Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47893 * 110.99994 * 2 1 4 4 C 1.53993 * 107.05743 * 214.15467 * 3 2 1 5 5 C 1.54598 * 105.14129 * 1.22607 * 4 3 2 6 6 C 1.50698 * 110.73020 * 140.31510 * 5 4 3 7 7 H 1.07999 * 120.00136 * 241.57720 * 6 5 4 8 8 C 1.37872 * 119.99757 * 61.57149 * 6 5 4 9 9 N 1.31519 * 120.00251 * 5.76132 * 8 6 5 10 10 Si 1.86799 * 119.99800 * 185.76431 * 8 6 5 11 11 H 1.48503 * 109.47262 * 90.00045 * 10 8 6 12 12 H 1.48504 * 109.47177 * 209.99768 * 10 8 6 13 13 H 1.48499 * 109.47205 * 329.99883 * 10 8 6 14 14 O 1.42904 * 110.71961 * 263.60285 * 5 4 3 15 15 C 1.42905 * 113.99728 * 179.53315 * 14 5 4 16 16 C 1.50699 * 109.46910 * 176.35731 * 15 14 5 17 17 C 1.38235 * 119.99521 * 269.72242 * 16 15 14 18 18 C 1.38240 * 119.99855 * 179.76743 * 17 16 15 19 19 C 1.38241 * 119.99470 * 0.48677 * 18 17 16 20 20 C 1.38233 * 120.00085 * 359.79330 * 19 18 17 21 21 C 1.38227 * 120.00372 * 90.00096 * 16 15 14 22 22 C 1.48537 * 110.99857 * 242.59980 * 2 1 3 23 23 H 1.08999 * 109.47174 * 59.87542 * 1 2 3 24 24 H 1.09003 * 109.47599 * 179.87514 * 1 2 3 25 25 H 1.09003 * 109.46954 * 299.87829 * 1 2 3 26 26 H 1.08994 * 109.92113 * 94.80005 * 3 2 1 27 27 H 1.09002 * 109.91839 * 333.50387 * 3 2 1 28 28 H 1.09003 * 110.31390 * 120.13742 * 4 3 2 29 29 H 1.09001 * 110.31198 * 242.30680 * 4 3 2 30 30 H 0.97004 * 119.99633 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.46863 * 296.35644 * 15 14 5 32 32 H 1.09004 * 109.47357 * 56.35411 * 15 14 5 33 33 H 1.08003 * 120.00572 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.00354 * 180.25127 * 18 17 16 35 35 H 1.08000 * 119.99732 * 179.76237 * 19 18 17 36 36 H 1.08004 * 119.99472 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.99877 * 359.97438 * 21 16 15 38 38 H 1.09000 * 110.66598 * 41.28647 * 22 2 1 39 39 H 1.09000 * 110.66447 * 278.15482 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2983 1.3658 -0.8265 5 6 3.4492 -0.0931 -1.3154 6 6 3.9512 -0.1304 -2.7358 7 1 3.3461 -0.5771 -3.5109 8 6 5.1830 0.4057 -3.0458 9 7 5.9683 0.8470 -2.0875 10 14 5.7366 0.5054 -4.8271 11 1 5.3033 1.8014 -5.4084 12 1 7.2168 0.4042 -4.8919 13 1 5.1300 -0.6100 -5.5972 14 8 4.3175 -0.8286 -0.4511 15 6 4.4985 -2.1936 -0.8336 16 6 5.4960 -2.8457 0.0887 17 6 6.8423 -2.8263 -0.2244 18 6 7.7578 -3.4203 0.6241 19 6 7.3260 -4.0424 1.7806 20 6 5.9791 -4.0668 2.0907 21 6 5.0642 -3.4682 1.2449 22 6 2.0013 -0.6382 -1.2312 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3634 -1.0277 -0.0022 25 1 -0.3633 0.5120 0.8911 26 1 2.2122 1.6967 1.0211 27 1 1.2759 2.0561 -0.4572 28 1 3.2137 2.0427 -1.6767 29 1 4.1470 1.6454 -0.2024 30 1 6.8351 1.2238 -2.3057 31 1 3.5456 -2.7187 -0.7680 32 1 4.8679 -2.2379 -1.8582 33 1 7.1792 -2.3442 -1.1302 34 1 8.8101 -3.4017 0.3816 35 1 8.0408 -4.5099 2.4416 36 1 5.6417 -4.5533 2.9940 37 1 4.0119 -3.4869 1.4874 38 1 1.4237 -0.3324 -2.1035 39 1 2.0041 -1.7236 -1.1314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260608014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -26.396494 kcal Electronic energy + Delta-G solvation = -20143.430811 eV Core-core repulsion = 17243.350024 eV Total energy + Delta-G solvation = -2900.080787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38070 -39.72962 -37.08572 -34.62256 -32.78063 -31.69362 -31.62030 -29.66733 -27.35350 -26.76779 -25.20219 -23.34382 -22.26624 -21.51515 -21.23585 -18.73561 -17.60978 -17.09245 -16.78510 -16.21386 -16.06046 -15.89735 -15.70488 -14.93926 -14.76117 -14.36257 -14.19333 -13.85212 -13.75480 -13.56595 -13.17266 -13.10296 -12.76513 -12.68707 -12.52222 -12.31887 -12.16237 -11.88283 -11.82535 -11.58140 -11.48898 -10.75400 -10.58461 -9.73981 -9.66666 -9.58453 -9.25848 -8.05990 -6.28378 0.50944 0.59202 1.37572 1.40503 1.48104 2.39512 2.88651 3.16298 3.29233 3.66912 4.05713 4.08328 4.12721 4.22971 4.30146 4.36628 4.40270 4.51544 4.59559 4.67109 4.71820 4.78406 4.82567 4.91118 4.97997 5.00903 5.03512 5.18775 5.21622 5.27940 5.47947 5.64573 5.65962 5.66887 5.81625 5.91321 5.93159 6.17775 6.21958 6.28239 6.76577 7.19512 7.48742 8.95113 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.008873 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.905480 B = 3154.867966 C = 4742.172578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.043 3.957 4 C -0.088 4.088 5 C 0.234 3.766 6 C -0.568 4.568 7 H 0.050 0.950 8 C 0.045 3.955 9 N -0.874 5.874 10 Si 0.937 3.063 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.271 1.271 14 O -0.372 6.372 15 C 0.124 3.876 16 C -0.094 4.094 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.021 3.979 23 H 0.026 0.974 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.258 0.742 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.039 0.961 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -6.446 5.949 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.255 5.255 3 C -0.085 4.085 4 C -0.126 4.126 5 C 0.195 3.805 6 C -0.606 4.606 7 H 0.068 0.932 8 C -0.159 4.159 9 N -0.510 5.510 10 Si 0.763 3.237 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.196 1.196 14 O -0.292 6.292 15 C 0.047 3.953 16 C -0.094 4.094 17 C -0.136 4.136 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.134 4.134 22 C -0.107 4.107 23 H 0.044 0.956 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.057 0.943 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.336 -6.549 6.636 9.612 hybrid contribution 0.029 0.798 -2.315 2.449 sum -2.307 -5.751 4.321 7.554 Atomic orbital electron populations 1.22567 0.87100 1.02401 1.00994 1.64673 1.08783 1.15100 1.36945 1.22859 0.95816 0.89736 1.00050 1.22042 0.95635 0.97217 0.97723 1.19833 0.84446 0.88211 0.88019 1.21551 1.03785 1.41206 0.94084 0.93166 1.25565 0.96372 0.94223 0.99786 1.70232 1.09253 1.38887 1.32603 0.85898 0.77324 0.78645 0.81806 1.20015 1.21086 1.19551 1.87892 1.68440 1.20373 1.52451 1.20767 0.94759 0.84215 0.95565 1.19980 0.94544 0.98071 0.96796 1.21121 0.93307 0.99021 1.00143 1.21376 0.99819 0.98399 0.95167 1.21487 0.96382 0.99249 0.96834 1.21449 0.93255 0.99575 0.99872 1.21220 1.00623 0.97970 0.93583 1.23698 0.97794 0.98959 0.90215 0.95587 0.90889 0.90179 0.90767 0.93278 0.93109 0.93616 0.93259 0.94573 0.95045 0.88415 0.84356 0.82831 0.83057 0.85728 0.94274 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.40 127.69 1.20 1.72 16 2 N -0.53 -20.42 5.55 -909.16 -5.05 -25.47 16 3 C 0.04 1.68 6.70 86.45 0.58 2.26 16 4 C -0.09 -4.20 5.42 31.47 0.17 -4.03 16 5 C 0.23 11.66 0.50 -10.33 -0.01 11.65 16 6 C -0.57 -30.43 6.56 25.60 0.17 -30.26 16 7 H 0.05 2.68 7.79 -2.91 -0.02 2.66 16 8 C 0.05 2.43 5.26 84.65 0.45 2.87 16 9 N -0.87 -49.50 12.25 21.45 0.26 -49.24 16 10 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 O -0.37 -19.44 9.47 -148.98 -1.41 -20.85 16 15 C 0.12 5.74 5.54 71.24 0.39 6.13 16 16 C -0.09 -3.86 5.51 -19.87 -0.11 -3.97 16 17 C -0.12 -4.66 9.70 22.27 0.22 -4.44 16 18 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 19 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 20 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 21 C -0.12 -3.97 9.70 22.26 0.22 -3.76 16 22 C 0.02 0.92 5.53 86.65 0.48 1.40 16 23 H 0.03 0.73 8.00 -2.39 -0.02 0.71 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 27 H 0.05 1.70 7.73 -2.39 -0.02 1.68 16 28 H 0.05 2.50 7.84 -2.39 -0.02 2.48 16 29 H 0.04 2.40 8.07 -2.39 -0.02 2.38 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.04 1.57 6.46 -2.39 -0.02 1.55 16 32 H 0.03 1.60 6.97 -2.38 -0.02 1.58 16 33 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 34 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16 39 H 0.07 2.83 6.32 -2.39 -0.02 2.82 16 Total: -1.00 -62.61 318.15 1.27 -61.35 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.01 Total: 19.86 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.42 Total: -30.39 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -4.79 Total: -74.70 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.41 Total: -20.85 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -62.61 1.27 -61.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260608014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.951 kcal (2) G-P(sol) polarization free energy of solvation -62.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds