Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00154 * 2 1 4 4 C 1.38756 * 120.05379 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94625 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05270 * 359.75001 * 5 4 3 7 7 C 1.38248 * 120.10870 * 0.50500 * 6 5 4 8 8 C 1.50705 * 119.96904 * 179.76371 * 7 6 5 9 9 N 1.46895 * 109.47189 * 269.72648 * 8 7 6 10 10 C 1.47852 * 111.00234 * 69.15861 * 9 8 7 11 11 C 1.55112 * 104.90740 * 146.23837 * 10 9 8 12 12 C 1.55144 * 101.55991 * 323.16107 * 11 10 9 13 13 H 1.09008 * 110.70344 * 276.96946 * 12 11 10 14 14 C 1.50695 * 110.70915 * 153.90443 * 12 11 10 15 15 H 1.07995 * 120.00496 * 243.80663 * 14 12 11 16 16 C 1.37880 * 119.99572 * 63.80596 * 14 12 11 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.47440 * 111.00033 * 189.99866 * 9 8 7 23 23 C 1.38162 * 120.05571 * 359.49747 * 7 6 5 24 24 H 1.08997 * 109.47336 * 299.99959 * 1 2 3 25 25 H 1.09008 * 109.47216 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.47051 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.02804 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97602 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.94229 * 180.27318 * 6 5 4 30 30 H 1.08996 * 109.46605 * 149.72476 * 8 7 6 31 31 H 1.08996 * 109.46815 * 29.72517 * 8 7 6 32 32 H 1.08998 * 110.37317 * 265.19159 * 10 9 8 33 33 H 1.09000 * 110.37016 * 27.42141 * 10 9 8 34 34 H 1.08998 * 111.14944 * 205.05484 * 11 10 9 35 35 H 1.08996 * 110.92393 * 81.17085 * 11 10 9 36 36 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 37 37 H 1.09004 * 109.89071 * 117.33738 * 22 9 8 38 38 H 1.08997 * 110.02468 * 356.22730 * 22 9 8 39 39 H 1.08003 * 120.02573 * 180.23411 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5982 0.0008 9 7 6.0501 2.6249 -1.3840 10 6 5.6949 3.8977 -2.0471 11 6 6.8754 4.1890 -3.0101 12 6 8.0856 3.6870 -2.1792 13 1 8.4135 4.4519 -1.4751 14 6 9.2192 3.2766 -3.0832 15 1 9.5473 2.2479 -3.1050 16 6 9.8376 4.2145 -3.8827 17 7 9.4384 5.4672 -3.8559 18 14 11.2423 3.7056 -5.0039 19 1 10.7633 2.6772 -5.9621 20 1 12.3488 3.1445 -4.1877 21 1 11.7314 4.8905 -5.7537 22 6 7.5150 2.4645 -1.4301 23 6 3.4311 1.2848 -0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2127 2.3203 0.0014 28 1 1.3340 4.5114 0.0019 29 1 3.7922 4.6381 0.0112 30 1 5.9713 1.7289 0.5145 31 1 5.8756 3.5063 0.5149 32 1 4.7659 3.7878 -2.6065 33 1 5.6015 4.6960 -1.3108 34 1 6.9598 5.2558 -3.2175 35 1 6.7734 3.6201 -3.9342 36 1 8.7087 5.7315 -3.2739 37 1 7.7713 1.5495 -1.9643 38 1 7.9185 2.4282 -0.4182 39 1 4.0206 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261247488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -14.338129 kcal Electronic energy + Delta-G solvation = -19200.476345 eV Core-core repulsion = 16300.918448 eV Total energy + Delta-G solvation = -2899.557897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19640 -38.53643 -37.17616 -33.72736 -31.84147 -30.52413 -29.20388 -28.26373 -27.42432 -25.17322 -23.78354 -22.56130 -21.15644 -20.00550 -19.77311 -17.80343 -16.92351 -16.28484 -15.97024 -15.85361 -15.25666 -14.68374 -14.26859 -13.78863 -13.73435 -13.19639 -13.11406 -12.71024 -12.59849 -12.19848 -12.03867 -11.74264 -11.40964 -11.26026 -11.09866 -10.89814 -10.79113 -10.64404 -10.36570 -10.08454 -9.75383 -9.59362 -8.82212 -8.48269 -8.33815 -8.19437 -7.69411 -6.32034 -4.04198 1.33649 1.47768 3.16881 3.45581 3.47277 3.65705 3.75171 4.54591 4.68603 4.71712 4.84413 4.93718 4.95511 5.11614 5.23690 5.28041 5.37076 5.39017 5.52105 5.66567 5.78132 5.81903 6.00963 6.06597 6.09507 6.19735 6.29016 6.41058 6.45832 6.66552 6.71535 6.77538 6.93870 6.99168 7.25944 7.35395 7.42263 7.67691 7.76555 8.24357 8.44798 8.89667 9.67387 11.05652 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042387 B = 0.003795 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.414841 B = 7376.538145 C = 7626.456486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.148 4.148 7 C -0.026 4.026 8 C 0.086 3.914 9 N -0.525 5.525 10 C 0.043 3.957 11 C -0.119 4.119 12 C 0.018 3.982 13 H 0.019 0.981 14 C -0.590 4.590 15 H 0.051 0.949 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 1.067 2.933 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.283 1.283 22 C 0.055 3.945 23 C -0.131 4.131 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.271 0.729 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.807 -5.955 8.940 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.167 4.167 7 C -0.027 4.027 8 C -0.042 4.042 9 N -0.249 5.249 10 C -0.085 4.085 11 C -0.158 4.158 12 C -0.001 4.001 13 H 0.037 0.963 14 C -0.629 4.629 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.550 5.550 18 Si 0.896 3.104 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.072 4.072 23 C -0.150 4.150 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.861 -5.993 7.571 18.569 hybrid contribution -1.112 0.250 1.565 1.936 sum -16.972 -5.743 9.137 20.113 Atomic orbital electron populations 1.23011 0.78754 1.03674 1.01189 1.86070 1.21082 1.27157 1.88949 1.18994 0.92302 0.83982 0.97039 1.21146 0.99640 0.92493 1.10056 1.20860 0.94492 0.96830 0.97901 1.21020 0.93698 0.98183 1.03812 1.19648 0.95574 0.92052 0.95417 1.21246 0.90170 1.01214 0.91577 1.63654 1.13888 1.34387 1.13001 1.23133 0.99351 0.89178 0.96828 1.22919 0.94218 1.00427 0.98260 1.19973 0.93616 0.92359 0.94133 0.96258 1.21901 1.17984 0.97001 1.25979 0.93103 1.25792 1.00953 0.93747 0.97985 1.70810 1.28411 1.17219 1.38578 0.83563 0.75403 0.75434 0.76008 1.21423 1.21506 1.20869 1.22896 0.84455 1.01257 0.98588 1.20270 0.90963 0.98414 1.05403 0.92866 0.92761 0.88441 0.85888 0.86018 0.86130 0.90260 0.93954 0.91846 0.94887 0.92043 0.91738 0.91730 0.90872 0.94644 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.96 10.50 -19.42 -0.20 -4.16 16 3 C 0.12 1.63 6.69 -39.22 -0.26 1.37 16 4 C -0.21 -2.53 9.04 -39.43 -0.36 -2.88 16 5 C -0.08 -0.99 10.04 -39.60 -0.40 -1.38 16 6 C -0.15 -2.02 8.93 -39.56 -0.35 -2.37 16 7 C -0.03 -0.39 5.09 -104.64 -0.53 -0.92 16 8 C 0.09 1.37 4.72 -4.98 -0.02 1.35 16 9 N -0.53 -10.10 5.15 -232.56 -1.20 -11.30 16 10 C 0.04 0.83 5.62 -2.18 -0.01 0.82 16 11 C -0.12 -2.79 5.78 -24.48 -0.14 -2.93 16 12 C 0.02 0.46 2.45 -89.95 -0.22 0.24 16 13 H 0.02 0.52 8.00 -51.92 -0.42 0.10 16 14 C -0.59 -16.53 8.48 -34.44 -0.29 -16.82 16 15 H 0.05 1.42 7.55 -52.49 -0.40 1.02 16 16 C 0.02 0.55 5.34 -17.82 -0.10 0.46 16 17 N -0.91 -27.30 13.45 55.43 0.75 -26.56 16 18 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 C 0.05 1.18 6.45 -2.84 -0.02 1.16 16 23 C -0.13 -1.91 9.64 -39.44 -0.38 -2.29 16 24 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.05 0.39 7.66 -51.92 -0.40 -0.01 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.12 1.13 6.30 -52.48 -0.33 0.80 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.56 7.50 -52.49 -0.39 1.17 16 30 H 0.08 1.18 7.98 -51.93 -0.41 0.77 16 31 H 0.04 0.67 7.79 -51.93 -0.40 0.26 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.03 0.61 7.00 -51.93 -0.36 0.24 16 34 H 0.06 1.48 6.60 -51.93 -0.34 1.14 16 35 H 0.06 1.61 8.04 -51.93 -0.42 1.19 16 36 H 0.27 7.98 5.44 -40.82 -0.22 7.75 16 37 H 0.07 1.64 7.64 -51.93 -0.40 1.24 16 38 H 0.04 0.71 7.56 -51.93 -0.39 0.31 16 39 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -30.86 313.53 -8.88 -39.74 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.77 Total: 0.44 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.09 Total: -22.98 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.45 Total: -37.86 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.20 Total: -4.16 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.86 -8.88 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.403 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds