Wall clock time and date at job start Mon Mar 30 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99976 * 2 1 4 4 C 1.38750 * 120.05399 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94335 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05683 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10940 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.97073 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47436 * 89.99799 * 8 7 6 10 10 C 1.48528 * 110.99801 * 287.39626 * 9 8 7 11 11 C 1.54937 * 103.22430 * 200.27877 * 10 9 8 12 12 C 1.54592 * 102.92511 * 37.41391 * 11 10 9 13 13 H 1.09002 * 110.39425 * 96.99901 * 12 11 10 14 14 C 1.50695 * 110.31227 * 219.12886 * 12 11 10 15 15 H 1.07999 * 120.00538 * 115.71069 * 14 12 11 16 16 C 1.37881 * 119.99661 * 295.71417 * 14 12 11 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.47903 * 110.99941 * 170.00070 * 9 8 7 23 23 C 1.38169 * 120.05329 * 0.24752 * 7 6 5 24 24 H 1.09008 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47619 * 300.00228 * 1 2 3 26 26 H 1.09003 * 109.46724 * 60.00793 * 1 2 3 27 27 H 1.08006 * 120.02812 * 359.96123 * 4 3 2 28 28 H 1.08002 * 119.97427 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.94320 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47410 * 329.99168 * 8 7 6 31 31 H 1.09010 * 109.47051 * 209.99949 * 8 7 6 32 32 H 1.08999 * 110.67200 * 318.71089 * 10 9 8 33 33 H 1.08996 * 110.66815 * 81.84653 * 10 9 8 34 34 H 1.09003 * 110.72666 * 279.05141 * 11 10 9 35 35 H 1.09009 * 110.72428 * 155.77540 * 11 10 9 36 36 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 37 37 H 1.08996 * 109.91819 * 26.48841 * 22 9 8 38 38 H 1.09008 * 109.91522 * 265.19754 * 22 9 8 39 39 H 1.08002 * 120.02461 * 179.72822 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3019 3.6758 0.0005 7 6 4.0560 2.5171 0.0000 8 6 5.5607 2.5982 0.0000 9 7 6.0498 2.6240 1.3850 10 6 5.7655 3.9335 2.0255 11 6 6.7673 3.9753 3.2067 12 6 8.0292 3.3078 2.6135 13 1 8.7303 4.0651 2.2628 14 6 8.6864 2.4244 3.6425 15 1 8.7426 1.3579 3.4820 16 6 9.2160 2.9778 4.7890 17 7 9.1480 4.2767 4.9843 18 14 10.0300 1.8828 6.0648 19 1 11.4769 1.7543 5.7562 20 1 9.3975 0.5395 6.0402 21 1 9.8628 2.4841 7.4123 22 6 7.5193 2.4631 1.4312 23 6 3.4311 1.2848 -0.0062 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.2128 2.3203 -0.0016 28 1 1.3340 4.5114 0.0000 29 1 3.7922 4.6381 0.0005 30 1 5.8757 3.5066 -0.5135 31 1 5.9715 1.7292 -0.5143 32 1 5.9560 4.7513 1.3305 33 1 4.7390 3.9686 2.3903 34 1 6.3895 3.4021 4.0534 35 1 6.9765 5.0045 3.4989 36 1 8.7256 4.8453 4.3216 37 1 7.9615 2.8206 0.5014 38 1 7.7733 1.4145 1.5872 39 1 4.0207 0.3799 -0.0111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261247486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:07 Heat of formation + Delta-G solvation = -33.353646 kcal Electronic energy + Delta-G solvation = -19233.669141 eV Core-core repulsion = 16333.286669 eV Total energy + Delta-G solvation = -2900.382472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15333 -39.95784 -38.32510 -35.56836 -33.32587 -31.57566 -30.64631 -30.01529 -28.16178 -26.63089 -25.65624 -23.56946 -22.35828 -21.58473 -21.52843 -18.97257 -18.74959 -17.20009 -16.94185 -16.84664 -16.63410 -16.37319 -15.67293 -15.36394 -14.87344 -14.68952 -14.37980 -14.24591 -13.82768 -13.62302 -13.16575 -13.10543 -12.78560 -12.65544 -12.54275 -12.34039 -12.07337 -11.96073 -11.90684 -11.76485 -11.64967 -11.47054 -10.53249 -10.46772 -9.84030 -9.35391 -9.12364 -8.56626 -6.28161 0.33848 0.49921 1.53709 1.62505 1.80219 2.37621 2.59035 2.70968 3.21045 3.28378 3.75392 3.88667 3.99051 4.05741 4.13122 4.30197 4.31274 4.33037 4.40103 4.40331 4.43591 4.53572 4.65100 4.72202 4.73456 4.80570 4.84609 5.01719 5.07278 5.16926 5.33362 5.36019 5.45362 5.47638 5.66006 5.81681 6.01320 6.12259 6.17867 6.25500 6.48156 6.69813 7.50162 8.82573 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.004127 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.523429 B = 6783.023102 C = 7158.813424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.080 4.080 6 C -0.159 4.159 7 C -0.040 4.040 8 C 0.084 3.916 9 N -0.520 5.520 10 C 0.051 3.949 11 C -0.103 4.103 12 C 0.014 3.986 13 H -0.001 1.001 14 C -0.601 4.601 15 H 0.043 0.957 16 C -0.031 4.031 17 N -0.939 5.939 18 Si 1.115 2.885 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.284 1.284 22 C 0.063 3.937 23 C -0.154 4.154 24 H 0.117 0.883 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 -3.185 -12.403 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.098 4.098 6 C -0.177 4.177 7 C -0.041 4.041 8 C -0.044 4.044 9 N -0.244 5.244 10 C -0.076 4.076 11 C -0.142 4.142 12 C -0.005 4.005 13 H 0.017 0.983 14 C -0.639 4.639 15 H 0.062 0.938 16 C -0.229 4.229 17 N -0.576 5.576 18 Si 0.937 3.063 19 H -0.199 1.199 20 H -0.201 1.201 21 H -0.210 1.210 22 C -0.065 4.065 23 C -0.173 4.173 24 H 0.135 0.865 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.267 -3.804 -10.698 20.665 hybrid contribution -0.266 0.828 -1.761 1.964 sum -17.533 -2.977 -12.459 21.713 Atomic orbital electron populations 1.23336 0.76412 1.05488 1.02294 1.86050 1.23571 1.27005 1.88816 1.19136 0.92152 0.85049 0.96888 1.21495 1.01104 0.91794 1.08518 1.21225 0.94099 0.98057 0.96400 1.21171 0.94594 0.97886 1.04074 1.19527 0.94734 0.92748 0.97057 1.21256 0.91411 1.02070 0.89624 1.64706 1.12386 1.31325 1.15987 1.23150 0.99158 0.89862 0.95433 1.22459 0.96400 0.98303 0.97018 1.19657 0.92964 0.94207 0.93650 0.98322 1.22380 1.40485 0.94506 1.06560 0.93841 1.27154 0.96305 0.98480 1.00979 1.70875 1.43806 1.04894 1.38060 0.82951 0.76102 0.73554 0.73680 1.19909 1.20073 1.20971 1.22722 0.86795 1.00179 0.96789 1.20343 0.92007 0.98218 1.06716 0.86520 0.91899 0.91330 0.83027 0.83001 0.85314 0.92784 0.89672 0.93237 0.90323 0.94375 0.93851 0.92782 0.94280 0.92041 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.19 10.50 -92.45 -0.97 -9.16 16 3 C 0.11 2.92 6.69 22.50 0.15 3.07 16 4 C -0.21 -4.39 9.04 22.36 0.20 -4.19 16 5 C -0.08 -1.65 10.04 22.25 0.22 -1.42 16 6 C -0.16 -3.90 8.83 22.28 0.20 -3.70 16 7 C -0.04 -1.14 5.16 -19.88 -0.10 -1.24 16 8 C 0.08 2.55 4.86 85.55 0.42 2.97 16 9 N -0.52 -19.94 5.23 -887.58 -4.65 -24.59 16 10 C 0.05 1.95 5.67 86.65 0.49 2.44 16 11 C -0.10 -4.92 5.57 31.80 0.18 -4.75 16 12 C 0.01 0.73 2.54 -10.66 -0.03 0.71 16 13 H 0.00 -0.07 7.95 -2.39 -0.02 -0.09 16 14 C -0.60 -34.66 8.38 25.60 0.21 -34.44 16 15 H 0.04 2.51 7.34 -2.91 -0.02 2.49 16 16 C -0.03 -1.80 5.34 84.65 0.45 -1.35 16 17 N -0.94 -57.56 13.45 21.45 0.29 -57.27 16 18 Si 1.11 51.53 29.90 68.60 2.05 53.58 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 C 0.06 2.70 6.31 86.45 0.55 3.25 16 23 C -0.15 -4.47 9.64 22.36 0.22 -4.26 16 24 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 27 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 28 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.05 1.52 7.77 -2.39 -0.02 1.50 16 31 H 0.08 2.46 8.02 -2.38 -0.02 2.44 16 32 H 0.05 1.69 7.81 -2.39 -0.02 1.68 16 33 H 0.08 2.81 7.85 -2.39 -0.02 2.79 16 34 H 0.04 2.01 7.86 -2.39 -0.02 1.99 16 35 H 0.04 2.09 7.10 -2.38 -0.02 2.08 16 36 H 0.26 15.99 5.65 -92.71 -0.52 15.47 16 37 H 0.04 1.52 7.77 -2.39 -0.02 1.50 16 38 H 0.06 2.79 7.39 -2.38 -0.02 2.77 16 39 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -68.17 314.73 2.26 -65.91 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.26 Total: 13.08 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.27 Total: -41.55 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -4.36 Total: -81.86 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.97 Total: -9.16 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -68.17 2.26 -65.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.556 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds