Wall clock time and date at job start Mon Mar 30 2020 06:37:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.47893 * 110.99994 * 2 1
4 4 C 1.53993 * 107.05743 * 214.15467 * 3 2 1
5 5 C 1.54598 * 105.14129 * 1.22607 * 4 3 2
6 6 C 1.50698 * 110.73020 * 140.31510 * 5 4 3
7 7 H 1.07999 * 120.00136 * 241.57720 * 6 5 4
8 8 C 1.37872 * 119.99757 * 61.57149 * 6 5 4
9 9 N 1.31519 * 120.00251 * 5.76132 * 8 6 5
10 10 Si 1.86799 * 119.99800 * 185.76431 * 8 6 5
11 11 H 1.48503 * 109.47262 * 90.00045 * 10 8 6
12 12 H 1.48504 * 109.47177 * 209.99768 * 10 8 6
13 13 H 1.48499 * 109.47205 * 329.99883 * 10 8 6
14 14 O 1.42904 * 110.71961 * 263.60285 * 5 4 3
15 15 C 1.42905 * 113.99728 * 179.53315 * 14 5 4
16 16 C 1.50699 * 109.46910 * 176.35731 * 15 14 5
17 17 C 1.38235 * 119.99521 * 269.72242 * 16 15 14
18 18 C 1.38240 * 119.99855 * 179.76743 * 17 16 15
19 19 C 1.38241 * 119.99470 * 0.48677 * 18 17 16
20 20 C 1.38233 * 120.00085 * 359.79330 * 19 18 17
21 21 C 1.38227 * 120.00372 * 90.00096 * 16 15 14
22 22 C 1.48537 * 110.99857 * 242.59980 * 2 1 3
23 23 H 1.08999 * 109.47174 * 59.87542 * 1 2 3
24 24 H 1.09003 * 109.47599 * 179.87514 * 1 2 3
25 25 H 1.09003 * 109.46954 * 299.87829 * 1 2 3
26 26 H 1.08994 * 109.92113 * 94.80005 * 3 2 1
27 27 H 1.09002 * 109.91839 * 333.50387 * 3 2 1
28 28 H 1.09003 * 110.31390 * 120.13742 * 4 3 2
29 29 H 1.09001 * 110.31198 * 242.30680 * 4 3 2
30 30 H 0.97004 * 119.99633 * 179.97438 * 9 8 6
31 31 H 1.08997 * 109.46863 * 296.35644 * 15 14 5
32 32 H 1.09004 * 109.47357 * 56.35411 * 15 14 5
33 33 H 1.08003 * 120.00572 * 359.97438 * 17 16 15
34 34 H 1.07999 * 120.00354 * 180.25127 * 18 17 16
35 35 H 1.08000 * 119.99732 * 179.76237 * 19 18 17
36 36 H 1.08004 * 119.99472 * 179.97438 * 20 19 18
37 37 H 1.08000 * 119.99877 * 359.97438 * 21 16 15
38 38 H 1.09000 * 110.66598 * 41.28647 * 22 2 1
39 39 H 1.09000 * 110.66447 * 278.15482 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9990 1.3807 0.0000
4 6 3.2983 1.3658 -0.8265
5 6 3.4492 -0.0931 -1.3154
6 6 3.9512 -0.1304 -2.7358
7 1 3.3461 -0.5771 -3.5109
8 6 5.1830 0.4057 -3.0458
9 7 5.9683 0.8470 -2.0875
10 14 5.7366 0.5054 -4.8271
11 1 5.3033 1.8014 -5.4084
12 1 7.2168 0.4042 -4.8919
13 1 5.1300 -0.6100 -5.5972
14 8 4.3175 -0.8286 -0.4511
15 6 4.4985 -2.1936 -0.8336
16 6 5.4960 -2.8457 0.0887
17 6 6.8423 -2.8263 -0.2244
18 6 7.7578 -3.4203 0.6241
19 6 7.3260 -4.0424 1.7806
20 6 5.9791 -4.0668 2.0907
21 6 5.0642 -3.4682 1.2449
22 6 2.0013 -0.6382 -1.2312
23 1 -0.3633 0.5158 -0.8888
24 1 -0.3634 -1.0277 -0.0022
25 1 -0.3633 0.5120 0.8911
26 1 2.2122 1.6967 1.0211
27 1 1.2759 2.0561 -0.4572
28 1 3.2137 2.0427 -1.6767
29 1 4.1470 1.6454 -0.2024
30 1 6.8351 1.2238 -2.3057
31 1 3.5456 -2.7187 -0.7680
32 1 4.8679 -2.2379 -1.8582
33 1 7.1792 -2.3442 -1.1302
34 1 8.8101 -3.4017 0.3816
35 1 8.0408 -4.5099 2.4416
36 1 5.6417 -4.5533 2.9940
37 1 4.0119 -3.4869 1.4874
38 1 1.4237 -0.3324 -2.1035
39 1 2.0041 -1.7236 -1.1314
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260608014.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:37:11
Heat of formation + Delta-G solvation = -26.396494 kcal
Electronic energy + Delta-G solvation = -20143.430811 eV
Core-core repulsion = 17243.350024 eV
Total energy + Delta-G solvation = -2900.080787 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.38070 -39.72962 -37.08572 -34.62256 -32.78063 -31.69362 -31.62030 -29.66733
-27.35350 -26.76779 -25.20219 -23.34382 -22.26624 -21.51515 -21.23585 -18.73561
-17.60978 -17.09245 -16.78510 -16.21386 -16.06046 -15.89735 -15.70488 -14.93926
-14.76117 -14.36257 -14.19333 -13.85212 -13.75480 -13.56595 -13.17266 -13.10296
-12.76513 -12.68707 -12.52222 -12.31887 -12.16237 -11.88283 -11.82535 -11.58140
-11.48898 -10.75400 -10.58461 -9.73981 -9.66666 -9.58453 -9.25848 -8.05990
-6.28378 0.50944 0.59202 1.37572 1.40503 1.48104 2.39512 2.88651
3.16298 3.29233 3.66912 4.05713 4.08328 4.12721 4.22971 4.30146
4.36628 4.40270 4.51544 4.59559 4.67109 4.71820 4.78406 4.82567
4.91118 4.97997 5.00903 5.03512 5.18775 5.21622 5.27940 5.47947
5.64573 5.65962 5.66887 5.81625 5.91321 5.93159 6.17775 6.21958
6.28239 6.76577 7.19512 7.48742 8.95113
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.013603 B = 0.008873 C = 0.005903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2057.905480 B = 3154.867966 C = 4742.172578
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.531 5.531
3 C 0.043 3.957
4 C -0.088 4.088
5 C 0.234 3.766
6 C -0.568 4.568
7 H 0.050 0.950
8 C 0.045 3.955
9 N -0.874 5.874
10 Si 0.937 3.063
11 H -0.275 1.275
12 H -0.285 1.285
13 H -0.271 1.271
14 O -0.372 6.372
15 C 0.124 3.876
16 C -0.094 4.094
17 C -0.118 4.118
18 C -0.130 4.130
19 C -0.122 4.122
20 C -0.124 4.124
21 C -0.116 4.116
22 C 0.021 3.979
23 H 0.026 0.974
24 H 0.072 0.928
25 H 0.079 0.921
26 H 0.074 0.926
27 H 0.049 0.951
28 H 0.050 0.950
29 H 0.045 0.955
30 H 0.258 0.742
31 H 0.036 0.964
32 H 0.031 0.969
33 H 0.098 0.902
34 H 0.139 0.861
35 H 0.154 0.846
36 H 0.152 0.848
37 H 0.125 0.875
38 H 0.039 0.961
39 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.730 -6.446 5.949 9.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 N -0.255 5.255
3 C -0.085 4.085
4 C -0.126 4.126
5 C 0.195 3.805
6 C -0.606 4.606
7 H 0.068 0.932
8 C -0.159 4.159
9 N -0.510 5.510
10 Si 0.763 3.237
11 H -0.200 1.200
12 H -0.211 1.211
13 H -0.196 1.196
14 O -0.292 6.292
15 C 0.047 3.953
16 C -0.094 4.094
17 C -0.136 4.136
18 C -0.148 4.148
19 C -0.140 4.140
20 C -0.142 4.142
21 C -0.134 4.134
22 C -0.107 4.107
23 H 0.044 0.956
24 H 0.091 0.909
25 H 0.098 0.902
26 H 0.092 0.908
27 H 0.067 0.933
28 H 0.069 0.931
29 H 0.064 0.936
30 H 0.067 0.933
31 H 0.054 0.946
32 H 0.050 0.950
33 H 0.116 0.884
34 H 0.156 0.844
35 H 0.172 0.828
36 H 0.169 0.831
37 H 0.143 0.857
38 H 0.057 0.943
39 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -2.336 -6.549 6.636 9.612
hybrid contribution 0.029 0.798 -2.315 2.449
sum -2.307 -5.751 4.321 7.554
Atomic orbital electron populations
1.22567 0.87100 1.02401 1.00994 1.64673 1.08783 1.15100 1.36945
1.22859 0.95816 0.89736 1.00050 1.22042 0.95635 0.97217 0.97723
1.19833 0.84446 0.88211 0.88019 1.21551 1.03785 1.41206 0.94084
0.93166 1.25565 0.96372 0.94223 0.99786 1.70232 1.09253 1.38887
1.32603 0.85898 0.77324 0.78645 0.81806 1.20015 1.21086 1.19551
1.87892 1.68440 1.20373 1.52451 1.20767 0.94759 0.84215 0.95565
1.19980 0.94544 0.98071 0.96796 1.21121 0.93307 0.99021 1.00143
1.21376 0.99819 0.98399 0.95167 1.21487 0.96382 0.99249 0.96834
1.21449 0.93255 0.99575 0.99872 1.21220 1.00623 0.97970 0.93583
1.23698 0.97794 0.98959 0.90215 0.95587 0.90889 0.90179 0.90767
0.93278 0.93109 0.93616 0.93259 0.94573 0.95045 0.88415 0.84356
0.82831 0.83057 0.85728 0.94274 0.91480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.52 9.40 127.69 1.20 1.72 16
2 N -0.53 -20.42 5.55 -909.16 -5.05 -25.47 16
3 C 0.04 1.68 6.70 86.45 0.58 2.26 16
4 C -0.09 -4.20 5.42 31.47 0.17 -4.03 16
5 C 0.23 11.66 0.50 -10.33 -0.01 11.65 16
6 C -0.57 -30.43 6.56 25.60 0.17 -30.26 16
7 H 0.05 2.68 7.79 -2.91 -0.02 2.66 16
8 C 0.05 2.43 5.26 84.65 0.45 2.87 16
9 N -0.87 -49.50 12.25 21.45 0.26 -49.24 16
10 Si 0.94 42.71 29.54 68.60 2.03 44.74 16
11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
12 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16
13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
14 O -0.37 -19.44 9.47 -148.98 -1.41 -20.85 16
15 C 0.12 5.74 5.54 71.24 0.39 6.13 16
16 C -0.09 -3.86 5.51 -19.87 -0.11 -3.97 16
17 C -0.12 -4.66 9.70 22.27 0.22 -4.44 16
18 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16
19 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16
20 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16
21 C -0.12 -3.97 9.70 22.26 0.22 -3.76 16
22 C 0.02 0.92 5.53 86.65 0.48 1.40 16
23 H 0.03 0.73 8.00 -2.39 -0.02 0.71 16
24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
26 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16
27 H 0.05 1.70 7.73 -2.39 -0.02 1.68 16
28 H 0.05 2.50 7.84 -2.39 -0.02 2.48 16
29 H 0.04 2.40 8.07 -2.39 -0.02 2.38 16
30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16
31 H 0.04 1.57 6.46 -2.39 -0.02 1.55 16
32 H 0.03 1.60 6.97 -2.38 -0.02 1.58 16
33 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16
34 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16
35 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16
36 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16
37 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16
38 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16
39 H 0.07 2.83 6.32 -2.39 -0.02 2.82 16
Total: -1.00 -62.61 318.15 1.27 -61.35
By element:
Atomic # 1 Polarization: 18.85 SS G_CDS: 1.01 Total: 19.86 kcal
Atomic # 6 Polarization: -34.82 SS G_CDS: 4.42 Total: -30.39 kcal
Atomic # 7 Polarization: -69.92 SS G_CDS: -4.79 Total: -74.70 kcal
Atomic # 8 Polarization: -19.44 SS G_CDS: -1.41 Total: -20.85 kcal
Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal
Total: -62.61 1.27 -61.35 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260608014.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.951 kcal
(2) G-P(sol) polarization free energy of solvation -62.613 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds