Wall clock time and date at job start Mon Mar 30 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.94456 * 2 1 4 4 N 1.32243 * 120.18269 * 180.02562 * 3 2 1 5 5 C 1.31942 * 120.09140 * 0.02614 * 4 3 2 6 6 C 1.50705 * 120.05413 * 179.97438 * 5 4 3 7 7 C 1.39287 * 119.89611 * 359.97438 * 5 4 3 8 8 N 1.39007 * 120.09718 * 179.97438 * 7 5 4 9 9 C 1.46498 * 119.99812 * 179.97438 * 8 7 5 10 10 H 1.08993 * 110.82277 * 323.11839 * 9 8 7 11 11 C 1.54894 * 110.75336 * 86.46248 * 9 8 7 12 12 C 1.54266 * 104.31305 * 156.31761 * 11 9 8 13 13 C 1.53869 * 106.60031 * 336.32486 * 12 11 9 14 14 H 1.08999 * 110.04012 * 119.28327 * 13 12 11 15 15 C 1.50705 * 110.03024 * 240.71754 * 13 12 11 16 16 H 1.07999 * 120.00434 * 118.54185 * 15 13 12 17 17 C 1.37883 * 119.99691 * 298.53861 * 15 13 12 18 18 N 1.31510 * 119.99984 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99905 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46785 * 90.00656 * 19 17 15 21 21 H 1.48491 * 109.47138 * 210.00335 * 19 17 15 22 22 H 1.48503 * 109.47147 * 330.00875 * 19 17 15 23 23 C 1.54266 * 106.59800 * 359.97438 * 13 12 11 24 24 N 1.32214 * 119.95142 * 180.30210 * 2 1 3 25 25 H 1.08996 * 109.47378 * 89.99296 * 1 2 3 26 26 H 1.08999 * 109.46902 * 209.99869 * 1 2 3 27 27 H 1.09006 * 109.47090 * 329.99263 * 1 2 3 28 28 H 1.07993 * 119.90525 * 0.02744 * 3 2 1 29 29 H 1.09000 * 109.46571 * 270.02231 * 6 5 4 30 30 H 1.09000 * 109.47027 * 30.02156 * 6 5 4 31 31 H 1.09000 * 109.47340 * 150.02349 * 6 5 4 32 32 H 0.97002 * 119.99695 * 0.02562 * 8 7 5 33 33 H 1.09002 * 110.48891 * 37.57187 * 11 9 8 34 34 H 1.08998 * 110.48494 * 275.06274 * 11 9 8 35 35 H 1.09001 * 110.03084 * 95.60669 * 12 11 9 36 36 H 1.08995 * 110.03255 * 217.03136 * 12 11 9 37 37 H 0.96998 * 120.00289 * 179.97438 * 18 17 15 38 38 H 1.09005 * 110.48526 * 142.29451 * 23 13 12 39 39 H 1.09007 * 110.48724 * 264.79935 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1976 0.0000 4 7 3.5193 1.2031 -0.0005 5 6 4.1856 0.0643 -0.0015 6 6 5.6926 0.0715 -0.0027 7 6 3.4939 -1.1447 -0.0016 8 7 4.1916 -2.3470 -0.0032 9 6 3.4619 -3.6173 -0.0026 10 1 2.5633 -3.5477 0.6102 11 6 3.1088 -4.0480 -1.4479 12 6 2.9306 -5.5777 -1.3572 13 6 3.7331 -6.0417 -0.1291 14 1 3.0686 -6.5130 0.5950 15 6 4.8081 -7.0100 -0.5507 16 1 5.8475 -6.7703 -0.3816 17 6 4.4647 -8.2022 -1.1525 18 7 3.1991 -8.4939 -1.3589 19 14 5.7973 -9.4022 -1.6758 20 1 6.0885 -10.3363 -0.5587 21 1 5.3332 -10.1728 -2.8572 22 1 7.0294 -8.6513 -2.0272 23 6 4.3716 -4.7779 0.4833 24 7 2.1671 -1.1456 -0.0060 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.6545 2.1315 0.0004 29 1 6.0550 0.0742 -1.0307 30 1 6.0520 0.9628 0.5116 31 1 6.0606 -0.8171 0.5101 32 1 5.1616 -2.3447 -0.0039 33 1 3.9218 -3.7985 -2.1298 34 1 2.1819 -3.5745 -1.7714 35 1 1.8765 -5.8238 -1.2291 36 1 3.3185 -6.0529 -2.2582 37 1 2.9575 -9.3324 -1.7825 38 1 4.3653 -4.8365 1.5717 39 1 5.3893 -4.6479 0.1150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294903694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:24 Heat of formation + Delta-G solvation = 28.010258 kcal Electronic energy + Delta-G solvation = -19392.673133 eV Core-core repulsion = 16527.244350 eV Total energy + Delta-G solvation = -2865.428783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98752 -37.82088 -35.11322 -34.67771 -32.46242 -30.79103 -30.24390 -28.12103 -26.92010 -25.61565 -24.10839 -22.93884 -21.92617 -19.95922 -19.03629 -17.59022 -17.13733 -16.13801 -15.78684 -15.32785 -14.74469 -14.59656 -14.31131 -13.57247 -13.51104 -12.86010 -12.78682 -12.51805 -12.39862 -12.32926 -12.21454 -11.87897 -11.49400 -11.22556 -11.08100 -10.88001 -10.59243 -10.52546 -10.35137 -9.97841 -9.67499 -9.45673 -9.25708 -8.85629 -8.71460 -8.37774 -7.51801 -6.01978 -4.05662 1.06661 1.49187 3.29019 3.30216 3.36268 3.38787 3.87801 4.29669 4.38343 4.43304 4.62950 4.98512 5.23783 5.25894 5.29671 5.47301 5.51980 5.53909 5.57142 5.65043 5.68773 5.85082 5.89915 5.99447 6.27764 6.38333 6.51897 6.57099 6.64949 6.75588 6.92260 7.16401 7.26321 7.35661 7.42670 7.70769 7.83041 7.90619 7.97059 8.22312 8.44138 8.97304 9.58262 11.07114 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.004387 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.887526 B = 6381.357710 C = 6985.531481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.128 3.872 3 C -0.035 4.035 4 N -0.404 5.404 5 C 0.000 4.000 6 C -0.091 4.091 7 C 0.375 3.625 8 N -0.698 5.698 9 C 0.143 3.857 10 H 0.086 0.914 11 C -0.130 4.130 12 C -0.089 4.089 13 C 0.049 3.951 14 H 0.029 0.971 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.888 5.888 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.119 4.119 24 N -0.499 5.499 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.407 0.593 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.260 0.740 38 H 0.049 0.951 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 16.433 2.381 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.014 4.014 3 C -0.196 4.196 4 N -0.118 5.118 5 C -0.150 4.150 6 C -0.149 4.149 7 C 0.134 3.866 8 N -0.329 5.329 9 C 0.039 3.961 10 H 0.104 0.896 11 C -0.169 4.169 12 C -0.128 4.128 13 C 0.030 3.970 14 H 0.047 0.953 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.157 4.157 24 N -0.223 5.223 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.176 0.824 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.645 16.096 2.303 16.343 hybrid contribution 0.953 -0.774 -0.418 1.297 sum -0.692 15.322 1.885 15.453 Atomic orbital electron populations 1.20676 0.88263 1.03607 1.03290 1.21982 0.97744 0.88724 0.92949 1.22976 0.90352 0.98586 1.07647 1.67946 1.08805 1.28434 1.06606 1.21493 0.97645 0.87969 1.07878 1.20495 0.88440 1.03117 1.02842 1.19217 0.89210 0.87477 0.90740 1.45029 1.08251 1.02502 1.77074 1.22276 0.95399 0.80687 0.97714 0.89588 1.22772 0.99765 0.98875 0.95490 1.22008 0.99029 0.90158 1.01603 1.19185 0.94630 0.90285 0.92928 0.95330 1.21223 0.92583 1.02174 1.39249 0.92727 1.24977 0.95212 0.97926 0.95918 1.69980 1.15677 1.23833 1.43106 0.86658 0.82202 0.81334 0.78177 1.20736 1.21288 1.19973 1.22828 0.98486 0.95348 0.99065 1.67895 1.06365 1.29489 1.18502 0.90132 0.90242 0.90450 0.82432 0.90691 0.90436 0.91197 0.75438 0.92865 0.93273 0.94202 0.91667 0.93055 0.93216 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.19 36.00 0.37 -0.59 16 2 C 0.13 1.71 6.78 -82.44 -0.56 1.15 16 3 C -0.03 -0.44 10.86 -17.38 -0.19 -0.63 16 4 N -0.40 -5.81 10.41 -9.12 -0.09 -5.90 16 5 C 0.00 0.01 6.81 -82.15 -0.56 -0.55 16 6 C -0.09 -0.97 9.76 36.01 0.35 -0.62 16 7 C 0.38 5.85 7.46 -154.72 -1.15 4.69 16 8 N -0.70 -10.67 5.27 -51.70 -0.27 -10.94 16 9 C 0.14 2.57 3.22 -65.73 -0.21 2.35 16 10 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 11 C -0.13 -2.54 6.50 -25.07 -0.16 -2.70 16 12 C -0.09 -2.07 5.56 -25.62 -0.14 -2.21 16 13 C 0.05 1.18 2.85 -90.65 -0.26 0.92 16 14 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.51 -13.73 8.34 -34.44 -0.29 -14.02 16 16 H 0.05 1.43 7.55 -52.49 -0.40 1.04 16 17 C 0.06 1.68 5.07 -17.82 -0.09 1.59 16 18 N -0.89 -25.25 12.33 55.43 0.68 -24.57 16 19 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.12 -2.33 5.96 -24.87 -0.15 -2.48 16 24 N -0.50 -8.03 9.38 -8.48 -0.08 -8.11 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.66 6.56 -51.93 -0.34 0.32 16 32 H 0.41 5.38 6.53 -40.82 -0.27 5.11 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.68 7.17 -51.93 -0.37 1.30 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.17 7.57 -51.93 -0.39 0.77 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -29.98 318.42 -8.98 -38.96 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.95 Total: 2.91 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.05 Total: -13.12 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.24 Total: -49.52 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.98 -8.98 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294903694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.974 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds