Wall clock time and date at job start Mon Mar 30 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38600 * 120.40499 * 2 1 4 4 C 1.38600 * 118.55980 * 179.73278 * 3 2 1 5 5 C 1.50699 * 120.40322 * 180.26195 * 4 3 2 6 6 N 1.32275 * 119.19923 * 0.54207 * 4 3 2 7 7 C 1.32503 * 120.73727 * 359.72438 * 6 4 3 8 8 N 1.38401 * 119.21869 * 180.02562 * 7 6 4 9 9 C 1.46505 * 119.99794 * 359.97236 * 8 7 6 10 10 H 1.09001 * 110.01538 * 326.39567 * 9 8 7 11 11 C 1.54271 * 110.02943 * 87.83702 * 9 8 7 12 12 C 1.54883 * 104.19520 * 95.67488 * 11 9 8 13 13 C 1.54887 * 102.75233 * 37.94154 * 12 11 9 14 14 H 1.08996 * 110.48940 * 80.73371 * 13 12 11 15 15 C 1.50696 * 110.49003 * 203.37991 * 13 12 11 16 16 H 1.08004 * 120.00353 * 114.77286 * 15 13 12 17 17 C 1.37875 * 120.00223 * 294.77545 * 15 13 12 18 18 N 1.31516 * 120.00470 * 179.97438 * 17 15 13 19 19 Si 1.86808 * 119.99779 * 359.97438 * 17 15 13 20 20 H 1.48492 * 109.47137 * 90.00005 * 19 17 15 21 21 H 1.48501 * 109.46913 * 210.00104 * 19 17 15 22 22 H 1.48503 * 109.47059 * 330.00016 * 19 17 15 23 23 C 1.53874 * 110.03397 * 204.99936 * 9 8 7 24 24 N 1.32278 * 120.39607 * 180.27627 * 2 1 3 25 25 H 1.08999 * 109.47015 * 269.72558 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.71710 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.72428 * 1 2 3 28 28 H 1.08007 * 120.71988 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47249 * 270.28146 * 5 4 3 30 30 H 1.09001 * 109.47414 * 30.28073 * 5 4 3 31 31 H 1.09000 * 109.47087 * 150.28409 * 5 4 3 32 32 H 0.96994 * 119.99908 * 179.97438 * 8 7 6 33 33 H 1.09001 * 110.48591 * 214.35375 * 11 9 8 34 34 H 1.09002 * 110.48474 * 336.99322 * 11 9 8 35 35 H 1.09007 * 110.75769 * 279.62736 * 12 11 9 36 36 H 1.09005 * 110.91742 * 156.33264 * 12 11 9 37 37 H 0.97000 * 120.00025 * 179.97438 * 18 17 15 38 38 H 1.08999 * 110.02695 * 0.02562 * 23 9 8 39 39 H 1.09002 * 110.02908 * 121.42895 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1954 0.0000 4 6 3.5938 1.1508 0.0057 5 6 4.3979 2.4253 0.0118 6 7 4.2016 -0.0241 0.0000 7 6 3.5013 -1.1489 -0.0056 8 7 4.1696 -2.3608 -0.0109 9 6 5.6344 -2.3895 -0.0110 10 1 6.0241 -1.5415 -0.5741 11 6 6.1637 -2.3516 1.4375 12 6 6.4042 -3.8398 1.7931 13 6 6.9522 -4.4238 0.4674 14 1 8.0133 -4.1985 0.3610 15 6 6.7193 -5.9116 0.4103 16 1 6.0533 -6.3259 -0.3323 17 6 7.3563 -6.7440 1.3060 18 7 7.1526 -8.0424 1.2565 19 14 8.5086 -6.0276 2.5899 20 1 7.7404 -5.7033 3.8186 21 1 9.5658 -7.0188 2.9143 22 1 9.1358 -4.7913 2.0574 23 6 6.1357 -3.7071 -0.6278 24 7 2.1764 -1.1409 -0.0055 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 0.8925 -0.5094 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6870 2.1412 -0.0004 29 1 4.5918 2.7375 -1.0143 30 1 3.8391 3.2050 0.5294 31 1 5.3445 2.2552 0.5248 32 1 3.6682 -3.1911 -0.0146 33 1 7.0975 -1.7916 1.4879 34 1 5.4198 -1.9154 2.1042 35 1 5.4695 -4.3262 2.0723 36 1 7.1408 -3.9351 2.5910 37 1 7.6011 -8.6280 1.8864 38 1 5.2892 -4.3249 -0.9274 39 1 6.7695 -3.4985 -1.4897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295014031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:22 Heat of formation + Delta-G solvation = 18.677811 kcal Electronic energy + Delta-G solvation = -19348.796975 eV Core-core repulsion = 16482.963507 eV Total energy + Delta-G solvation = -2865.833468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92592 -39.59982 -36.20462 -35.59513 -34.41957 -32.47124 -30.33154 -30.05646 -29.02080 -28.12515 -25.54510 -23.85752 -22.69110 -21.29138 -20.77577 -19.03066 -18.62187 -18.00830 -16.82282 -16.53394 -16.29508 -16.06693 -15.68745 -14.83270 -14.68192 -14.28905 -14.23403 -14.14796 -13.86136 -13.79131 -13.27718 -13.10191 -12.90064 -12.85148 -12.61218 -12.31079 -11.89806 -11.71342 -11.65554 -11.53079 -11.30870 -11.18678 -11.04569 -10.92256 -10.69566 -10.00292 -8.95385 -8.28586 -6.31485 0.29395 0.32384 1.33361 1.35964 1.46687 1.97150 2.34755 2.94173 3.07005 3.22632 3.59496 3.77054 3.87708 3.88492 4.14987 4.33871 4.45651 4.56639 4.61266 4.66542 4.72181 4.76245 4.80419 4.82040 4.90189 4.93423 4.98842 5.02736 5.03878 5.11461 5.24562 5.26529 5.42799 5.62106 5.63916 5.75455 6.02768 6.25101 6.32529 6.61356 6.75068 7.33877 7.47214 8.88305 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032915 B = 0.004520 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.475113 B = 6193.883642 C = 6626.723405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.199 3.801 3 C -0.295 4.295 4 C 0.200 3.800 5 C -0.099 4.099 6 N -0.592 5.592 7 C 0.556 3.444 8 N -0.690 5.690 9 C 0.171 3.829 10 H 0.093 0.907 11 C -0.117 4.117 12 C -0.125 4.125 13 C 0.008 3.992 14 H 0.038 0.962 15 C -0.512 4.512 16 H 0.033 0.967 17 C 0.012 3.988 18 N -0.953 5.953 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.295 1.295 22 H -0.240 1.240 23 C -0.107 4.107 24 N -0.610 5.610 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.176 0.824 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.409 0.591 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.055 0.945 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 24.291 -1.449 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.052 3.948 3 C -0.320 4.320 4 C 0.053 3.947 5 C -0.156 4.156 6 N -0.318 5.318 7 C 0.199 3.801 8 N -0.325 5.325 9 C 0.066 3.934 10 H 0.111 0.889 11 C -0.155 4.155 12 C -0.163 4.163 13 C -0.011 4.011 14 H 0.056 0.944 15 C -0.550 4.550 16 H 0.051 0.949 17 C -0.185 4.185 18 N -0.594 5.594 19 Si 0.767 3.233 20 H -0.196 1.196 21 H -0.223 1.223 22 H -0.164 1.164 23 C -0.146 4.146 24 N -0.335 5.335 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.091 0.909 28 H 0.193 0.807 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.508 23.260 -1.399 24.806 hybrid contribution -0.119 -0.533 0.636 0.839 sum -8.628 22.726 -0.763 24.321 Atomic orbital electron populations 1.20862 0.85668 1.04793 1.04414 1.22103 0.98630 0.87310 0.86752 1.22505 0.95122 1.00911 1.13486 1.22157 0.92615 0.93451 0.86504 1.20854 0.99708 0.90580 1.04508 1.67821 1.41267 0.98141 1.24582 1.19513 0.85294 0.87084 0.88187 1.44590 1.06336 1.03653 1.77962 1.21492 0.77503 0.98220 0.96156 0.88870 1.22673 1.00911 0.95851 0.96108 1.22781 0.99697 0.95402 0.98414 1.19949 0.95839 0.92989 0.92356 0.94423 1.21379 1.26319 0.91605 1.15659 0.94875 1.25859 0.98114 0.94799 0.99701 1.70058 1.45578 1.04691 1.39068 0.85905 0.78849 0.78847 0.79701 1.19628 1.22251 1.16382 1.22329 0.99605 0.94168 0.98459 1.67768 1.07713 1.32836 1.25192 0.88774 0.87313 0.90937 0.80700 0.88574 0.87541 0.90748 0.75359 0.89832 0.92689 0.93472 0.93712 0.92691 0.92631 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.22 71.24 0.73 -0.76 16 2 C 0.20 4.70 6.82 42.58 0.29 4.99 16 3 C -0.30 -5.80 9.53 22.44 0.21 -5.59 16 4 C 0.20 4.58 6.82 42.58 0.29 4.87 16 5 C -0.10 -1.38 10.21 71.24 0.73 -0.65 16 6 N -0.59 -17.94 9.13 -186.04 -1.70 -19.63 16 7 C 0.56 18.48 8.42 261.48 2.20 20.69 16 8 N -0.69 -23.55 5.18 -326.97 -1.69 -25.24 16 9 C 0.17 5.80 3.25 45.72 0.15 5.95 16 10 H 0.09 3.01 7.49 -2.39 -0.02 3.00 16 11 C -0.12 -4.02 6.54 31.67 0.21 -3.81 16 12 C -0.13 -5.23 5.31 31.88 0.17 -5.06 16 13 C 0.01 0.35 2.28 -10.47 -0.02 0.33 16 14 H 0.04 1.71 7.06 -2.39 -0.02 1.69 16 15 C -0.51 -29.16 9.04 25.60 0.23 -28.93 16 16 H 0.03 2.09 7.79 -2.91 -0.02 2.07 16 17 C 0.01 0.70 5.46 84.65 0.46 1.16 16 18 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 19 Si 0.94 45.00 24.65 68.60 1.69 46.69 16 20 H -0.27 -12.53 7.10 99.48 0.71 -11.82 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.24 -10.49 6.47 99.48 0.64 -9.85 16 23 C -0.11 -4.14 6.13 31.32 0.19 -3.95 16 24 N -0.61 -19.19 10.40 -186.03 -1.93 -21.13 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 0.92 8.09 -2.39 -0.02 0.91 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.41 14.33 8.43 -92.71 -0.78 13.55 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.05 2.12 8.05 -2.38 -0.02 2.10 16 36 H 0.04 1.86 5.27 -2.38 -0.01 1.85 16 37 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.05 2.28 7.13 -2.39 -0.02 2.27 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -71.15 314.70 2.71 -68.44 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.20 Total: 21.75 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.84 Total: -10.77 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -5.03 Total: -126.10 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.69 Total: 46.69 kcal Total: -71.15 2.71 -68.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295014031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.120 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds