Wall clock time and date at job start Mon Mar 30 2020 06:12:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 113.25370 * 2 1
4 4 C 1.53510 * 114.34169 * 226.87377 * 2 1 3
5 5 N 1.47483 * 87.93345 * 272.36527 * 4 2 1
6 6 C 1.46902 * 111.00391 * 221.30016 * 5 4 2
7 7 C 1.50694 * 109.47046 * 265.97186 * 6 5 4
8 8 C 1.38301 * 119.93262 * 89.99487 * 7 6 5
9 9 C 1.38100 * 120.06954 * 180.02562 * 8 7 6
10 10 C 1.38880 * 119.93180 * 0.02562 * 9 8 7
11 11 O 1.35753 * 120.06801 * 179.97438 * 10 9 8
12 12 C 1.34821 * 117.00047 * 5.52931 * 11 10 9
13 13 H 1.07994 * 120.00555 * 354.94530 * 12 11 10
14 14 C 1.38658 * 119.99851 * 174.94789 * 12 11 10
15 15 N 1.31558 * 119.99765 * 180.02562 * 14 12 11
16 16 Si 1.86795 * 119.99990 * 359.97438 * 14 12 11
17 17 H 1.48511 * 109.47027 * 90.00420 * 16 14 12
18 18 H 1.48498 * 109.47442 * 330.00675 * 16 14 12
19 19 H 1.48500 * 109.47423 * 210.00317 * 16 14 12
20 20 C 1.38883 * 119.86060 * 0.24761 * 10 9 8
21 21 C 1.38096 * 119.92664 * 359.50043 * 20 10 9
22 22 C 1.47482 * 87.83572 * 332.99304 * 5 4 2
23 23 H 1.09000 * 113.47746 * 272.24281 * 22 5 4
24 24 C 1.53003 * 113.47942 * 141.83536 * 22 5 4
25 25 H 1.08999 * 109.47426 * 287.05018 * 1 2 3
26 26 H 1.09005 * 109.46962 * 47.04848 * 1 2 3
27 27 H 1.09002 * 109.47279 * 167.04514 * 1 2 3
28 28 H 1.09000 * 113.47466 * 157.60090 * 4 2 1
29 29 H 1.08997 * 113.48287 * 27.13334 * 4 2 1
30 30 H 1.08998 * 109.47490 * 145.96977 * 6 5 4
31 31 H 1.09001 * 109.47066 * 25.97018 * 6 5 4
32 32 H 1.08002 * 119.96460 * 0.02562 * 8 7 6
33 33 H 1.08005 * 120.03545 * 179.97438 * 9 8 7
34 34 H 0.97005 * 119.99347 * 180.02562 * 15 14 12
35 35 H 1.07999 * 120.03116 * 179.72180 * 20 10 9
36 36 H 1.08003 * 119.96436 * 180.22542 * 21 20 10
37 37 H 1.09005 * 109.46692 * 79.50406 * 24 22 5
38 38 H 1.08991 * 109.47035 * 199.50488 * 24 22 5
39 39 H 1.09003 * 109.46959 * 319.50797 * 24 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9603 1.0014 0.0000
4 6 2.1627 -0.9561 -1.0208
5 7 2.0854 -2.0149 0.0030
6 6 3.3048 -2.8342 0.0063
7 6 3.0990 -4.0446 -0.8675
8 6 3.4182 -3.9874 -2.2120
9 6 3.2303 -5.0948 -3.0154
10 6 2.7198 -6.2666 -2.4721
11 8 2.5335 -7.3566 -3.2595
12 6 2.9698 -7.2739 -4.5325
13 1 3.3683 -6.3428 -4.9074
14 6 2.9069 -8.3844 -5.3604
15 7 3.3331 -8.3039 -6.6024
16 14 2.2184 -9.9952 -4.7118
17 1 0.7538 -10.0407 -4.9541
18 1 2.4822 -10.0950 -3.2539
19 1 2.8714 -11.1304 -5.4118
20 6 2.3950 -6.3190 -1.1228
21 6 2.5901 -5.2099 -0.3236
22 6 2.1585 -0.9543 1.0252
23 1 3.1785 -0.6857 1.3001
24 6 1.2679 -1.2173 2.2412
25 1 -0.3634 0.3013 0.9825
26 1 -0.3633 0.7003 -0.7522
27 1 -0.3634 -1.0015 -0.2304
28 1 3.1839 -0.6880 -1.2919
29 1 1.5312 -1.1446 -1.8889
30 1 3.5246 -3.1544 1.0247
31 1 4.1385 -2.2463 -0.3777
32 1 3.8147 -3.0758 -2.6340
33 1 3.4793 -5.0494 -4.0654
34 1 3.2887 -9.0807 -7.1817
35 1 1.9937 -7.2274 -0.6984
36 1 2.3411 -5.2512 0.7265
37 1 1.7599 -1.9283 2.9049
38 1 1.0953 -0.2823 2.7740
39 1 0.3140 -1.6286 1.9108
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000293045392.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:12:53
Heat of formation + Delta-G solvation = 28.284513 kcal
Electronic energy + Delta-G solvation = -19087.617277 eV
Core-core repulsion = 16189.907636 eV
Total energy + Delta-G solvation = -2897.709641 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.58299 -39.04392 -36.71972 -32.83701 -32.21713 -30.25057 -30.03341 -29.52054
-26.50716 -25.10003 -23.30267 -23.08469 -21.99923 -20.34246 -18.52687 -17.85163
-17.26072 -16.42636 -15.41926 -15.13670 -14.71050 -14.27179 -14.02807 -13.83528
-13.70351 -13.44895 -12.94687 -12.72409 -12.61718 -12.23215 -12.20074 -12.07023
-11.87357 -11.56386 -11.42181 -11.07436 -10.91154 -10.75002 -10.56821 -10.35957
-10.25096 -10.11911 -9.35782 -8.86035 -8.78015 -8.21011 -7.27172 -6.39804
-4.06283 2.17884 2.23456 3.24061 3.26756 3.41789 3.97869 4.24972
4.25489 4.55625 4.70000 4.89404 5.01689 5.07028 5.14878 5.17738
5.26651 5.32479 5.39615 5.58338 5.62399 5.67894 5.68352 5.76359
5.79282 5.82920 5.91453 5.93397 6.11048 6.17031 6.29489 6.33017
6.47871 6.61455 6.83060 7.05812 7.17084 7.29800 7.35902 7.65025
7.82602 8.06448 8.95733 9.58997 10.67981
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.038472 B = 0.003909 C = 0.003788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.627009 B = 7161.311957 C = 7389.798340
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.117 4.117
3 H 0.077 0.923
4 C 0.002 3.998
5 N -0.455 5.455
6 C 0.075 3.925
7 C -0.163 4.163
8 C -0.065 4.065
9 C -0.221 4.221
10 C 0.160 3.840
11 O -0.219 6.219
12 C -0.389 4.389
13 H 0.106 0.894
14 C 0.063 3.937
15 N -0.881 5.881
16 Si 0.906 3.094
17 H -0.273 1.273
18 H -0.259 1.259
19 H -0.283 1.283
20 C -0.193 4.193
21 C -0.058 4.058
22 C 0.021 3.979
23 H 0.071 0.929
24 C -0.133 4.133
25 H 0.057 0.943
26 H 0.053 0.947
27 H 0.068 0.932
28 H 0.066 0.934
29 H 0.085 0.915
30 H 0.071 0.929
31 H 0.043 0.957
32 H 0.104 0.896
33 H 0.132 0.868
34 H 0.279 0.721
35 H 0.116 0.884
36 H 0.111 0.889
37 H 0.051 0.949
38 H 0.056 0.944
39 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.210 14.546 14.242 20.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.136 4.136
3 H 0.095 0.905
4 C -0.127 4.127
5 N -0.178 5.178
6 C -0.052 4.052
7 C -0.164 4.164
8 C -0.084 4.084
9 C -0.240 4.240
10 C 0.108 3.892
11 O -0.124 6.124
12 C -0.465 4.465
13 H 0.123 0.877
14 C -0.140 4.140
15 N -0.519 5.519
16 Si 0.731 3.269
17 H -0.199 1.199
18 H -0.184 1.184
19 H -0.208 1.208
20 C -0.212 4.212
21 C -0.077 4.077
22 C -0.088 4.088
23 H 0.089 0.911
24 C -0.191 4.191
25 H 0.076 0.924
26 H 0.072 0.928
27 H 0.087 0.913
28 H 0.084 0.916
29 H 0.103 0.897
30 H 0.089 0.911
31 H 0.062 0.938
32 H 0.122 0.878
33 H 0.149 0.851
34 H 0.089 0.911
35 H 0.134 0.866
36 H 0.129 0.871
37 H 0.070 0.930
38 H 0.075 0.925
39 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -2.796 13.679 14.073 19.824
hybrid contribution 0.690 -0.192 -0.111 0.725
sum -2.105 13.487 13.962 19.526
Atomic orbital electron populations
1.21489 0.92983 1.02655 1.01300 1.22623 0.97002 0.97419 0.96563
0.90492 1.23875 1.00228 0.91666 0.96911 1.69056 1.34502 1.10994
1.03240 1.21394 0.91010 0.93760 0.99048 1.19067 1.08508 0.94709
0.94129 1.20599 0.98014 0.96959 0.92821 1.21231 1.08095 0.93467
1.01206 1.19129 0.92872 0.87009 0.90185 1.83569 1.71200 1.34266
1.23373 1.20766 1.41804 1.00680 0.83213 0.87694 1.24464 0.96202
0.98805 0.94540 1.69652 1.44995 1.31804 1.05473 0.86178 0.79279
0.81337 0.80095 1.19881 1.18356 1.20837 1.20197 1.09856 0.99726
0.91448 1.20435 0.97136 0.91890 0.98258 1.23443 0.98685 0.92539
0.94141 0.91079 1.21626 1.00301 1.00963 0.96219 0.92411 0.92834
0.91338 0.91633 0.89670 0.91073 0.93836 0.87817 0.85079 0.91095
0.86625 0.87101 0.93025 0.92476 0.91366
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.16 8.50 37.16 0.32 -0.85 16
2 C -0.12 -1.11 4.66 -90.09 -0.42 -1.53 16
3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
4 C 0.00 0.02 7.25 -7.54 -0.05 -0.03 16
5 N -0.46 -5.83 5.92 -237.89 -1.41 -7.24 16
6 C 0.08 1.02 4.94 -4.98 -0.02 1.00 16
7 C -0.16 -2.78 5.47 -104.58 -0.57 -3.35 16
8 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16
9 C -0.22 -4.87 9.17 -39.39 -0.36 -5.23 16
10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16
11 O -0.22 -5.90 8.59 0.07 0.00 -5.90 16
12 C -0.39 -11.13 9.95 30.89 0.31 -10.83 16
13 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16
14 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16
15 N -0.88 -25.71 13.96 55.48 0.77 -24.93 16
16 Si 0.91 21.95 28.62 -169.99 -4.86 17.09 16
17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16
18 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16
19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
20 C -0.19 -3.95 9.99 -39.39 -0.39 -4.34 16
21 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16
22 C 0.02 0.22 3.61 -71.43 -0.26 -0.04 16
23 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16
24 C -0.13 -1.23 8.82 37.16 0.33 -0.90 16
25 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16
26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16
28 H 0.07 0.70 7.42 -51.93 -0.39 0.32 16
29 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16
30 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16
31 H 0.04 0.55 7.24 -51.93 -0.38 0.17 16
32 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16
33 H 0.13 3.04 5.64 -52.48 -0.30 2.74 16
34 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16
35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16
36 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16
37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.07 0.69 7.24 -51.93 -0.38 0.31 16
LS Contribution 319.65 15.07 4.82 4.82
Total: -1.00 -29.57 319.65 -8.79 -38.36
By element:
Atomic # 1 Polarization: 7.55 SS G_CDS: -5.86 Total: 1.70 kcal
Atomic # 6 Polarization: -21.64 SS G_CDS: -2.26 Total: -23.90 kcal
Atomic # 7 Polarization: -31.54 SS G_CDS: -0.63 Total: -32.17 kcal
Atomic # 8 Polarization: -5.90 SS G_CDS: 0.00 Total: -5.90 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.09 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -29.57 -8.79 -38.36 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000293045392.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.649 kcal
(2) G-P(sol) polarization free energy of solvation -29.573 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds