Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00154 * 2 1 4 4 C 1.38756 * 120.05379 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94625 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05270 * 359.75001 * 5 4 3 7 7 C 1.38248 * 120.10870 * 0.50500 * 6 5 4 8 8 C 1.50705 * 119.96904 * 179.76371 * 7 6 5 9 9 N 1.46895 * 109.47189 * 269.72648 * 8 7 6 10 10 C 1.47852 * 111.00234 * 69.15861 * 9 8 7 11 11 C 1.55112 * 104.90740 * 146.23837 * 10 9 8 12 12 C 1.55144 * 101.55991 * 323.16107 * 11 10 9 13 13 H 1.09008 * 110.70344 * 276.96946 * 12 11 10 14 14 C 1.50695 * 110.70915 * 153.90443 * 12 11 10 15 15 H 1.07995 * 120.00496 * 243.80663 * 14 12 11 16 16 C 1.37880 * 119.99572 * 63.80596 * 14 12 11 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.47440 * 111.00033 * 189.99866 * 9 8 7 23 23 C 1.38162 * 120.05571 * 359.49747 * 7 6 5 24 24 H 1.08997 * 109.47336 * 299.99959 * 1 2 3 25 25 H 1.09008 * 109.47216 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.47051 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.02804 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97602 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.94229 * 180.27318 * 6 5 4 30 30 H 1.08996 * 109.46605 * 149.72476 * 8 7 6 31 31 H 1.08996 * 109.46815 * 29.72517 * 8 7 6 32 32 H 1.08998 * 110.37317 * 265.19159 * 10 9 8 33 33 H 1.09000 * 110.37016 * 27.42141 * 10 9 8 34 34 H 1.08998 * 111.14944 * 205.05484 * 11 10 9 35 35 H 1.08996 * 110.92393 * 81.17085 * 11 10 9 36 36 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 37 37 H 1.09004 * 109.89071 * 117.33738 * 22 9 8 38 38 H 1.08997 * 110.02468 * 356.22730 * 22 9 8 39 39 H 1.08003 * 120.02573 * 180.23411 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5982 0.0008 9 7 6.0501 2.6249 -1.3840 10 6 5.6949 3.8977 -2.0471 11 6 6.8754 4.1890 -3.0101 12 6 8.0856 3.6870 -2.1792 13 1 8.4135 4.4519 -1.4751 14 6 9.2192 3.2766 -3.0832 15 1 9.5473 2.2479 -3.1050 16 6 9.8376 4.2145 -3.8827 17 7 9.4384 5.4672 -3.8559 18 14 11.2423 3.7056 -5.0039 19 1 10.7633 2.6772 -5.9621 20 1 12.3488 3.1445 -4.1877 21 1 11.7314 4.8905 -5.7537 22 6 7.5150 2.4645 -1.4301 23 6 3.4311 1.2848 -0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2127 2.3203 0.0014 28 1 1.3340 4.5114 0.0019 29 1 3.7922 4.6381 0.0112 30 1 5.9713 1.7289 0.5145 31 1 5.8756 3.5063 0.5149 32 1 4.7659 3.7878 -2.6065 33 1 5.6015 4.6960 -1.3108 34 1 6.9598 5.2558 -3.2175 35 1 6.7734 3.6201 -3.9342 36 1 8.7087 5.7315 -3.2739 37 1 7.7713 1.5495 -1.9643 38 1 7.9185 2.4282 -0.4182 39 1 4.0206 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261247488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -33.117015 kcal Electronic energy + Delta-G solvation = -19201.290659 eV Core-core repulsion = 16300.918448 eV Total energy + Delta-G solvation = -2900.372211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17101 -39.99339 -38.31737 -35.56281 -33.31381 -31.56953 -30.64204 -30.06114 -28.15945 -26.66408 -25.69050 -23.57028 -22.31116 -21.71707 -21.47118 -19.02149 -18.76199 -17.20493 -16.99272 -16.85187 -16.63480 -16.26901 -15.67494 -15.31395 -14.95639 -14.52701 -14.42172 -14.26454 -13.88808 -13.62690 -13.30164 -13.16481 -12.78925 -12.66035 -12.57515 -12.42181 -12.03698 -11.96072 -11.91003 -11.75091 -11.63391 -11.47072 -10.58556 -10.47857 -9.84332 -9.28810 -9.12778 -8.58290 -6.31341 0.33118 0.49148 1.54220 1.61829 1.80961 2.37283 2.58325 2.70341 3.20190 3.24623 3.75328 3.87999 3.99481 4.03004 4.12528 4.27193 4.29835 4.33892 4.40672 4.41190 4.44657 4.52512 4.64245 4.72896 4.74004 4.78870 4.81750 5.04469 5.07162 5.15976 5.32844 5.33842 5.46834 5.48967 5.64722 5.80645 6.00441 6.10592 6.16661 6.23189 6.47849 6.66197 7.48136 8.80294 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042387 B = 0.003795 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.414841 B = 7376.538145 C = 7626.456486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.160 4.160 7 C -0.040 4.040 8 C 0.088 3.912 9 N -0.529 5.529 10 C 0.059 3.941 11 C -0.113 4.113 12 C 0.009 3.991 13 H -0.003 1.003 14 C -0.606 4.606 15 H 0.047 0.953 16 C -0.030 4.030 17 N -0.938 5.938 18 Si 1.113 2.887 19 H -0.273 1.273 20 H -0.271 1.271 21 H -0.285 1.285 22 C 0.066 3.934 23 C -0.151 4.151 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.600 -6.459 9.403 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.098 4.098 6 C -0.179 4.179 7 C -0.041 4.041 8 C -0.040 4.040 9 N -0.253 5.253 10 C -0.069 4.069 11 C -0.151 4.151 12 C -0.011 4.011 13 H 0.015 0.985 14 C -0.644 4.644 15 H 0.065 0.935 16 C -0.228 4.228 17 N -0.575 5.575 18 Si 0.935 3.065 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.210 1.210 22 C -0.061 4.061 23 C -0.170 4.170 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.682 -6.515 8.060 20.495 hybrid contribution -0.672 0.366 1.476 1.663 sum -18.355 -6.149 9.536 21.578 Atomic orbital electron populations 1.23340 0.76410 1.05508 1.02293 1.86048 1.23555 1.26910 1.88795 1.19123 0.92140 0.85027 0.96832 1.21493 1.01121 0.91742 1.08444 1.21210 0.93996 0.98124 0.96435 1.21169 0.94681 0.97833 1.04208 1.19520 0.94626 0.92794 0.97167 1.21274 0.91431 1.01760 0.89495 1.63618 1.12110 1.34145 1.15444 1.22981 0.97849 0.89803 0.96257 1.22705 0.95478 0.98970 0.97996 1.19973 0.93765 0.93366 0.93961 0.98483 1.22281 1.18919 0.96874 1.26368 0.93513 1.27191 1.03013 0.93344 0.99260 1.70914 1.28985 1.18210 1.39430 0.82976 0.73233 0.75444 0.74828 1.19851 1.19639 1.21022 1.22656 0.86006 0.98876 0.98579 1.20326 0.91979 0.98139 1.06594 0.91406 0.91857 0.86472 0.82977 0.83125 0.85758 0.89429 0.93609 0.90702 0.93456 0.93481 0.93889 0.92711 0.92072 0.93305 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.82 10.50 -92.42 -0.97 -8.79 16 3 C 0.11 2.86 6.69 22.51 0.15 3.01 16 4 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16 5 C -0.08 -1.66 10.04 22.26 0.22 -1.44 16 6 C -0.16 -4.04 8.93 22.29 0.20 -3.84 16 7 C -0.04 -1.15 5.09 -19.88 -0.10 -1.26 16 8 C 0.09 2.73 4.72 85.56 0.40 3.14 16 9 N -0.53 -20.09 5.15 -889.67 -4.59 -24.68 16 10 C 0.06 2.25 5.62 86.84 0.49 2.74 16 11 C -0.11 -5.37 5.78 32.05 0.19 -5.19 16 12 C 0.01 0.44 2.45 -10.36 -0.03 0.42 16 13 H 0.00 -0.16 8.00 -2.38 -0.02 -0.18 16 14 C -0.61 -34.56 8.48 25.60 0.22 -34.35 16 15 H 0.05 2.64 7.55 -2.91 -0.02 2.61 16 16 C -0.03 -1.71 5.34 84.66 0.45 -1.25 16 17 N -0.94 -57.17 13.45 21.45 0.29 -56.88 16 18 Si 1.11 50.71 29.90 68.60 2.05 52.76 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 22 C 0.07 2.86 6.45 86.65 0.56 3.42 16 23 C -0.15 -4.28 9.64 22.36 0.22 -4.07 16 24 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.06 0.70 7.66 -2.38 -0.02 0.69 16 26 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 28 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.12 2.97 7.50 -2.91 -0.02 2.95 16 30 H 0.09 2.55 7.98 -2.39 -0.02 2.53 16 31 H 0.05 1.39 7.79 -2.39 -0.02 1.38 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.05 1.69 7.00 -2.39 -0.02 1.67 16 34 H 0.05 2.34 6.60 -2.39 -0.02 2.32 16 35 H 0.04 2.19 8.04 -2.39 -0.02 2.17 16 36 H 0.26 15.93 5.44 -92.70 -0.50 15.43 16 37 H 0.06 2.77 7.64 -2.38 -0.02 2.75 16 38 H 0.05 1.94 7.56 -2.39 -0.02 1.92 16 39 H 0.12 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -66.98 313.53 2.35 -64.63 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.29 Total: 14.36 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 4.28 Total: -41.40 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -4.30 Total: -81.56 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.97 Total: -8.79 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -66.98 2.35 -64.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.512 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds