Wall clock time and date at job start Mon Mar 30 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.94456 * 2 1 4 4 N 1.32243 * 120.18269 * 180.02562 * 3 2 1 5 5 C 1.31942 * 120.09140 * 0.02614 * 4 3 2 6 6 C 1.50705 * 120.05413 * 179.97438 * 5 4 3 7 7 C 1.39287 * 119.89611 * 359.97438 * 5 4 3 8 8 N 1.39007 * 120.09718 * 179.97438 * 7 5 4 9 9 C 1.46498 * 119.99812 * 179.97438 * 8 7 5 10 10 H 1.08993 * 110.82277 * 323.11839 * 9 8 7 11 11 C 1.54894 * 110.75336 * 86.46248 * 9 8 7 12 12 C 1.54266 * 104.31305 * 156.31761 * 11 9 8 13 13 C 1.53869 * 106.60031 * 336.32486 * 12 11 9 14 14 H 1.08999 * 110.04012 * 119.28327 * 13 12 11 15 15 C 1.50705 * 110.03024 * 240.71754 * 13 12 11 16 16 H 1.07999 * 120.00434 * 118.54185 * 15 13 12 17 17 C 1.37883 * 119.99691 * 298.53861 * 15 13 12 18 18 N 1.31510 * 119.99984 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99905 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46785 * 90.00656 * 19 17 15 21 21 H 1.48491 * 109.47138 * 210.00335 * 19 17 15 22 22 H 1.48503 * 109.47147 * 330.00875 * 19 17 15 23 23 C 1.54266 * 106.59800 * 359.97438 * 13 12 11 24 24 N 1.32214 * 119.95142 * 180.30210 * 2 1 3 25 25 H 1.08996 * 109.47378 * 89.99296 * 1 2 3 26 26 H 1.08999 * 109.46902 * 209.99869 * 1 2 3 27 27 H 1.09006 * 109.47090 * 329.99263 * 1 2 3 28 28 H 1.07993 * 119.90525 * 0.02744 * 3 2 1 29 29 H 1.09000 * 109.46571 * 270.02231 * 6 5 4 30 30 H 1.09000 * 109.47027 * 30.02156 * 6 5 4 31 31 H 1.09000 * 109.47340 * 150.02349 * 6 5 4 32 32 H 0.97002 * 119.99695 * 0.02562 * 8 7 5 33 33 H 1.09002 * 110.48891 * 37.57187 * 11 9 8 34 34 H 1.08998 * 110.48494 * 275.06274 * 11 9 8 35 35 H 1.09001 * 110.03084 * 95.60669 * 12 11 9 36 36 H 1.08995 * 110.03255 * 217.03136 * 12 11 9 37 37 H 0.96998 * 120.00289 * 179.97438 * 18 17 15 38 38 H 1.09005 * 110.48526 * 142.29451 * 23 13 12 39 39 H 1.09007 * 110.48724 * 264.79935 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1976 0.0000 4 7 3.5193 1.2031 -0.0005 5 6 4.1856 0.0643 -0.0015 6 6 5.6926 0.0715 -0.0027 7 6 3.4939 -1.1447 -0.0016 8 7 4.1916 -2.3470 -0.0032 9 6 3.4619 -3.6173 -0.0026 10 1 2.5633 -3.5477 0.6102 11 6 3.1088 -4.0480 -1.4479 12 6 2.9306 -5.5777 -1.3572 13 6 3.7331 -6.0417 -0.1291 14 1 3.0686 -6.5130 0.5950 15 6 4.8081 -7.0100 -0.5507 16 1 5.8475 -6.7703 -0.3816 17 6 4.4647 -8.2022 -1.1525 18 7 3.1991 -8.4939 -1.3589 19 14 5.7973 -9.4022 -1.6758 20 1 6.0885 -10.3363 -0.5587 21 1 5.3332 -10.1728 -2.8572 22 1 7.0294 -8.6513 -2.0272 23 6 4.3716 -4.7779 0.4833 24 7 2.1671 -1.1456 -0.0060 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.6545 2.1315 0.0004 29 1 6.0550 0.0742 -1.0307 30 1 6.0520 0.9628 0.5116 31 1 6.0606 -0.8171 0.5101 32 1 5.1616 -2.3447 -0.0039 33 1 3.9218 -3.7985 -2.1298 34 1 2.1819 -3.5745 -1.7714 35 1 1.8765 -5.8238 -1.2291 36 1 3.3185 -6.0529 -2.2582 37 1 2.9575 -9.3324 -1.7825 38 1 4.3653 -4.8365 1.5717 39 1 5.3893 -4.6479 0.1150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294903694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:24 Heat of formation + Delta-G solvation = 10.471311 kcal Electronic energy + Delta-G solvation = -19393.433678 eV Core-core repulsion = 16527.244350 eV Total energy + Delta-G solvation = -2866.189328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04502 -39.38105 -36.47497 -35.71582 -34.32564 -32.08137 -31.11639 -29.91288 -28.50411 -26.52140 -25.89983 -24.25428 -22.95463 -21.43337 -20.89254 -18.80476 -18.43063 -17.97111 -16.73105 -16.60379 -16.45208 -16.15017 -15.88794 -14.58531 -14.45674 -14.29269 -14.22987 -13.73041 -13.67122 -13.34577 -13.12705 -13.06088 -12.97061 -12.75276 -12.68054 -12.43365 -12.28808 -12.21850 -11.88788 -11.64887 -11.52318 -11.10821 -10.72870 -10.64579 -10.44648 -9.92517 -8.65158 -8.10725 -6.20947 0.04624 0.41042 1.42083 1.43074 1.52654 2.14105 2.44590 2.84288 3.20381 3.33387 3.41937 3.60990 3.91464 4.05813 4.08234 4.23316 4.33966 4.38444 4.67985 4.73836 4.75817 4.80968 4.82608 4.84993 4.91511 5.01141 5.05022 5.08565 5.13657 5.22897 5.37586 5.44014 5.58092 5.66912 5.91869 5.92828 6.12785 6.22703 6.39435 6.77571 6.91165 7.15381 7.46673 8.98094 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.004387 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.887526 B = 6381.357710 C = 6985.531481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.114 3.886 3 C -0.028 4.028 4 N -0.422 5.422 5 C -0.004 4.004 6 C -0.090 4.090 7 C 0.355 3.645 8 N -0.695 5.695 9 C 0.166 3.834 10 H 0.076 0.924 11 C -0.116 4.116 12 C -0.080 4.080 13 C 0.039 3.961 14 H -0.004 1.004 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.107 4.107 24 N -0.529 5.529 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.192 0.808 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.034 0.966 37 H 0.259 0.741 38 H 0.059 0.941 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 18.328 2.509 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.027 4.027 3 C -0.189 4.189 4 N -0.135 5.135 5 C -0.153 4.153 6 C -0.148 4.148 7 C 0.114 3.886 8 N -0.329 5.329 9 C 0.060 3.940 10 H 0.094 0.906 11 C -0.155 4.155 12 C -0.118 4.118 13 C 0.020 3.980 14 H 0.014 0.986 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.145 4.145 24 N -0.253 5.253 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.209 0.791 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.258 0.742 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.750 18.028 2.439 18.207 hybrid contribution 0.581 -1.276 -0.442 1.470 sum -0.170 16.752 1.997 16.871 Atomic orbital electron populations 1.20780 0.85821 1.04659 1.04188 1.22585 0.99405 0.88267 0.92455 1.23576 0.90115 0.99768 1.05451 1.68054 1.09670 1.28449 1.07368 1.21906 0.99121 0.87337 1.06941 1.20588 0.86324 1.04132 1.03734 1.19393 0.89422 0.87797 0.91950 1.44696 1.08524 1.01458 1.78213 1.21760 0.94810 0.81544 0.95855 0.90617 1.22609 1.00079 0.95815 0.97025 1.21785 0.97479 0.92783 0.99795 1.19179 0.94046 0.92001 0.92732 0.98586 1.21614 0.93279 1.02830 1.38851 0.92334 1.25768 0.97192 0.99796 0.96109 1.70114 1.17582 1.24280 1.44031 0.85643 0.79776 0.79105 0.77672 1.20243 1.21320 1.18938 1.22622 0.98749 0.93694 0.99418 1.67885 1.07015 1.31265 1.19149 0.89158 0.91262 0.87322 0.79081 0.89751 0.89591 0.90003 0.74227 0.92436 0.93023 0.95959 0.94695 0.93204 0.92189 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.19 71.23 0.73 -0.90 16 2 C 0.11 2.83 6.78 42.49 0.29 3.12 16 3 C -0.03 -0.65 10.86 84.63 0.92 0.27 16 4 N -0.42 -11.18 10.41 -182.77 -1.90 -13.08 16 5 C 0.00 -0.11 6.81 42.80 0.29 0.18 16 6 C -0.09 -1.72 9.76 71.24 0.69 -1.03 16 7 C 0.35 10.59 7.46 133.01 0.99 11.58 16 8 N -0.70 -20.33 5.27 -317.48 -1.67 -22.00 16 9 C 0.17 5.85 3.22 46.42 0.15 6.00 16 10 H 0.08 2.86 7.70 -2.39 -0.02 2.84 16 11 C -0.12 -4.54 6.50 31.67 0.21 -4.33 16 12 C -0.08 -3.82 5.56 31.32 0.17 -3.64 16 13 C 0.04 1.95 2.85 -10.82 -0.03 1.92 16 14 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 15 C -0.53 -28.47 8.34 25.60 0.21 -28.26 16 16 H 0.06 3.04 7.55 -2.91 -0.02 3.02 16 17 C 0.01 0.55 5.07 84.66 0.43 0.98 16 18 N -0.92 -53.81 12.33 21.45 0.26 -53.55 16 19 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.11 -4.13 5.96 31.80 0.19 -3.94 16 24 N -0.53 -16.48 9.38 -180.74 -1.69 -18.18 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.12 8.08 -2.38 -0.02 1.10 16 28 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.35 6.56 -2.39 -0.02 1.33 16 32 H 0.42 10.23 6.53 -92.71 -0.61 9.62 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.03 1.85 7.17 -2.39 -0.02 1.83 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.07 2.59 7.57 -2.38 -0.02 2.57 16 Total: -1.00 -65.41 318.42 2.70 -62.71 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.44 Total: 16.86 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 5.24 Total: -18.05 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -5.01 Total: -106.81 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.41 2.70 -62.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294903694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.180 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds