Wall clock time and date at job start Mon Mar 30 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47893 * 110.99994 * 2 1 4 4 C 1.53993 * 107.05743 * 214.15467 * 3 2 1 5 5 C 1.54598 * 105.14129 * 1.22607 * 4 3 2 6 6 C 1.50698 * 110.73020 * 140.31510 * 5 4 3 7 7 H 1.07999 * 120.00136 * 241.57720 * 6 5 4 8 8 C 1.37872 * 119.99757 * 61.57149 * 6 5 4 9 9 N 1.31519 * 120.00251 * 5.76132 * 8 6 5 10 10 Si 1.86799 * 119.99800 * 185.76431 * 8 6 5 11 11 H 1.48503 * 109.47262 * 90.00045 * 10 8 6 12 12 H 1.48504 * 109.47177 * 209.99768 * 10 8 6 13 13 H 1.48499 * 109.47205 * 329.99883 * 10 8 6 14 14 O 1.42904 * 110.71961 * 263.60285 * 5 4 3 15 15 C 1.42905 * 113.99728 * 179.53315 * 14 5 4 16 16 C 1.50699 * 109.46910 * 176.35731 * 15 14 5 17 17 C 1.38235 * 119.99521 * 269.72242 * 16 15 14 18 18 C 1.38240 * 119.99855 * 179.76743 * 17 16 15 19 19 C 1.38241 * 119.99470 * 0.48677 * 18 17 16 20 20 C 1.38233 * 120.00085 * 359.79330 * 19 18 17 21 21 C 1.38227 * 120.00372 * 90.00096 * 16 15 14 22 22 C 1.48537 * 110.99857 * 242.59980 * 2 1 3 23 23 H 1.08999 * 109.47174 * 59.87542 * 1 2 3 24 24 H 1.09003 * 109.47599 * 179.87514 * 1 2 3 25 25 H 1.09003 * 109.46954 * 299.87829 * 1 2 3 26 26 H 1.08994 * 109.92113 * 94.80005 * 3 2 1 27 27 H 1.09002 * 109.91839 * 333.50387 * 3 2 1 28 28 H 1.09003 * 110.31390 * 120.13742 * 4 3 2 29 29 H 1.09001 * 110.31198 * 242.30680 * 4 3 2 30 30 H 0.97004 * 119.99633 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.46863 * 296.35644 * 15 14 5 32 32 H 1.09004 * 109.47357 * 56.35411 * 15 14 5 33 33 H 1.08003 * 120.00572 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.00354 * 180.25127 * 18 17 16 35 35 H 1.08000 * 119.99732 * 179.76237 * 19 18 17 36 36 H 1.08004 * 119.99472 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.99877 * 359.97438 * 21 16 15 38 38 H 1.09000 * 110.66598 * 41.28647 * 22 2 1 39 39 H 1.09000 * 110.66447 * 278.15482 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2983 1.3658 -0.8265 5 6 3.4492 -0.0931 -1.3154 6 6 3.9512 -0.1304 -2.7358 7 1 3.3461 -0.5771 -3.5109 8 6 5.1830 0.4057 -3.0458 9 7 5.9683 0.8470 -2.0875 10 14 5.7366 0.5054 -4.8271 11 1 5.3033 1.8014 -5.4084 12 1 7.2168 0.4042 -4.8919 13 1 5.1300 -0.6100 -5.5972 14 8 4.3175 -0.8286 -0.4511 15 6 4.4985 -2.1936 -0.8336 16 6 5.4960 -2.8457 0.0887 17 6 6.8423 -2.8263 -0.2244 18 6 7.7578 -3.4203 0.6241 19 6 7.3260 -4.0424 1.7806 20 6 5.9791 -4.0668 2.0907 21 6 5.0642 -3.4682 1.2449 22 6 2.0013 -0.6382 -1.2312 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3634 -1.0277 -0.0022 25 1 -0.3633 0.5120 0.8911 26 1 2.2122 1.6967 1.0211 27 1 1.2759 2.0561 -0.4572 28 1 3.2137 2.0427 -1.6767 29 1 4.1470 1.6454 -0.2024 30 1 6.8351 1.2238 -2.3057 31 1 3.5456 -2.7187 -0.7680 32 1 4.8679 -2.2379 -1.8582 33 1 7.1792 -2.3442 -1.1302 34 1 8.8101 -3.4017 0.3816 35 1 8.0408 -4.5099 2.4416 36 1 5.6417 -4.5533 2.9940 37 1 4.0119 -3.4869 1.4874 38 1 1.4237 -0.3324 -2.1035 39 1 2.0041 -1.7236 -1.1314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260608014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:12 Heat of formation + Delta-G solvation = -9.629192 kcal Electronic energy + Delta-G solvation = -20142.703726 eV Core-core repulsion = 17243.350024 eV Total energy + Delta-G solvation = -2899.353703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.82292 -38.20955 -35.38517 -32.70106 -31.20257 -30.37669 -30.01468 -27.89048 -25.65609 -25.12958 -23.52314 -22.01951 -20.80411 -19.91160 -19.39143 -16.80639 -16.27029 -15.40777 -14.92833 -14.64142 -14.59740 -14.29826 -14.06886 -13.36405 -13.13262 -12.92067 -12.79446 -12.32232 -12.13631 -12.00553 -11.69389 -11.25523 -11.04903 -10.92427 -10.83712 -10.68112 -10.47652 -10.42941 -10.19405 -9.91249 -9.69797 -8.85304 -8.59429 -8.40994 -8.18132 -7.79263 -7.71220 -6.04568 -4.21521 1.85672 1.92066 3.23500 3.31855 3.33863 4.26320 4.33607 4.80836 5.14676 5.32242 5.37029 5.40940 5.55707 5.60870 5.72430 5.85846 5.90160 6.00973 6.05458 6.06739 6.17234 6.23514 6.30036 6.47801 6.49854 6.56267 6.58465 6.76747 6.87091 6.94563 6.99997 7.02928 7.34154 7.37870 7.53395 7.55301 7.64533 7.74722 7.81081 8.13579 8.77876 9.07769 9.50911 10.97429 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.008873 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.905480 B = 3154.867966 C = 4742.172578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.520 5.520 3 C 0.034 3.966 4 C -0.091 4.091 5 C 0.248 3.752 6 C -0.558 4.558 7 H 0.057 0.943 8 C 0.085 3.915 9 N -0.847 5.847 10 Si 0.881 3.119 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 O -0.351 6.351 15 C 0.116 3.884 16 C -0.063 4.063 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.106 4.106 22 C 0.010 3.990 23 H 0.020 0.980 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.260 0.740 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.040 0.960 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -5.297 4.455 7.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.244 5.244 3 C -0.093 4.093 4 C -0.129 4.129 5 C 0.209 3.791 6 C -0.596 4.596 7 H 0.075 0.925 8 C -0.122 4.122 9 N -0.482 5.482 10 Si 0.709 3.291 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.198 1.198 14 O -0.270 6.270 15 C 0.039 3.961 16 C -0.063 4.063 17 C -0.110 4.110 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.117 4.117 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.059 0.941 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.873 -5.397 5.148 7.690 hybrid contribution -0.122 0.497 -1.905 1.973 sum -1.995 -4.900 3.243 6.205 Atomic orbital electron populations 1.22468 0.89905 1.01021 0.99687 1.64701 1.06105 1.15453 1.38098 1.22956 0.97305 0.89001 1.00084 1.22171 0.94615 0.97857 0.98283 1.19705 0.82952 0.87567 0.88880 1.21309 1.03661 1.41588 0.93074 0.92463 1.24962 0.96269 0.94439 0.96549 1.70112 1.09115 1.37927 1.31004 0.86781 0.77900 0.78629 0.85810 1.20544 1.21124 1.19849 1.87941 1.67954 1.18893 1.52188 1.20834 0.93811 0.85145 0.96346 1.20022 0.94669 0.96137 0.95477 1.21173 0.92694 0.97259 0.99830 1.21087 0.99168 0.99248 0.95237 1.21003 0.95663 1.00893 0.97433 1.21015 0.93442 1.00998 0.99491 1.21076 0.99552 0.97799 0.94027 1.23926 0.99525 0.98952 0.89343 0.96193 0.92197 0.92322 0.91745 0.95314 0.91633 0.90743 0.92978 0.95313 0.92093 0.85806 0.86721 0.86945 0.86794 0.86387 0.94143 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.40 60.07 0.56 0.86 16 2 N -0.52 -10.34 5.55 -238.72 -1.33 -11.66 16 3 C 0.03 0.68 6.70 -2.76 -0.02 0.67 16 4 C -0.09 -2.12 5.42 -25.37 -0.14 -2.26 16 5 C 0.25 6.00 0.50 -89.91 -0.04 5.96 16 6 C -0.56 -14.43 6.56 -34.44 -0.23 -14.66 16 7 H 0.06 1.48 7.79 -52.49 -0.41 1.07 16 8 C 0.08 2.22 5.26 -17.82 -0.09 2.12 16 9 N -0.85 -23.00 12.25 55.43 0.68 -22.32 16 10 Si 0.88 20.23 29.54 -169.99 -5.02 15.21 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 O -0.35 -8.81 9.47 -35.23 -0.33 -9.15 16 15 C 0.12 2.56 5.54 36.01 0.20 2.76 16 16 C -0.06 -1.26 5.51 -104.63 -0.58 -1.84 16 17 C -0.09 -1.76 9.70 -39.58 -0.38 -2.14 16 18 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 19 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 20 C -0.13 -2.02 10.05 -39.59 -0.40 -2.42 16 21 C -0.11 -1.88 9.70 -39.59 -0.38 -2.26 16 22 C 0.01 0.22 5.53 -1.90 -0.01 0.21 16 23 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 28 H 0.06 1.56 7.84 -51.93 -0.41 1.16 16 29 H 0.07 1.88 8.07 -51.93 -0.42 1.46 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.03 0.60 6.46 -51.93 -0.34 0.27 16 32 H 0.06 1.45 6.97 -51.93 -0.36 1.08 16 33 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.04 0.86 7.87 -51.93 -0.41 0.45 16 39 H 0.07 1.41 6.32 -51.93 -0.33 1.08 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -28.09 318.15 -9.52 -37.61 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.00 Total: 3.39 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.30 Total: -17.87 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.65 Total: -33.98 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.33 Total: -9.15 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.09 -9.52 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260608014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.979 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds