Wall clock time and date at job start Mon Mar 30 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99976 * 2 1 4 4 C 1.38750 * 120.05399 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94335 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05683 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10940 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.97073 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47436 * 89.99799 * 8 7 6 10 10 C 1.48528 * 110.99801 * 287.39626 * 9 8 7 11 11 C 1.54937 * 103.22430 * 200.27877 * 10 9 8 12 12 C 1.54592 * 102.92511 * 37.41391 * 11 10 9 13 13 H 1.09002 * 110.39425 * 96.99901 * 12 11 10 14 14 C 1.50695 * 110.31227 * 219.12886 * 12 11 10 15 15 H 1.07999 * 120.00538 * 115.71069 * 14 12 11 16 16 C 1.37881 * 119.99661 * 295.71417 * 14 12 11 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.47903 * 110.99941 * 170.00070 * 9 8 7 23 23 C 1.38169 * 120.05329 * 0.24752 * 7 6 5 24 24 H 1.09008 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47619 * 300.00228 * 1 2 3 26 26 H 1.09003 * 109.46724 * 60.00793 * 1 2 3 27 27 H 1.08006 * 120.02812 * 359.96123 * 4 3 2 28 28 H 1.08002 * 119.97427 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.94320 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47410 * 329.99168 * 8 7 6 31 31 H 1.09010 * 109.47051 * 209.99949 * 8 7 6 32 32 H 1.08999 * 110.67200 * 318.71089 * 10 9 8 33 33 H 1.08996 * 110.66815 * 81.84653 * 10 9 8 34 34 H 1.09003 * 110.72666 * 279.05141 * 11 10 9 35 35 H 1.09009 * 110.72428 * 155.77540 * 11 10 9 36 36 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 37 37 H 1.08996 * 109.91819 * 26.48841 * 22 9 8 38 38 H 1.09008 * 109.91522 * 265.19754 * 22 9 8 39 39 H 1.08002 * 120.02461 * 179.72822 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3019 3.6758 0.0005 7 6 4.0560 2.5171 0.0000 8 6 5.5607 2.5982 0.0000 9 7 6.0498 2.6240 1.3850 10 6 5.7655 3.9335 2.0255 11 6 6.7673 3.9753 3.2067 12 6 8.0292 3.3078 2.6135 13 1 8.7303 4.0651 2.2628 14 6 8.6864 2.4244 3.6425 15 1 8.7426 1.3579 3.4820 16 6 9.2160 2.9778 4.7890 17 7 9.1480 4.2767 4.9843 18 14 10.0300 1.8828 6.0648 19 1 11.4769 1.7543 5.7562 20 1 9.3975 0.5395 6.0402 21 1 9.8628 2.4841 7.4123 22 6 7.5193 2.4631 1.4312 23 6 3.4311 1.2848 -0.0062 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.2128 2.3203 -0.0016 28 1 1.3340 4.5114 0.0000 29 1 3.7922 4.6381 0.0005 30 1 5.8757 3.5066 -0.5135 31 1 5.9715 1.7292 -0.5143 32 1 5.9560 4.7513 1.3305 33 1 4.7390 3.9686 2.3903 34 1 6.3895 3.4021 4.0534 35 1 6.9765 5.0045 3.4989 36 1 8.7256 4.8453 4.3216 37 1 7.9615 2.8206 0.5014 38 1 7.7733 1.4145 1.5872 39 1 4.0207 0.3799 -0.0111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261247486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:08 Heat of formation + Delta-G solvation = -14.127962 kcal Electronic energy + Delta-G solvation = -19232.835453 eV Core-core repulsion = 16333.286669 eV Total energy + Delta-G solvation = -2899.548784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17683 -38.49594 -37.17746 -33.73938 -31.83611 -30.51836 -29.22225 -28.21670 -27.41042 -25.13894 -23.73542 -22.55609 -21.15582 -20.15627 -19.61312 -17.78476 -16.86360 -16.27107 -15.94899 -15.83586 -15.20978 -14.81048 -14.28362 -13.75537 -13.70805 -13.27750 -13.04942 -12.78468 -12.59660 -12.20870 -11.91347 -11.68786 -11.40438 -11.16073 -11.08702 -10.89871 -10.73115 -10.58136 -10.38046 -10.07088 -9.78134 -9.58103 -8.80326 -8.41541 -8.31706 -8.18361 -7.79235 -6.28493 -3.99368 1.34705 1.48813 3.18714 3.47196 3.51473 3.67034 3.76007 4.58022 4.68926 4.72885 4.85323 4.95229 4.97208 5.11643 5.24101 5.28347 5.37675 5.43420 5.52499 5.66156 5.77575 5.79493 5.96821 6.06011 6.13066 6.15429 6.30235 6.41125 6.45430 6.66811 6.72786 6.78710 6.89221 7.03275 7.27804 7.34598 7.37077 7.67316 7.80892 8.29110 8.49843 8.94359 9.71425 11.09840 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.004127 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.523429 B = 6783.023102 C = 7158.813424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.149 4.149 7 C -0.025 4.025 8 C 0.081 3.919 9 N -0.508 5.508 10 C 0.035 3.965 11 C -0.110 4.110 12 C 0.025 3.975 13 H 0.020 0.980 14 C -0.586 4.586 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 1.070 2.930 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.052 3.948 23 C -0.131 4.131 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.270 0.730 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.967 -3.107 -11.615 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.168 4.168 7 C -0.026 4.026 8 C -0.047 4.047 9 N -0.232 5.232 10 C -0.093 4.093 11 C -0.149 4.149 12 C 0.006 3.994 13 H 0.038 0.962 14 C -0.624 4.624 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.552 5.552 18 Si 0.898 3.102 19 H -0.216 1.216 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.075 4.075 23 C -0.150 4.150 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.359 -3.721 -9.880 18.638 hybrid contribution -0.749 0.832 -1.949 2.248 sum -16.109 -2.889 -11.829 20.193 Atomic orbital electron populations 1.23012 0.78752 1.03688 1.01176 1.86076 1.21084 1.27141 1.88921 1.18993 0.92300 0.83992 0.96939 1.21144 0.99648 0.92496 1.10057 1.20849 0.94480 0.96820 0.97957 1.20981 0.93695 0.98107 1.03986 1.19607 0.95473 0.92067 0.95426 1.21233 0.90398 1.01208 0.91885 1.64775 1.14034 1.31236 1.13175 1.23304 0.99965 0.89100 0.96893 1.22694 0.96001 0.99723 0.96452 1.19643 0.92713 0.94389 0.92653 0.96188 1.22024 1.40379 0.94410 1.05634 0.93080 1.25781 0.96025 0.98008 0.98814 1.70770 1.42435 1.04111 1.37881 0.83531 0.76023 0.74637 0.75959 1.21604 1.21470 1.21120 1.22982 0.85137 1.01749 0.97645 1.20280 0.90991 0.98436 1.05284 0.88434 0.92735 0.92890 0.85881 0.86039 0.86213 0.94022 0.90237 0.95197 0.91515 0.91373 0.92977 0.91806 0.96069 0.90723 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.05 10.50 -19.43 -0.20 -4.26 16 3 C 0.12 1.68 6.69 -39.22 -0.26 1.41 16 4 C -0.21 -2.56 9.04 -39.44 -0.36 -2.92 16 5 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 6 C -0.15 -2.01 8.83 -39.56 -0.35 -2.36 16 7 C -0.03 -0.37 5.16 -104.65 -0.54 -0.91 16 8 C 0.08 1.28 4.86 -4.98 -0.02 1.26 16 9 N -0.51 -9.92 5.23 -231.89 -1.21 -11.13 16 10 C 0.04 0.68 5.67 -1.90 -0.01 0.67 16 11 C -0.11 -2.58 5.57 -24.87 -0.14 -2.72 16 12 C 0.03 0.63 2.54 -90.42 -0.23 0.40 16 13 H 0.02 0.54 7.95 -51.93 -0.41 0.12 16 14 C -0.59 -16.53 8.38 -34.44 -0.29 -16.82 16 15 H 0.05 1.45 7.34 -52.49 -0.39 1.06 16 16 C 0.02 0.50 5.34 -17.82 -0.10 0.41 16 17 N -0.92 -27.51 13.45 55.43 0.75 -26.76 16 18 Si 1.07 25.50 29.90 -169.99 -5.08 20.41 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.05 1.12 6.31 -2.75 -0.02 1.10 16 23 C -0.13 -1.94 9.64 -39.43 -0.38 -2.32 16 24 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.12 1.14 6.30 -52.48 -0.33 0.81 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.04 0.63 7.77 -51.93 -0.40 0.22 16 31 H 0.08 1.18 8.02 -51.92 -0.42 0.76 16 32 H 0.03 0.54 7.81 -51.93 -0.41 0.14 16 33 H 0.07 1.25 7.85 -51.93 -0.41 0.84 16 34 H 0.07 1.75 7.86 -51.93 -0.41 1.35 16 35 H 0.05 1.23 7.10 -51.92 -0.37 0.86 16 36 H 0.27 8.01 5.65 -40.82 -0.23 7.78 16 37 H 0.02 0.42 7.77 -51.93 -0.40 0.01 16 38 H 0.07 1.67 7.39 -51.92 -0.38 1.29 16 39 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.21 314.73 -8.95 -40.16 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.84 Total: -0.20 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -2.10 Total: -22.96 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.47 Total: -37.90 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.26 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.21 -8.95 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.029 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds