Wall clock time and date at job start Mon Mar 30 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 113.38453 * 2 1 4 4 C 1.53514 * 114.17163 * 133.08414 * 2 1 3 5 5 N 1.47476 * 87.99668 * 87.65170 * 4 2 1 6 6 C 1.46896 * 111.00163 * 138.67657 * 5 4 2 7 7 C 1.50704 * 109.47389 * 184.84015 * 6 5 4 8 8 C 1.38298 * 119.92960 * 269.72913 * 7 6 5 9 9 C 1.38101 * 120.06490 * 179.72414 * 8 7 6 10 10 C 1.38878 * 119.93302 * 0.52487 * 9 8 7 11 11 O 1.35749 * 120.07021 * 179.72813 * 10 9 8 12 12 C 1.34835 * 116.99765 * 185.73563 * 11 10 9 13 13 H 1.07997 * 120.00141 * 5.42239 * 12 11 10 14 14 C 1.38658 * 119.99715 * 185.42361 * 12 11 10 15 15 N 1.31553 * 119.99795 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99775 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46863 * 89.99897 * 16 14 12 18 18 H 1.48496 * 109.46949 * 209.99690 * 16 14 12 19 19 H 1.48500 * 109.47114 * 330.00050 * 16 14 12 20 20 C 1.38886 * 119.85960 * 359.74583 * 10 9 8 21 21 C 1.38097 * 119.93102 * 0.02562 * 20 10 9 22 22 C 1.47478 * 87.83867 * 26.97955 * 5 4 2 23 23 H 1.09004 * 113.47546 * 87.75796 * 22 5 4 24 24 C 1.52999 * 113.47701 * 218.16293 * 22 5 4 25 25 H 1.09003 * 109.47015 * 306.42381 * 1 2 3 26 26 H 1.09006 * 109.47151 * 66.41894 * 1 2 3 27 27 H 1.08996 * 109.47474 * 186.42347 * 1 2 3 28 28 H 1.09001 * 113.47112 * 332.85341 * 4 2 1 29 29 H 1.08997 * 113.47720 * 202.44901 * 4 2 1 30 30 H 1.08998 * 109.47136 * 304.83979 * 6 5 4 31 31 H 1.08998 * 109.47033 * 64.84049 * 6 5 4 32 32 H 1.07999 * 119.96737 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.03514 * 180.26810 * 9 8 7 34 34 H 0.97007 * 119.99392 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.02882 * 180.02562 * 20 10 9 36 36 H 1.08000 * 119.96645 * 180.02562 * 21 20 10 37 37 H 1.08998 * 109.47634 * 40.49754 * 24 22 5 38 38 H 1.09009 * 109.46971 * 160.49843 * 24 22 5 39 39 H 1.09004 * 109.47148 * 280.49389 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1586 -0.9567 1.0229 5 7 2.0824 -2.0170 0.0007 6 6 3.3007 -2.8376 0.0015 7 6 3.2381 -3.8312 -1.1299 8 6 2.6807 -5.0796 -0.9218 9 6 2.6167 -5.9902 -1.9581 10 6 3.1226 -5.6550 -3.2073 11 8 3.0661 -6.5499 -4.2265 12 6 3.6799 -6.2069 -5.3770 13 1 4.2599 -5.2974 -5.4292 14 6 3.5664 -7.0220 -6.4930 15 7 2.8602 -8.1300 -6.4291 16 14 4.4163 -6.5464 -8.0871 17 1 5.7836 -7.1253 -8.1108 18 1 3.6374 -7.0691 -9.2383 19 1 4.5034 -5.0668 -8.1793 20 6 3.6867 -4.4024 -3.4116 21 6 3.7435 -3.4946 -2.3725 22 6 2.1590 -0.9582 -1.0230 23 1 3.1799 -0.6912 -1.2961 24 6 1.2709 -1.2222 -2.2406 25 1 -0.3633 0.6102 0.8269 26 1 -0.3634 0.4111 -0.9419 27 1 -0.3634 -1.0212 0.1150 28 1 1.5247 -1.1429 1.8898 29 1 3.1793 -0.6900 1.2967 30 1 4.1717 -2.1950 -0.1271 31 1 3.3791 -3.3706 0.9491 32 1 2.2916 -5.3413 0.0511 33 1 2.1775 -6.9635 -1.7962 34 1 2.7812 -8.7004 -7.2098 35 1 4.0805 -4.1387 -4.3820 36 1 4.1816 -2.5202 -2.5308 37 1 0.3158 -1.6318 -1.9118 38 1 1.1005 -0.2877 -2.7755 39 1 1.7635 -1.9348 -2.9021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293045387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:51 Heat of formation + Delta-G solvation = 26.056726 kcal Electronic energy + Delta-G solvation = -19371.146824 eV Core-core repulsion = 16473.340579 eV Total energy + Delta-G solvation = -2897.806245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54968 -38.86028 -36.52970 -32.77614 -32.06467 -30.32465 -29.77962 -29.26241 -26.30005 -25.17693 -23.28201 -23.03059 -21.91619 -20.38428 -18.45090 -17.94463 -16.95547 -16.35809 -15.30285 -14.97108 -14.51896 -14.36750 -14.04947 -13.69513 -13.55292 -13.46552 -12.80874 -12.67183 -12.63288 -12.16986 -12.02328 -11.74948 -11.68551 -11.50428 -11.31497 -11.06505 -10.92359 -10.57826 -10.46290 -10.39686 -10.35128 -10.08034 -9.33192 -8.82549 -8.72622 -8.12168 -7.13480 -6.43343 -4.02035 2.26368 2.33591 3.13389 3.14051 3.18915 3.97954 4.07214 4.31701 4.62432 4.79435 5.09288 5.11195 5.18034 5.29507 5.31015 5.34420 5.43411 5.51524 5.59959 5.72809 5.75486 5.81498 5.85111 5.89330 5.96087 5.98174 6.13446 6.24557 6.30424 6.37675 6.49511 6.63700 6.74776 6.94059 7.09918 7.19614 7.30419 7.43906 7.47237 7.86897 8.01812 9.02457 9.73663 10.74864 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031986 B = 0.004335 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.181961 B = 6457.187297 C = 6838.515079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 H 0.076 0.924 4 C -0.004 4.004 5 N -0.457 5.457 6 C 0.078 3.922 7 C -0.174 4.174 8 C -0.055 4.055 9 C -0.194 4.194 10 C 0.155 3.845 11 O -0.179 6.179 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.234 4.234 21 C -0.063 4.063 22 C 0.034 3.966 23 H 0.071 0.929 24 C -0.136 4.136 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 14.457 10.875 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 H 0.094 0.906 4 C -0.133 4.133 5 N -0.180 5.180 6 C -0.050 4.050 7 C -0.175 4.175 8 C -0.074 4.074 9 C -0.213 4.213 10 C 0.101 3.899 11 O -0.082 6.082 12 C -0.467 4.467 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.253 4.253 21 C -0.081 4.081 22 C -0.075 4.075 23 H 0.089 0.911 24 C -0.194 4.194 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.479 13.511 10.695 17.295 hybrid contribution 1.329 0.728 -0.853 1.739 sum -0.150 14.239 9.842 17.310 Atomic orbital electron populations 1.21466 0.93029 1.02607 1.01175 1.22669 0.96988 0.97426 0.96714 0.90560 1.23805 0.99975 0.92697 0.96857 1.69071 1.34475 1.11130 1.03288 1.21341 0.90870 0.95066 0.97726 1.18989 1.08349 0.95502 0.94681 1.20443 0.96971 0.92613 0.97348 1.20199 1.08755 1.00979 0.91390 1.19400 0.92575 0.88748 0.89145 1.83995 1.66054 1.38653 1.19531 1.21304 1.29117 1.09599 0.86725 0.89191 1.25278 0.97126 0.95381 0.98716 1.70042 1.37566 1.11622 1.30572 0.85731 0.78879 0.78927 0.79999 1.19900 1.20248 1.19239 1.21106 1.09217 0.94902 1.00083 1.20526 0.97824 0.97431 0.92358 1.23380 0.98740 0.91394 0.93988 0.91128 1.21669 1.00210 1.01064 0.96416 0.93015 0.92378 0.91361 0.89992 0.91903 0.94405 0.90865 0.87207 0.86633 0.92052 0.85732 0.88202 0.91688 0.92890 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.40 37.16 0.31 -0.90 16 2 C -0.12 -1.20 4.68 -90.03 -0.42 -1.62 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.00 -0.05 7.27 -7.55 -0.05 -0.10 16 5 N -0.46 -6.09 5.94 -237.72 -1.41 -7.51 16 6 C 0.08 1.09 4.90 -4.98 -0.02 1.07 16 7 C -0.17 -3.04 5.27 -104.57 -0.55 -3.59 16 8 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 16 9 C -0.19 -4.21 9.99 -39.39 -0.39 -4.60 16 10 C 0.16 3.81 6.65 -39.10 -0.26 3.55 16 11 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 12 C -0.39 -11.04 9.44 30.89 0.29 -10.75 16 13 H 0.09 2.36 5.29 -52.49 -0.28 2.08 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 16 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.23 -5.14 9.13 -39.39 -0.36 -5.50 16 21 C -0.06 -1.16 7.91 -39.61 -0.31 -1.47 16 22 C 0.03 0.42 3.05 -71.37 -0.22 0.20 16 23 H 0.07 0.87 7.62 -51.93 -0.40 0.47 16 24 C -0.14 -1.82 8.96 37.16 0.33 -1.49 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.54 7.75 -51.93 -0.40 0.13 16 27 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 28 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 30 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 31 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.12 2.76 5.71 -52.49 -0.30 2.46 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.06 0.91 7.14 -51.93 -0.37 0.54 16 38 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.06 1.00 6.68 -51.93 -0.35 0.65 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -30.20 317.40 -8.83 -39.03 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.80 Total: 3.61 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.14 Total: -25.61 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.65 Total: -32.28 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.20 -8.83 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293045387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.089 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds