Wall clock time and date at job start Mon Mar 30 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38627 * 120.72527 * 2 1 4 4 N 1.32252 * 119.19940 * 179.75461 * 3 2 1 5 5 C 1.32513 * 120.73931 * 0.54335 * 4 3 2 6 6 N 1.38405 * 119.21712 * 179.72646 * 5 4 3 7 7 C 1.46494 * 120.00110 * 359.72173 * 6 5 4 8 8 H 1.09003 * 110.67701 * 328.23839 * 7 6 5 9 9 C 1.54961 * 110.76455 * 91.63894 * 7 6 5 10 10 C 1.54270 * 104.16191 * 156.22179 * 9 7 6 11 11 C 1.53869 * 106.63967 * 336.44607 * 10 9 7 12 12 H 1.09003 * 110.03849 * 119.30531 * 11 10 9 13 13 C 1.50698 * 110.03390 * 240.69268 * 11 10 9 14 14 H 1.07996 * 120.00623 * 118.54486 * 13 11 10 15 15 C 1.37884 * 119.99638 * 298.54572 * 13 11 10 16 16 N 1.31506 * 119.99893 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99881 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47693 * 59.99409 * 17 15 13 19 19 H 1.48495 * 109.47346 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46834 * 299.99938 * 17 15 13 21 21 C 1.54268 * 106.60115 * 359.97438 * 11 10 9 22 22 N 1.32474 * 121.56257 * 359.43905 * 5 4 3 23 23 C 1.32291 * 120.74438 * 0.28445 * 22 5 4 24 24 C 1.50704 * 120.40251 * 180.02562 * 23 22 5 25 25 H 1.09002 * 109.46905 * 269.97977 * 1 2 3 26 26 H 1.09001 * 109.46704 * 29.97858 * 1 2 3 27 27 H 1.08999 * 109.46758 * 149.97913 * 1 2 3 28 28 H 1.08007 * 120.39688 * 0.04537 * 3 2 1 29 29 H 0.97000 * 119.99652 * 179.73015 * 6 5 4 30 30 H 1.08997 * 110.47708 * 37.56776 * 9 7 6 31 31 H 1.09002 * 110.53308 * 274.90168 * 9 7 6 32 32 H 1.09002 * 110.03399 * 217.13605 * 10 9 7 33 33 H 1.08995 * 110.02943 * 95.75505 * 10 9 7 34 34 H 0.97005 * 119.99751 * 180.02562 * 16 15 13 35 35 H 1.08997 * 110.48788 * 142.28685 * 21 11 10 36 36 H 1.09001 * 110.48482 * 264.93365 * 21 11 10 37 37 H 1.09000 * 109.47018 * 89.99610 * 24 23 22 38 38 H 1.09002 * 109.46696 * 209.99443 * 24 23 22 39 39 H 1.08997 * 109.46914 * 329.99432 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2153 1.1917 0.0000 4 7 3.5374 1.1565 0.0049 5 6 4.1841 -0.0001 -0.0009 6 7 5.5682 -0.0001 -0.0013 7 6 6.3007 1.2685 -0.0013 8 1 5.7422 2.0355 -0.5379 9 6 6.6117 1.7234 1.4470 10 6 7.8374 2.6481 1.2973 11 6 8.5364 2.2445 -0.0127 12 1 8.5543 3.0887 -0.7020 13 6 9.9419 1.7822 0.2734 14 1 10.2379 0.7720 0.0322 15 6 10.8502 2.6491 0.8433 16 7 10.4900 3.8794 1.1367 17 14 12.5926 2.0764 1.1973 18 1 13.2432 1.6574 -0.0701 19 1 13.3651 3.1886 1.8067 20 1 12.5546 0.9275 2.1375 21 6 7.7119 1.0876 -0.6139 22 7 3.5374 -1.1562 -0.0009 23 6 2.2150 -1.1914 -0.0005 24 6 1.4871 -2.5110 0.0002 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6937 2.1374 0.0007 29 1 6.0531 -0.8402 -0.0016 30 1 6.8558 0.8646 2.0723 31 1 5.7680 2.2729 1.8646 32 1 8.5147 2.5097 2.1400 33 1 7.5160 3.6883 1.2439 34 1 11.1291 4.4894 1.5373 35 1 7.6701 1.1730 -1.6998 36 1 8.1342 0.1261 -0.3218 37 1 1.3120 -2.8288 1.0280 38 1 0.5322 -2.3994 -0.5134 39 1 2.0908 -3.2591 -0.5136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294863785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:32 Heat of formation + Delta-G solvation = 32.391193 kcal Electronic energy + Delta-G solvation = -19124.489642 eV Core-core repulsion = 16259.250831 eV Total energy + Delta-G solvation = -2865.238811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89410 -37.80070 -35.23686 -33.97172 -32.90003 -31.62117 -29.12546 -28.08000 -27.29737 -25.79928 -23.81941 -23.18025 -21.63274 -19.84077 -19.02626 -17.85691 -17.15735 -16.12270 -15.31157 -14.77821 -14.72887 -14.53259 -14.26897 -13.97291 -13.54773 -13.27948 -13.06267 -12.60171 -12.54176 -12.39008 -12.01890 -11.73047 -11.19696 -10.98919 -10.91873 -10.66388 -10.53577 -10.40855 -10.30677 -10.00034 -9.66503 -9.51683 -9.21953 -8.88403 -8.68559 -8.34467 -7.64340 -5.98826 -4.02301 1.29310 1.33438 3.18376 3.32961 3.37857 3.40311 4.01491 4.26987 4.45344 4.56103 4.85423 4.89938 5.03271 5.29420 5.32219 5.38851 5.48286 5.53919 5.59770 5.70079 5.74874 5.82276 5.90105 6.03074 6.30949 6.43146 6.56226 6.60929 6.69613 6.78943 6.96360 7.08755 7.29286 7.35982 7.42852 7.73883 7.79466 7.94091 8.00594 8.47788 8.59159 9.00479 9.61314 11.10226 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.050341 B = 0.003738 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.068977 B = 7489.236005 C = 7819.128220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.276 4.276 3 C 0.195 3.805 4 N -0.565 5.565 5 C 0.568 3.432 6 N -0.682 5.682 7 C 0.149 3.851 8 H 0.091 0.909 9 C -0.131 4.131 10 C -0.089 4.089 11 C 0.049 3.951 12 H 0.029 0.971 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.119 4.119 22 N -0.578 5.578 23 C 0.216 3.784 24 C -0.107 4.107 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.162 0.838 29 H 0.410 0.590 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.043 -8.072 -1.779 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.284 4.284 3 C 0.027 3.973 4 N -0.287 5.287 5 C 0.212 3.788 6 N -0.316 5.316 7 C 0.045 3.955 8 H 0.109 0.891 9 C -0.170 4.170 10 C -0.128 4.128 11 C 0.030 3.970 12 H 0.047 0.953 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.158 4.158 22 N -0.301 5.301 23 C 0.067 3.933 24 C -0.164 4.164 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.179 0.821 29 H 0.247 0.753 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.782 -7.707 -1.701 19.455 hybrid contribution 0.365 -0.484 0.337 0.694 sum -17.416 -8.191 -1.364 19.295 Atomic orbital electron populations 1.20484 0.90000 1.02488 1.01855 1.21006 0.98328 0.94824 1.14280 1.22816 0.88592 0.97756 0.88182 1.67991 1.09989 1.28474 1.22257 1.19414 0.87561 0.84293 0.87568 1.44584 0.99813 1.10423 1.76739 1.22273 0.92209 0.83478 0.97543 0.89056 1.22807 0.98982 0.99773 0.95485 1.22011 0.93522 0.95984 1.01289 1.19184 0.93150 0.92104 0.92552 0.95266 1.21200 0.95373 0.97931 1.40755 0.92755 1.24977 0.98413 0.94934 0.95739 1.69972 1.34968 1.04966 1.42728 0.86713 0.84870 0.78185 0.78538 1.20332 1.21359 1.20342 1.22778 0.92615 1.01725 0.98650 1.67730 1.09759 1.28901 1.23736 1.21178 0.88428 0.95338 0.88362 1.20797 0.99587 0.92675 1.03351 0.91785 0.91816 0.91598 0.82115 0.75322 0.92762 0.93249 0.91643 0.94129 0.93020 0.93153 0.92037 0.89950 0.90064 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.67 36.01 0.35 -0.31 16 2 C -0.28 -3.15 5.91 -104.35 -0.62 -3.76 16 3 C 0.20 2.53 11.00 -17.23 -0.19 2.34 16 4 N -0.56 -9.34 9.18 -13.93 -0.13 -9.47 16 5 C 0.57 9.69 8.43 -322.81 -2.72 6.97 16 6 N -0.68 -11.66 5.33 -53.82 -0.29 -11.95 16 7 C 0.15 2.80 3.27 -65.90 -0.22 2.58 16 8 H 0.09 1.78 7.47 -51.93 -0.39 1.39 16 9 C -0.13 -2.64 6.52 -25.03 -0.16 -2.80 16 10 C -0.09 -2.11 5.55 -25.61 -0.14 -2.25 16 11 C 0.05 1.21 2.84 -90.66 -0.26 0.95 16 12 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.51 -14.01 8.34 -34.44 -0.29 -14.29 16 14 H 0.05 1.45 7.55 -52.49 -0.40 1.06 16 15 C 0.06 1.69 5.07 -17.82 -0.09 1.60 16 16 N -0.89 -25.53 12.33 55.43 0.68 -24.85 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.12 -2.44 5.97 -25.07 -0.15 -2.59 16 22 N -0.58 -9.09 10.39 -10.15 -0.11 -9.20 16 23 C 0.22 2.74 6.82 -82.26 -0.56 2.18 16 24 C -0.11 -0.91 9.84 36.01 0.35 -0.56 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 6.08 -51.93 -0.32 0.08 16 28 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.41 6.52 8.68 -40.82 -0.35 6.16 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.70 7.17 -51.93 -0.37 1.33 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.24 7.56 -51.93 -0.39 0.85 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.50 6.07 -51.93 -0.32 0.19 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -30.39 317.51 -10.66 -41.05 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.89 Total: 3.29 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -4.69 Total: -9.95 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.16 Total: -55.46 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.39 -10.66 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294863785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.442 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds