Wall clock time and date at job start Mon Mar 30 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38600 * 120.40499 * 2 1 4 4 C 1.38600 * 118.55980 * 179.73278 * 3 2 1 5 5 C 1.50699 * 120.40322 * 180.26195 * 4 3 2 6 6 N 1.32275 * 119.19923 * 0.54207 * 4 3 2 7 7 C 1.32503 * 120.73727 * 359.72438 * 6 4 3 8 8 N 1.38401 * 119.21869 * 180.02562 * 7 6 4 9 9 C 1.46505 * 119.99794 * 359.97236 * 8 7 6 10 10 H 1.09001 * 110.01538 * 326.39567 * 9 8 7 11 11 C 1.54271 * 110.02943 * 87.83702 * 9 8 7 12 12 C 1.54883 * 104.19520 * 95.67488 * 11 9 8 13 13 C 1.54887 * 102.75233 * 37.94154 * 12 11 9 14 14 H 1.08996 * 110.48940 * 80.73371 * 13 12 11 15 15 C 1.50696 * 110.49003 * 203.37991 * 13 12 11 16 16 H 1.08004 * 120.00353 * 114.77286 * 15 13 12 17 17 C 1.37875 * 120.00223 * 294.77545 * 15 13 12 18 18 N 1.31516 * 120.00470 * 179.97438 * 17 15 13 19 19 Si 1.86808 * 119.99779 * 359.97438 * 17 15 13 20 20 H 1.48492 * 109.47137 * 90.00005 * 19 17 15 21 21 H 1.48501 * 109.46913 * 210.00104 * 19 17 15 22 22 H 1.48503 * 109.47059 * 330.00016 * 19 17 15 23 23 C 1.53874 * 110.03397 * 204.99936 * 9 8 7 24 24 N 1.32278 * 120.39607 * 180.27627 * 2 1 3 25 25 H 1.08999 * 109.47015 * 269.72558 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.71710 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.72428 * 1 2 3 28 28 H 1.08007 * 120.71988 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47249 * 270.28146 * 5 4 3 30 30 H 1.09001 * 109.47414 * 30.28073 * 5 4 3 31 31 H 1.09000 * 109.47087 * 150.28409 * 5 4 3 32 32 H 0.96994 * 119.99908 * 179.97438 * 8 7 6 33 33 H 1.09001 * 110.48591 * 214.35375 * 11 9 8 34 34 H 1.09002 * 110.48474 * 336.99322 * 11 9 8 35 35 H 1.09007 * 110.75769 * 279.62736 * 12 11 9 36 36 H 1.09005 * 110.91742 * 156.33264 * 12 11 9 37 37 H 0.97000 * 120.00025 * 179.97438 * 18 17 15 38 38 H 1.08999 * 110.02695 * 0.02562 * 23 9 8 39 39 H 1.09002 * 110.02908 * 121.42895 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1954 0.0000 4 6 3.5938 1.1508 0.0057 5 6 4.3979 2.4253 0.0118 6 7 4.2016 -0.0241 0.0000 7 6 3.5013 -1.1489 -0.0056 8 7 4.1696 -2.3608 -0.0109 9 6 5.6344 -2.3895 -0.0110 10 1 6.0241 -1.5415 -0.5741 11 6 6.1637 -2.3516 1.4375 12 6 6.4042 -3.8398 1.7931 13 6 6.9522 -4.4238 0.4674 14 1 8.0133 -4.1985 0.3610 15 6 6.7193 -5.9116 0.4103 16 1 6.0533 -6.3259 -0.3323 17 6 7.3563 -6.7440 1.3060 18 7 7.1526 -8.0424 1.2565 19 14 8.5086 -6.0276 2.5899 20 1 7.7404 -5.7033 3.8186 21 1 9.5658 -7.0188 2.9143 22 1 9.1358 -4.7913 2.0574 23 6 6.1357 -3.7071 -0.6278 24 7 2.1764 -1.1409 -0.0055 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 0.8925 -0.5094 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6870 2.1412 -0.0004 29 1 4.5918 2.7375 -1.0143 30 1 3.8391 3.2050 0.5294 31 1 5.3445 2.2552 0.5248 32 1 3.6682 -3.1911 -0.0146 33 1 7.0975 -1.7916 1.4879 34 1 5.4198 -1.9154 2.1042 35 1 5.4695 -4.3262 2.0723 36 1 7.1408 -3.9351 2.5910 37 1 7.6011 -8.6280 1.8864 38 1 5.2892 -4.3249 -0.9274 39 1 6.7695 -3.4985 -1.4897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295014031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:22 Heat of formation + Delta-G solvation = 37.365924 kcal Electronic energy + Delta-G solvation = -19347.986598 eV Core-core repulsion = 16482.963507 eV Total energy + Delta-G solvation = -2865.023090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88576 -38.09845 -34.84817 -34.65111 -32.47722 -31.18340 -29.37286 -28.42935 -27.63815 -27.17702 -23.66622 -22.71533 -21.69376 -19.71136 -19.19167 -17.53156 -17.21727 -16.58518 -15.40663 -15.39317 -14.97817 -14.71866 -14.04930 -13.68163 -13.55345 -13.08087 -13.03694 -12.83573 -12.66199 -12.51639 -12.31785 -12.16846 -11.52478 -11.18632 -10.95398 -10.77088 -10.47869 -10.19888 -10.15646 -10.11178 -9.74715 -9.67055 -9.43819 -9.00650 -8.93970 -8.52799 -7.79670 -6.06326 -4.05165 1.26531 1.34008 3.14092 3.30271 3.39093 3.40961 3.98110 4.15504 4.42974 4.43463 4.80892 5.18470 5.21246 5.24072 5.26468 5.36427 5.37918 5.43278 5.47053 5.50151 5.65881 5.69137 5.86427 5.89053 6.12456 6.20637 6.30656 6.43254 6.48988 6.56186 6.64238 6.79624 6.91743 7.12251 7.17269 7.40690 7.52588 7.77101 7.79294 8.52943 8.58352 8.97025 9.56792 11.06894 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032915 B = 0.004520 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.475113 B = 6193.883642 C = 6626.723405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.218 3.782 3 C -0.307 4.307 4 C 0.217 3.783 5 C -0.104 4.104 6 N -0.571 5.571 7 C 0.576 3.424 8 N -0.679 5.679 9 C 0.155 3.845 10 H 0.084 0.916 11 C -0.130 4.130 12 C -0.128 4.128 13 C 0.012 3.988 14 H 0.034 0.966 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.264 1.264 23 C -0.114 4.114 24 N -0.581 5.581 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 20.367 -1.945 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.334 4.334 4 C 0.069 3.931 5 C -0.162 4.162 6 N -0.296 5.296 7 C 0.219 3.781 8 N -0.314 5.314 9 C 0.051 3.949 10 H 0.102 0.898 11 C -0.169 4.169 12 C -0.166 4.166 13 C -0.007 4.007 14 H 0.052 0.948 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.709 3.291 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.189 1.189 23 C -0.152 4.152 24 N -0.306 5.306 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.285 19.263 -1.883 21.054 hybrid contribution -0.033 0.637 0.874 1.083 sum -8.318 19.900 -1.009 21.592 Atomic orbital electron populations 1.20750 0.88393 1.03643 1.03389 1.21332 0.96762 0.87539 0.87409 1.22052 0.95440 0.99802 1.16063 1.21372 0.91296 0.93136 0.87309 1.20744 1.00161 0.91922 1.03335 1.67798 1.40617 0.97505 1.23699 1.19387 0.84708 0.86974 0.87029 1.44719 1.06716 1.03360 1.76592 1.21758 0.76920 0.99492 0.96768 0.89841 1.22764 0.99951 0.98324 0.95847 1.22933 1.00821 0.93219 0.99654 1.19977 0.95048 0.95814 0.89869 0.94770 1.21060 1.27813 0.88740 1.17151 0.90885 1.24995 0.96160 0.94632 0.97275 1.69905 1.43672 1.03006 1.37531 0.86896 0.80994 0.78835 0.82344 1.20463 1.22170 1.18887 1.22446 1.00272 0.93538 0.98919 1.67752 1.07798 1.30901 1.24136 0.89937 0.90377 0.90151 0.84606 0.89955 0.90412 0.90116 0.74749 0.91722 0.92770 0.91607 0.93628 0.92720 0.91221 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.22 36.01 0.37 -0.54 16 2 C 0.22 2.80 6.82 -82.26 -0.56 2.24 16 3 C -0.31 -3.54 9.53 -39.31 -0.37 -3.91 16 4 C 0.22 2.79 6.82 -82.27 -0.56 2.23 16 5 C -0.10 -0.91 10.21 36.00 0.37 -0.54 16 6 N -0.57 -9.09 9.13 -10.15 -0.09 -9.18 16 7 C 0.58 9.72 8.42 -322.80 -2.72 7.00 16 8 N -0.68 -11.55 5.18 -54.70 -0.28 -11.83 16 9 C 0.16 2.70 3.25 -66.81 -0.22 2.49 16 10 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 11 C -0.13 -2.35 6.54 -25.07 -0.16 -2.52 16 12 C -0.13 -2.74 5.31 -24.74 -0.13 -2.87 16 13 C 0.01 0.27 2.28 -90.12 -0.21 0.07 16 14 H 0.03 0.80 7.06 -51.93 -0.37 0.44 16 15 C -0.51 -14.08 9.04 -34.44 -0.31 -14.39 16 16 H 0.07 2.18 7.79 -52.48 -0.41 1.77 16 17 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 18 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 19 Si 0.88 21.83 24.65 -169.99 -4.19 17.64 16 20 H -0.28 -6.79 7.10 56.52 0.40 -6.39 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.26 -6.25 6.47 56.52 0.37 -5.88 16 23 C -0.11 -2.19 6.13 -25.62 -0.16 -2.35 16 24 N -0.58 -9.30 10.40 -10.15 -0.11 -9.40 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.41 6.98 8.43 -40.82 -0.34 6.64 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 35 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 36 H 0.05 0.99 5.27 -51.93 -0.27 0.72 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 1.38 7.13 -51.93 -0.37 1.01 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -31.71 314.70 -9.88 -41.59 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.96 Total: 4.46 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -4.76 Total: -11.16 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.29 Total: -57.27 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.19 Total: 17.64 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.71 -9.88 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295014031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.954 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds