Wall clock time and date at job start Mon Mar 30 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 113.25370 * 2 1 4 4 C 1.53510 * 114.34169 * 226.87377 * 2 1 3 5 5 N 1.47483 * 87.93345 * 272.36527 * 4 2 1 6 6 C 1.46902 * 111.00391 * 221.30016 * 5 4 2 7 7 C 1.50694 * 109.47046 * 265.97186 * 6 5 4 8 8 C 1.38301 * 119.93262 * 89.99487 * 7 6 5 9 9 C 1.38100 * 120.06954 * 180.02562 * 8 7 6 10 10 C 1.38880 * 119.93180 * 0.02562 * 9 8 7 11 11 O 1.35753 * 120.06801 * 179.97438 * 10 9 8 12 12 C 1.34821 * 117.00047 * 5.52931 * 11 10 9 13 13 H 1.07994 * 120.00555 * 354.94530 * 12 11 10 14 14 C 1.38658 * 119.99851 * 174.94789 * 12 11 10 15 15 N 1.31558 * 119.99765 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99990 * 359.97438 * 14 12 11 17 17 H 1.48511 * 109.47027 * 90.00420 * 16 14 12 18 18 H 1.48498 * 109.47442 * 330.00675 * 16 14 12 19 19 H 1.48500 * 109.47423 * 210.00317 * 16 14 12 20 20 C 1.38883 * 119.86060 * 0.24761 * 10 9 8 21 21 C 1.38096 * 119.92664 * 359.50043 * 20 10 9 22 22 C 1.47482 * 87.83572 * 332.99304 * 5 4 2 23 23 H 1.09000 * 113.47746 * 272.24281 * 22 5 4 24 24 C 1.53003 * 113.47942 * 141.83536 * 22 5 4 25 25 H 1.08999 * 109.47426 * 287.05018 * 1 2 3 26 26 H 1.09005 * 109.46962 * 47.04848 * 1 2 3 27 27 H 1.09002 * 109.47279 * 167.04514 * 1 2 3 28 28 H 1.09000 * 113.47466 * 157.60090 * 4 2 1 29 29 H 1.08997 * 113.48287 * 27.13334 * 4 2 1 30 30 H 1.08998 * 109.47490 * 145.96977 * 6 5 4 31 31 H 1.09001 * 109.47066 * 25.97018 * 6 5 4 32 32 H 1.08002 * 119.96460 * 0.02562 * 8 7 6 33 33 H 1.08005 * 120.03545 * 179.97438 * 9 8 7 34 34 H 0.97005 * 119.99347 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.03116 * 179.72180 * 20 10 9 36 36 H 1.08003 * 119.96436 * 180.22542 * 21 20 10 37 37 H 1.09005 * 109.46692 * 79.50406 * 24 22 5 38 38 H 1.08991 * 109.47035 * 199.50488 * 24 22 5 39 39 H 1.09003 * 109.46959 * 319.50797 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9603 1.0014 0.0000 4 6 2.1627 -0.9561 -1.0208 5 7 2.0854 -2.0149 0.0030 6 6 3.3048 -2.8342 0.0063 7 6 3.0990 -4.0446 -0.8675 8 6 3.4182 -3.9874 -2.2120 9 6 3.2303 -5.0948 -3.0154 10 6 2.7198 -6.2666 -2.4721 11 8 2.5335 -7.3566 -3.2595 12 6 2.9698 -7.2739 -4.5325 13 1 3.3683 -6.3428 -4.9074 14 6 2.9069 -8.3844 -5.3604 15 7 3.3331 -8.3039 -6.6024 16 14 2.2184 -9.9952 -4.7118 17 1 0.7538 -10.0407 -4.9541 18 1 2.4822 -10.0950 -3.2539 19 1 2.8714 -11.1304 -5.4118 20 6 2.3950 -6.3190 -1.1228 21 6 2.5901 -5.2099 -0.3236 22 6 2.1585 -0.9543 1.0252 23 1 3.1785 -0.6857 1.3001 24 6 1.2679 -1.2173 2.2412 25 1 -0.3634 0.3013 0.9825 26 1 -0.3633 0.7003 -0.7522 27 1 -0.3634 -1.0015 -0.2304 28 1 3.1839 -0.6880 -1.2919 29 1 1.5312 -1.1446 -1.8889 30 1 3.5246 -3.1544 1.0247 31 1 4.1385 -2.2463 -0.3777 32 1 3.8147 -3.0758 -2.6340 33 1 3.4793 -5.0494 -4.0654 34 1 3.2887 -9.0807 -7.1817 35 1 1.9937 -7.2274 -0.6984 36 1 2.3411 -5.2512 0.7265 37 1 1.7599 -1.9283 2.9049 38 1 1.0953 -0.2823 2.7740 39 1 0.3140 -1.6286 1.9108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293045392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:52 Heat of formation + Delta-G solvation = 9.938895 kcal Electronic energy + Delta-G solvation = -19088.412803 eV Core-core repulsion = 16189.907636 eV Total energy + Delta-G solvation = -2898.505167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51878 -40.73611 -38.40401 -34.56287 -33.71429 -31.83182 -30.88266 -30.70957 -27.91792 -26.77613 -24.33358 -24.07010 -23.59910 -21.87841 -19.81572 -19.30725 -19.11057 -17.39101 -16.77036 -16.38921 -16.19045 -15.74486 -15.57987 -15.46597 -14.94357 -14.64697 -14.37306 -14.23167 -14.05101 -13.75598 -13.32722 -13.03565 -12.87673 -12.79190 -12.56619 -12.51892 -12.44909 -12.02690 -11.90326 -11.83251 -11.34795 -11.26967 -11.04433 -10.89231 -9.81448 -9.71197 -8.98388 -8.51156 -6.23811 0.56520 0.62971 1.30387 1.35078 1.50949 2.27367 2.71403 2.98693 3.12187 3.29553 3.47575 3.87990 3.94453 4.06211 4.15882 4.25143 4.35998 4.41951 4.52532 4.57631 4.59101 4.61754 4.76401 4.82981 4.92135 4.97889 5.01723 5.05883 5.10943 5.20139 5.24484 5.32129 5.40768 5.52005 5.57993 5.61256 5.75771 5.83995 5.90329 6.20569 6.28133 6.83153 7.57912 8.60598 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.003909 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.627009 B = 7161.311957 C = 7389.798340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.478 5.478 6 C 0.078 3.922 7 C -0.139 4.139 8 C -0.067 4.067 9 C -0.237 4.237 10 C 0.118 3.882 11 O -0.246 6.246 12 C -0.401 4.401 13 H 0.079 0.921 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.263 1.263 19 H -0.266 1.266 20 C -0.192 4.192 21 C -0.054 4.054 22 C 0.025 3.975 23 H 0.085 0.915 24 C -0.132 4.132 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.285 0.715 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 16.131 17.466 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.127 4.127 3 H 0.115 0.885 4 C -0.134 4.134 5 N -0.201 5.201 6 C -0.050 4.050 7 C -0.140 4.140 8 C -0.085 4.085 9 C -0.256 4.256 10 C 0.069 3.931 11 O -0.154 6.154 12 C -0.477 4.477 13 H 0.097 0.903 14 C -0.188 4.188 15 N -0.565 5.565 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.187 1.187 19 H -0.191 1.191 20 C -0.211 4.211 21 C -0.073 4.073 22 C -0.084 4.084 23 H 0.103 0.897 24 C -0.189 4.189 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.033 15.305 17.327 23.317 hybrid contribution 0.779 -0.371 -0.896 1.244 sum -2.254 14.934 16.431 22.318 Atomic orbital electron populations 1.21471 0.93008 1.01493 1.02290 1.22615 0.96934 0.98004 0.95146 0.88469 1.23959 1.00738 0.92153 0.96590 1.69004 1.33945 1.12257 1.04872 1.21423 0.92067 0.92459 0.99066 1.19608 1.04620 0.96019 0.93745 1.20860 0.97664 0.96564 0.93438 1.21240 1.09042 0.94662 1.00661 1.19662 0.95063 0.86928 0.91430 1.83509 1.73335 1.35868 1.22658 1.20708 1.42266 1.00179 0.84551 0.90325 1.25288 0.96657 1.02156 0.94718 1.69734 1.46955 1.33117 1.06657 0.85205 0.78914 0.77385 0.79132 1.19055 1.18732 1.19066 1.20514 1.09076 1.01320 0.90223 1.20882 0.95785 0.90892 0.99706 1.23524 0.99689 0.91277 0.93891 0.89665 1.21621 0.99423 1.01937 0.95941 0.91072 0.92189 0.93597 0.90620 0.91522 0.89274 0.92431 0.85441 0.87595 0.90549 0.85455 0.83409 0.92871 0.90637 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.50 71.98 0.61 -1.38 16 2 C -0.11 -1.69 4.66 -10.45 -0.05 -1.74 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.01 -0.11 7.25 83.58 0.61 0.49 16 5 N -0.48 -10.68 5.92 -906.54 -5.36 -16.04 16 6 C 0.08 1.79 4.94 85.55 0.42 2.22 16 7 C -0.14 -4.37 5.47 -19.84 -0.11 -4.48 16 8 C -0.07 -2.42 9.69 22.25 0.22 -2.20 16 9 C -0.24 -10.86 9.17 22.39 0.21 -10.66 16 10 C 0.12 5.76 6.65 22.58 0.15 5.91 16 11 O -0.25 -13.82 8.59 -22.68 -0.19 -14.02 16 12 C -0.40 -24.29 9.95 67.92 0.68 -23.61 16 13 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 14 C 0.01 0.60 5.49 84.83 0.47 1.06 16 15 N -0.92 -56.12 13.96 21.61 0.30 -55.82 16 16 Si 0.97 46.35 28.62 68.60 1.96 48.31 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 C -0.19 -7.71 9.99 22.39 0.22 -7.48 16 21 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 22 C 0.02 0.41 3.61 42.19 0.15 0.56 16 23 H 0.09 1.20 7.91 -2.39 -0.02 1.18 16 24 C -0.13 -1.93 8.82 71.98 0.64 -1.30 16 25 H 0.07 0.93 7.38 -2.39 -0.02 0.92 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.04 0.94 7.90 -2.39 -0.02 0.92 16 28 H 0.08 1.38 7.42 -2.39 -0.02 1.36 16 29 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 30 H 0.09 1.80 8.02 -2.39 -0.02 1.78 16 31 H 0.06 1.21 7.24 -2.39 -0.02 1.19 16 32 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.11 5.33 5.64 -2.91 -0.02 5.32 16 34 H 0.28 15.83 8.31 -92.70 -0.77 15.06 16 35 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 36 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.97 7.24 -2.39 -0.02 0.95 16 Total: -1.00 -67.09 319.65 2.15 -64.94 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.02 Total: 16.79 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 4.42 Total: -44.16 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -5.06 Total: -71.87 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.19 Total: -14.02 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.31 kcal Total: -67.09 2.15 -64.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293045392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.880 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds