Wall clock time and date at job start Mon Mar 30 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 113.38453 * 2 1 4 4 C 1.53514 * 114.17163 * 133.08414 * 2 1 3 5 5 N 1.47476 * 87.99668 * 87.65170 * 4 2 1 6 6 C 1.46896 * 111.00163 * 138.67657 * 5 4 2 7 7 C 1.50704 * 109.47389 * 184.84015 * 6 5 4 8 8 C 1.38298 * 119.92960 * 269.72913 * 7 6 5 9 9 C 1.38101 * 120.06490 * 179.72414 * 8 7 6 10 10 C 1.38878 * 119.93302 * 0.52487 * 9 8 7 11 11 O 1.35749 * 120.07021 * 179.72813 * 10 9 8 12 12 C 1.34835 * 116.99765 * 185.73563 * 11 10 9 13 13 H 1.07997 * 120.00141 * 5.42239 * 12 11 10 14 14 C 1.38658 * 119.99715 * 185.42361 * 12 11 10 15 15 N 1.31553 * 119.99795 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99775 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46863 * 89.99897 * 16 14 12 18 18 H 1.48496 * 109.46949 * 209.99690 * 16 14 12 19 19 H 1.48500 * 109.47114 * 330.00050 * 16 14 12 20 20 C 1.38886 * 119.85960 * 359.74583 * 10 9 8 21 21 C 1.38097 * 119.93102 * 0.02562 * 20 10 9 22 22 C 1.47478 * 87.83867 * 26.97955 * 5 4 2 23 23 H 1.09004 * 113.47546 * 87.75796 * 22 5 4 24 24 C 1.52999 * 113.47701 * 218.16293 * 22 5 4 25 25 H 1.09003 * 109.47015 * 306.42381 * 1 2 3 26 26 H 1.09006 * 109.47151 * 66.41894 * 1 2 3 27 27 H 1.08996 * 109.47474 * 186.42347 * 1 2 3 28 28 H 1.09001 * 113.47112 * 332.85341 * 4 2 1 29 29 H 1.08997 * 113.47720 * 202.44901 * 4 2 1 30 30 H 1.08998 * 109.47136 * 304.83979 * 6 5 4 31 31 H 1.08998 * 109.47033 * 64.84049 * 6 5 4 32 32 H 1.07999 * 119.96737 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.03514 * 180.26810 * 9 8 7 34 34 H 0.97007 * 119.99392 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.02882 * 180.02562 * 20 10 9 36 36 H 1.08000 * 119.96645 * 180.02562 * 21 20 10 37 37 H 1.08998 * 109.47634 * 40.49754 * 24 22 5 38 38 H 1.09009 * 109.46971 * 160.49843 * 24 22 5 39 39 H 1.09004 * 109.47148 * 280.49389 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1586 -0.9567 1.0229 5 7 2.0824 -2.0170 0.0007 6 6 3.3007 -2.8376 0.0015 7 6 3.2381 -3.8312 -1.1299 8 6 2.6807 -5.0796 -0.9218 9 6 2.6167 -5.9902 -1.9581 10 6 3.1226 -5.6550 -3.2073 11 8 3.0661 -6.5499 -4.2265 12 6 3.6799 -6.2069 -5.3770 13 1 4.2599 -5.2974 -5.4292 14 6 3.5664 -7.0220 -6.4930 15 7 2.8602 -8.1300 -6.4291 16 14 4.4163 -6.5464 -8.0871 17 1 5.7836 -7.1253 -8.1108 18 1 3.6374 -7.0691 -9.2383 19 1 4.5034 -5.0668 -8.1793 20 6 3.6867 -4.4024 -3.4116 21 6 3.7435 -3.4946 -2.3725 22 6 2.1590 -0.9582 -1.0230 23 1 3.1799 -0.6912 -1.2961 24 6 1.2709 -1.2222 -2.2406 25 1 -0.3633 0.6102 0.8269 26 1 -0.3634 0.4111 -0.9419 27 1 -0.3634 -1.0212 0.1150 28 1 1.5247 -1.1429 1.8898 29 1 3.1793 -0.6900 1.2967 30 1 4.1717 -2.1950 -0.1271 31 1 3.3791 -3.3706 0.9491 32 1 2.2916 -5.3413 0.0511 33 1 2.1775 -6.9635 -1.7962 34 1 2.7812 -8.7004 -7.2098 35 1 4.0805 -4.1387 -4.3820 36 1 4.1816 -2.5202 -2.5308 37 1 0.3158 -1.6318 -1.9118 38 1 1.1005 -0.2877 -2.7755 39 1 1.7635 -1.9348 -2.9021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293045387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:51 Heat of formation + Delta-G solvation = 6.666814 kcal Electronic energy + Delta-G solvation = -19371.987634 eV Core-core repulsion = 16473.340579 eV Total energy + Delta-G solvation = -2898.647055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55370 -40.58353 -38.26140 -34.45109 -33.57242 -31.87481 -31.03068 -30.40875 -27.78444 -26.85475 -24.32623 -24.08256 -23.59182 -21.94660 -19.84886 -19.32065 -18.81047 -17.38691 -16.60448 -16.41805 -16.22897 -15.60734 -15.49122 -15.43676 -14.95984 -14.67987 -14.34529 -14.10707 -13.74082 -13.63656 -13.24295 -13.11116 -12.90339 -12.69874 -12.62830 -12.50083 -12.30414 -12.13673 -11.91857 -11.76301 -11.36381 -11.18058 -11.01132 -10.77181 -9.76382 -9.69978 -8.89266 -8.47659 -6.15811 0.60223 0.69079 1.33916 1.43470 1.51651 2.17218 2.77764 3.08347 3.32037 3.48440 3.51816 3.93006 3.96042 4.02771 4.18603 4.28760 4.39591 4.44665 4.52248 4.60438 4.61772 4.70767 4.77503 4.82119 4.85434 5.00112 5.08464 5.09575 5.12405 5.12754 5.19711 5.29979 5.37713 5.50313 5.58536 5.66301 5.71299 5.83606 6.02285 6.20415 6.28626 6.97041 7.78583 8.75867 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031986 B = 0.004335 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.181961 B = 6457.187297 C = 6838.515079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 H 0.097 0.903 4 C 0.001 3.999 5 N -0.479 5.479 6 C 0.079 3.921 7 C -0.149 4.149 8 C -0.052 4.052 9 C -0.206 4.206 10 C 0.113 3.887 11 O -0.234 6.234 12 C -0.414 4.414 13 H 0.100 0.900 14 C -0.023 4.023 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.253 1.253 20 C -0.241 4.241 21 C -0.057 4.057 22 C 0.027 3.973 23 H 0.078 0.922 24 C -0.133 4.133 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.273 0.727 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 17.787 12.670 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.127 4.127 3 H 0.116 0.884 4 C -0.127 4.127 5 N -0.202 5.202 6 C -0.048 4.048 7 C -0.150 4.150 8 C -0.071 4.071 9 C -0.225 4.225 10 C 0.063 3.937 11 O -0.140 6.140 12 C -0.490 4.490 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.837 3.163 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.260 4.260 21 C -0.076 4.076 22 C -0.083 4.083 23 H 0.095 0.905 24 C -0.191 4.191 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.599 16.883 12.548 21.044 hybrid contribution 0.991 -0.116 -1.086 1.475 sum 0.392 16.767 11.462 20.314 Atomic orbital electron populations 1.21455 0.92998 1.01745 1.01994 1.22654 0.96959 0.98003 0.95085 0.88444 1.23862 1.01158 0.91258 0.96414 1.69046 1.33894 1.12368 1.04926 1.21380 0.92214 0.94763 0.96482 1.19523 1.04486 0.95594 0.95352 1.20817 0.96225 0.92369 0.97647 1.20439 1.08851 1.01775 0.91454 1.19918 0.94688 0.89749 0.89340 1.83952 1.68412 1.40946 1.20725 1.21796 1.29765 1.10209 0.87202 0.88294 1.26593 0.97818 0.95079 1.02521 1.70190 1.40336 1.13453 1.31968 0.84595 0.77788 0.79317 0.74551 1.18743 1.19509 1.17671 1.21187 1.09139 0.94735 1.00920 1.20816 0.97172 0.97813 0.91752 1.23489 0.99039 0.92054 0.93671 0.90453 1.21633 0.99615 1.01053 0.96778 0.91312 0.92280 0.93283 0.89322 0.90205 0.92591 0.89340 0.84075 0.87118 0.91834 0.86608 0.85166 0.92856 0.91184 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.40 71.98 0.60 -1.42 16 2 C -0.11 -1.74 4.68 -10.41 -0.05 -1.79 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.00 0.02 7.27 83.58 0.61 0.63 16 5 N -0.48 -11.02 5.94 -905.99 -5.38 -16.40 16 6 C 0.08 1.90 4.90 85.56 0.42 2.32 16 7 C -0.15 -4.80 5.27 -19.83 -0.10 -4.91 16 8 C -0.05 -1.86 9.69 22.25 0.22 -1.64 16 9 C -0.21 -9.18 9.99 22.39 0.22 -8.96 16 10 C 0.11 5.84 6.65 22.58 0.15 5.99 16 11 O -0.23 -14.46 9.76 -22.78 -0.22 -14.68 16 12 C -0.41 -24.62 9.44 67.92 0.64 -23.98 16 13 H 0.10 5.42 5.29 -2.91 -0.02 5.40 16 14 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 15 N -0.92 -57.49 13.67 21.61 0.30 -57.19 16 16 Si 1.02 43.45 29.55 68.60 2.03 45.48 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 20 C -0.24 -10.78 9.13 22.39 0.20 -10.58 16 21 C -0.06 -2.02 7.91 22.25 0.18 -1.84 16 22 C 0.03 0.57 3.05 42.23 0.13 0.69 16 23 H 0.08 1.56 7.62 -2.38 -0.02 1.54 16 24 C -0.13 -3.33 8.96 71.98 0.65 -2.69 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.94 7.75 -2.38 -0.02 0.92 16 27 H 0.05 0.99 7.66 -2.39 -0.02 0.97 16 28 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 29 H 0.08 1.09 7.85 -2.39 -0.02 1.07 16 30 H 0.06 1.18 7.50 -2.39 -0.02 1.16 16 31 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 32 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 34 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 35 H 0.12 5.30 5.71 -2.91 -0.02 5.28 16 36 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.05 1.43 7.14 -2.39 -0.02 1.42 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.03 1.04 6.68 -2.38 -0.02 1.03 16 Total: -1.00 -70.36 317.40 2.08 -68.28 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.03 Total: 23.53 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 4.33 Total: -49.02 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -5.08 Total: -73.59 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.22 Total: -14.68 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -70.36 2.08 -68.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293045387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.951 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds