Wall clock time and date at job start Mon Mar 30 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 113.25370 * 2 1 4 4 C 1.53510 * 114.34169 * 226.87377 * 2 1 3 5 5 N 1.47483 * 87.93345 * 272.36527 * 4 2 1 6 6 C 1.46902 * 111.00391 * 221.30016 * 5 4 2 7 7 C 1.50694 * 109.47046 * 265.97186 * 6 5 4 8 8 C 1.38301 * 119.93262 * 89.99487 * 7 6 5 9 9 C 1.38100 * 120.06954 * 180.02562 * 8 7 6 10 10 C 1.38880 * 119.93180 * 0.02562 * 9 8 7 11 11 O 1.35753 * 120.06801 * 179.97438 * 10 9 8 12 12 C 1.34821 * 117.00047 * 5.52931 * 11 10 9 13 13 H 1.07994 * 120.00555 * 354.94530 * 12 11 10 14 14 C 1.38658 * 119.99851 * 174.94789 * 12 11 10 15 15 N 1.31558 * 119.99765 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99990 * 359.97438 * 14 12 11 17 17 H 1.48511 * 109.47027 * 90.00420 * 16 14 12 18 18 H 1.48498 * 109.47442 * 330.00675 * 16 14 12 19 19 H 1.48500 * 109.47423 * 210.00317 * 16 14 12 20 20 C 1.38883 * 119.86060 * 0.24761 * 10 9 8 21 21 C 1.38096 * 119.92664 * 359.50043 * 20 10 9 22 22 C 1.47482 * 87.83572 * 332.99304 * 5 4 2 23 23 H 1.09000 * 113.47746 * 272.24281 * 22 5 4 24 24 C 1.53003 * 113.47942 * 141.83536 * 22 5 4 25 25 H 1.08999 * 109.47426 * 287.05018 * 1 2 3 26 26 H 1.09005 * 109.46962 * 47.04848 * 1 2 3 27 27 H 1.09002 * 109.47279 * 167.04514 * 1 2 3 28 28 H 1.09000 * 113.47466 * 157.60090 * 4 2 1 29 29 H 1.08997 * 113.48287 * 27.13334 * 4 2 1 30 30 H 1.08998 * 109.47490 * 145.96977 * 6 5 4 31 31 H 1.09001 * 109.47066 * 25.97018 * 6 5 4 32 32 H 1.08002 * 119.96460 * 0.02562 * 8 7 6 33 33 H 1.08005 * 120.03545 * 179.97438 * 9 8 7 34 34 H 0.97005 * 119.99347 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.03116 * 179.72180 * 20 10 9 36 36 H 1.08003 * 119.96436 * 180.22542 * 21 20 10 37 37 H 1.09005 * 109.46692 * 79.50406 * 24 22 5 38 38 H 1.08991 * 109.47035 * 199.50488 * 24 22 5 39 39 H 1.09003 * 109.46959 * 319.50797 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9603 1.0014 0.0000 4 6 2.1627 -0.9561 -1.0208 5 7 2.0854 -2.0149 0.0030 6 6 3.3048 -2.8342 0.0063 7 6 3.0990 -4.0446 -0.8675 8 6 3.4182 -3.9874 -2.2120 9 6 3.2303 -5.0948 -3.0154 10 6 2.7198 -6.2666 -2.4721 11 8 2.5335 -7.3566 -3.2595 12 6 2.9698 -7.2739 -4.5325 13 1 3.3683 -6.3428 -4.9074 14 6 2.9069 -8.3844 -5.3604 15 7 3.3331 -8.3039 -6.6024 16 14 2.2184 -9.9952 -4.7118 17 1 0.7538 -10.0407 -4.9541 18 1 2.4822 -10.0950 -3.2539 19 1 2.8714 -11.1304 -5.4118 20 6 2.3950 -6.3190 -1.1228 21 6 2.5901 -5.2099 -0.3236 22 6 2.1585 -0.9543 1.0252 23 1 3.1785 -0.6857 1.3001 24 6 1.2679 -1.2173 2.2412 25 1 -0.3634 0.3013 0.9825 26 1 -0.3633 0.7003 -0.7522 27 1 -0.3634 -1.0015 -0.2304 28 1 3.1839 -0.6880 -1.2919 29 1 1.5312 -1.1446 -1.8889 30 1 3.5246 -3.1544 1.0247 31 1 4.1385 -2.2463 -0.3777 32 1 3.8147 -3.0758 -2.6340 33 1 3.4793 -5.0494 -4.0654 34 1 3.2887 -9.0807 -7.1817 35 1 1.9937 -7.2274 -0.6984 36 1 2.3411 -5.2512 0.7265 37 1 1.7599 -1.9283 2.9049 38 1 1.0953 -0.2823 2.7740 39 1 0.3140 -1.6286 1.9108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293045392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:53 Heat of formation + Delta-G solvation = 28.284513 kcal Electronic energy + Delta-G solvation = -19087.617277 eV Core-core repulsion = 16189.907636 eV Total energy + Delta-G solvation = -2897.709641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58299 -39.04392 -36.71972 -32.83701 -32.21713 -30.25057 -30.03341 -29.52054 -26.50716 -25.10003 -23.30267 -23.08469 -21.99923 -20.34246 -18.52687 -17.85163 -17.26072 -16.42636 -15.41926 -15.13670 -14.71050 -14.27179 -14.02807 -13.83528 -13.70351 -13.44895 -12.94687 -12.72409 -12.61718 -12.23215 -12.20074 -12.07023 -11.87357 -11.56386 -11.42181 -11.07436 -10.91154 -10.75002 -10.56821 -10.35957 -10.25096 -10.11911 -9.35782 -8.86035 -8.78015 -8.21011 -7.27172 -6.39804 -4.06283 2.17884 2.23456 3.24061 3.26756 3.41789 3.97869 4.24972 4.25489 4.55625 4.70000 4.89404 5.01689 5.07028 5.14878 5.17738 5.26651 5.32479 5.39615 5.58338 5.62399 5.67894 5.68352 5.76359 5.79282 5.82920 5.91453 5.93397 6.11048 6.17031 6.29489 6.33017 6.47871 6.61455 6.83060 7.05812 7.17084 7.29800 7.35902 7.65025 7.82602 8.06448 8.95733 9.58997 10.67981 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.003909 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.627009 B = 7161.311957 C = 7389.798340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.117 4.117 3 H 0.077 0.923 4 C 0.002 3.998 5 N -0.455 5.455 6 C 0.075 3.925 7 C -0.163 4.163 8 C -0.065 4.065 9 C -0.221 4.221 10 C 0.160 3.840 11 O -0.219 6.219 12 C -0.389 4.389 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.881 5.881 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.259 1.259 19 H -0.283 1.283 20 C -0.193 4.193 21 C -0.058 4.058 22 C 0.021 3.979 23 H 0.071 0.929 24 C -0.133 4.133 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.279 0.721 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 14.546 14.242 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.136 4.136 3 H 0.095 0.905 4 C -0.127 4.127 5 N -0.178 5.178 6 C -0.052 4.052 7 C -0.164 4.164 8 C -0.084 4.084 9 C -0.240 4.240 10 C 0.108 3.892 11 O -0.124 6.124 12 C -0.465 4.465 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.519 5.519 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.184 1.184 19 H -0.208 1.208 20 C -0.212 4.212 21 C -0.077 4.077 22 C -0.088 4.088 23 H 0.089 0.911 24 C -0.191 4.191 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.796 13.679 14.073 19.824 hybrid contribution 0.690 -0.192 -0.111 0.725 sum -2.105 13.487 13.962 19.526 Atomic orbital electron populations 1.21489 0.92983 1.02655 1.01300 1.22623 0.97002 0.97419 0.96563 0.90492 1.23875 1.00228 0.91666 0.96911 1.69056 1.34502 1.10994 1.03240 1.21394 0.91010 0.93760 0.99048 1.19067 1.08508 0.94709 0.94129 1.20599 0.98014 0.96959 0.92821 1.21231 1.08095 0.93467 1.01206 1.19129 0.92872 0.87009 0.90185 1.83569 1.71200 1.34266 1.23373 1.20766 1.41804 1.00680 0.83213 0.87694 1.24464 0.96202 0.98805 0.94540 1.69652 1.44995 1.31804 1.05473 0.86178 0.79279 0.81337 0.80095 1.19881 1.18356 1.20837 1.20197 1.09856 0.99726 0.91448 1.20435 0.97136 0.91890 0.98258 1.23443 0.98685 0.92539 0.94141 0.91079 1.21626 1.00301 1.00963 0.96219 0.92411 0.92834 0.91338 0.91633 0.89670 0.91073 0.93836 0.87817 0.85079 0.91095 0.86625 0.87101 0.93025 0.92476 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.50 37.16 0.32 -0.85 16 2 C -0.12 -1.11 4.66 -90.09 -0.42 -1.53 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.00 0.02 7.25 -7.54 -0.05 -0.03 16 5 N -0.46 -5.83 5.92 -237.89 -1.41 -7.24 16 6 C 0.08 1.02 4.94 -4.98 -0.02 1.00 16 7 C -0.16 -2.78 5.47 -104.58 -0.57 -3.35 16 8 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 9 C -0.22 -4.87 9.17 -39.39 -0.36 -5.23 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 O -0.22 -5.90 8.59 0.07 0.00 -5.90 16 12 C -0.39 -11.13 9.95 30.89 0.31 -10.83 16 13 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 14 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 15 N -0.88 -25.71 13.96 55.48 0.77 -24.93 16 16 Si 0.91 21.95 28.62 -169.99 -4.86 17.09 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.19 -3.95 9.99 -39.39 -0.39 -4.34 16 21 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 22 C 0.02 0.22 3.61 -71.43 -0.26 -0.04 16 23 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 24 C -0.13 -1.23 8.82 37.16 0.33 -0.90 16 25 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 28 H 0.07 0.70 7.42 -51.93 -0.39 0.32 16 29 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 30 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 31 H 0.04 0.55 7.24 -51.93 -0.38 0.17 16 32 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.13 3.04 5.64 -52.48 -0.30 2.74 16 34 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.69 7.24 -51.93 -0.38 0.31 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -29.57 319.65 -8.79 -38.36 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.86 Total: 1.70 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.26 Total: -23.90 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: -0.63 Total: -32.17 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: 0.00 Total: -5.90 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.57 -8.79 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293045392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.649 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds