 7 33 33 H 1.08997 * 110.40963 * 82.18802 * 11 10 9 34 34 H 1.08999 * 110.51250 * 319.78718 * 11 10 9 35 35 H 1.09004 * 110.32210 * 264.96035 * 12 11 10 36 36 H 1.08996 * 110.32706 * 142.75053 * 12 11 10 37 37 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 38 38 H 1.09003 * 110.41243 * 40.25544 * 23 10 9 39 39 H 1.09005 * 110.40699 * 277.82163 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9208 3.6048 -0.0016 6 6 3.3019 3.6758 -0.0069 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0221 0.0002 10 7 4.3145 -0.5232 -1.3625 11 6 2.9935 -1.0588 -1.7810 12 6 3.3171 -2.0396 -2.9285 13 6 4.7828 -2.4602 -2.6947 14 1 5.4002 -2.1699 -3.5448 15 6 4.8708 -3.9475 -2.4687 16 1 5.2503 -4.3301 -1.5328 17 6 4.4668 -4.8200 -3.4570 18 7 4.0041 -4.3542 -4.5966 19 14 4.5765 -6.6637 -3.1772 20 1 3.3087 -7.1494 -2.5754 21 1 5.7053 -6.9587 -2.2586 22 1 4.8026 -7.3488 -4.4752 23 6 5.2213 -1.6982 -1.4258 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2128 2.3204 0.0097 28 1 1.3340 4.5114 -0.0024 29 1 3.7922 4.6380 -0.0117 30 1 5.1344 2.5752 -0.0105 31 1 3.7949 -0.7102 0.6644 32 1 5.2625 0.2458 0.3474 33 1 2.3528 -0.2530 -2.1391 34 1 2.5155 -1.5849 -0.9547 35 1 3.2155 -1.5411 -3.8925 36 1 2.6614 -2.9089 -2.8798 37 1 3.9468 -3.3969 -4.7417 38 1 5.0939 -2.3248 -0.5430 39 1 6.2580 -1.3738 -1.5163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:06 Heat of formation + Delta-G solvation = -31.204897 kcal Electronic energy + Delta-G solvation = -19923.320708 eV Core-core repulsion = 17023.031413 eV Total energy + Delta-G solvation = -2900.289295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36479 -39.58844 -38.29475 -35.70627 -33.46359 -31.14821 -30.73734 -29.97753 -28.20380 -26.72737 -25.64381 -23.09878 -22.74068 -21.70448 -21.28139 -19.08274 -18.73202 -17.34028 -17.16307 -16.58380 -16.38720 -15.91735 -15.68858 -15.39510 -15.16487 -14.96109 -14.34370 -14.14699 -13.69860 -13.56663 -13.16388 -13.07930 -12.79664 -12.54561 -12.46578 -12.25901 -12.07909 -11.94179 -11.90983 -11.75744 -11.71319 -11.31476 -10.58255 -10.43238 -9.84161 -9.44612 -9.03058 -8.59070 -6.31941 0.38838 0.53260 1.52665 1.61551 1.79280 2.42804 2.57473 2.77174 3.20886 3.33741 3.76814 3.86738 3.99768 4.05103 4.24707 4.26974 4.34254 4.36825 4.39597 4.50516 4.53309 4.57886 4.65491 4.70034 4.78253 4.86485 4.87447 5.07157 5.11960 5.15948 5.35047 5.39928 5.53507 5.60532 5.64107 5.76681 5.92352 6.12863 6.16783 6.23760 6.50531 6.66258 7.49275 8.79790 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032860 B = 0.004977 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.907763 B = 5624.638815 C = 6033.687983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.115 3.885 4 C -0.216 4.216 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.076 4.076 8 C -0.129 4.129 9 C 0.094 3.906 10 N -0.513 5.513 11 C 0.071 3.929 12 C -0.107 4.107 13 C 0.024 3.976 14 H -0.006 1.006 15 C -0.607 4.607 16 H 0.045 0.955 17 C -0.030 4.030 18 N -0.936 5.936 19 Si 1.116 2.884 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.283 1.283 23 C 0.058 3.942 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 15.120 11.834 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.094 4.094 8 C -0.130 4.130 9 C -0.033 4.033 10 N -0.236 5.236 11 C -0.056 4.056 12 C -0.146 4.146 13 C 0.004 3.996 14 H 0.012 0.988 15 C -0.645 4.645 16 H 0.063 0.937 17 C -0.228 4.228 18 N -0.573 5.573 19 Si 0.938 3.062 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.209 1.209 23 C -0.070 4.070 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.090 0.910 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.156 0.844 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.394 13.903 10.803 18.732 hybrid contribution -0.191 0.766 0.884 1.185 sum -6.584 14.670 11.687 19.878 Atomic orbital electron populations 1.23250 0.77266 1.04858 1.02211 1.86250 1.22887 1.27085 1.88461 1.19147 0.92066 0.85098 0.96716 1.21472 1.00871 0.92066 1.09030 1.21310 0.94984 0.97490 0.96418 1.21362 0.94227 0.98785 1.03538 1.21112 1.00791 0.90779 0.96732 1.19257 0.90849 0.95735 1.07136 1.20994 0.99451 0.93494 0.89386 1.65463 1.07507 1.27830 1.22842 1.22842 0.90848 0.95671 0.96282 1.22352 0.99006 0.96704 0.96524 1.19513 0.92218 0.94728 0.93095 0.98803 1.22370 1.46816 0.92072 1.03290 0.93687 1.27216 0.92758 1.10479 0.92353 1.70851 1.44503 1.16311 1.25627 0.82942 0.77429 0.69777 0.76020 1.20056 1.19678 1.20854 1.22948 0.96584 0.89942 0.97481 0.91996 0.87765 0.91028 0.83718 0.83013 0.83351 0.84363 0.95044 0.89209 0.91657 0.93799 0.94991 0.94267 0.92835 0.95077 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.87 6.24 -92.49 -0.58 -10.45 16 3 C 0.12 3.29 5.79 22.51 0.13 3.42 16 4 C -0.22 -4.82 9.04 22.36 0.20 -4.62 16 5 C -0.08 -1.60 10.04 22.25 0.22 -1.38 16 6 C -0.16 -3.22 10.04 22.28 0.22 -2.99 16 7 C -0.08 -1.86 9.66 22.25 0.22 -1.65 16 8 C -0.13 -3.85 5.29 -19.77 -0.10 -3.96 16 9 C 0.09 3.18 4.84 85.56 0.41 3.60 16 10 N -0.51 -20.79 5.36 -886.03 -4.75 -25.54 16 11 C 0.07 3.04 4.53 86.45 0.39 3.43 16 12 C -0.11 -5.42 5.03 31.49 0.16 -5.26 16 13 C 0.02 1.26 2.65 -10.65 -0.03 1.24 16 14 H -0.01 -0.36 8.04 -2.39 -0.02 -0.38 16 15 C -0.61 -35.25 8.37 25.60 0.21 -35.03 16 16 H 0.04 2.58 7.58 -2.91 -0.02 2.56 16 17 C -0.03 -1.73 5.09 84.65 0.43 -1.30 16 18 N -0.94 -58.17 13.27 21.45 0.28 -57.89 16 19 Si 1.12 51.18 29.90 68.60 2.05 53.23 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.06 2.62 6.01 86.45 0.52 3.14 16 24 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.13 7.65 -2.38 -0.02 1.11 16 27 H 0.15 2.51 6.30 -2.91 -0.02 2.49 16 28 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.14 2.96 8.04 -2.91 -0.02 2.93 16 31 H 0.03 1.13 7.60 -2.39 -0.02 1.11 16 32 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 33 H 0.07 2.67 7.01 -2.39 -0.02 2.65 16 34 H 0.04 1.90 6.40 -2.39 -0.02 1.88 16 35 H 0.03 1.62 7.92 -2.39 -0.02 1.60 16 36 H 0.04 2.16 7.23 -2.39 -0.02 2.14 16 37 H 0.26 16.45 6.00 -92.71 -0.56 15.90 16 38 H 0.03 1.42 7.56 -2.39 -0.02 1.40 16 39 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -69.05 307.70 2.35 -66.70 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.24 Total: 13.83 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.10 Total: -39.88 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -4.47 Total: -83.43 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.58 Total: -10.45 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -69.05 2.35 -66.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.494 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds