Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99895 * 2 1 4 4 H 1.09000 * 110.87443 * 32.38774 * 3 2 1 5 5 C 1.55146 * 110.98716 * 268.54438 * 3 2 1 6 6 C 1.54319 * 103.01551 * 206.22018 * 5 3 2 7 7 N 1.47437 * 107.23615 * 22.28293 * 6 5 3 8 8 C 1.46898 * 111.00091 * 123.26179 * 7 6 5 9 9 H 1.09004 * 109.46977 * 298.09937 * 8 7 6 10 10 C 1.50694 * 109.47269 * 58.09754 * 8 7 6 11 11 H 1.08001 * 119.99776 * 55.45827 * 10 8 7 12 12 C 1.37872 * 120.00369 * 235.72611 * 10 8 7 13 13 N 1.31514 * 120.00464 * 176.59121 * 12 10 8 14 14 Si 1.86805 * 120.00062 * 356.59671 * 12 10 8 15 15 H 1.48498 * 109.47130 * 85.25584 * 14 12 10 16 16 H 1.48500 * 109.47249 * 205.25664 * 14 12 10 17 17 H 1.48505 * 109.46784 * 325.25528 * 14 12 10 18 18 C 1.50699 * 109.47605 * 178.10375 * 8 7 6 19 19 C 1.38239 * 119.99993 * 313.60364 * 18 8 7 20 20 C 1.38230 * 120.00125 * 179.76723 * 19 18 8 21 21 C 1.38232 * 120.00051 * 0.47429 * 20 19 18 22 22 C 1.38240 * 120.00105 * 359.79922 * 21 20 19 23 23 C 1.38236 * 119.99780 * 359.95151 * 22 21 20 24 24 C 1.47849 * 108.56672 * 0.99172 * 7 6 5 25 25 H 1.09000 * 109.46955 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47185 * 299.99954 * 1 2 3 27 27 H 1.08999 * 109.47066 * 60.00426 * 1 2 3 28 28 H 1.08996 * 110.70355 * 87.84105 * 5 3 2 29 29 H 1.08998 * 110.70882 * 324.60081 * 5 3 2 30 30 H 1.09011 * 109.88768 * 262.88017 * 6 5 3 31 31 H 1.08998 * 110.02583 * 141.76961 * 6 5 3 32 32 H 0.97001 * 120.00696 * 180.02562 * 13 12 10 33 33 H 1.08006 * 119.99375 * 359.97438 * 19 18 8 34 34 H 1.08000 * 119.99769 * 180.25373 * 20 19 18 35 35 H 1.07999 * 120.00274 * 179.76842 * 21 20 19 36 36 H 1.07998 * 120.00267 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.99801 * 180.02562 * 23 22 21 38 38 H 1.08995 * 110.37356 * 94.73383 * 24 7 6 39 39 H 1.08999 * 110.37267 * 217.07079 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3825 2.0101 0.5455 5 6 2.2698 1.7981 -1.4481 6 6 3.4357 2.7939 -1.2726 7 7 4.1193 2.4486 -0.0128 8 6 5.5441 2.1763 -0.2445 9 1 5.6467 1.3201 -0.9113 10 6 6.1903 3.3834 -0.8739 11 1 6.1232 4.3462 -0.3892 12 6 6.8626 3.2598 -2.0713 13 7 7.3688 4.3245 -2.6542 14 14 7.0542 1.5801 -2.8658 15 1 5.8499 1.2774 -3.6802 16 1 8.2553 1.5797 -3.7392 17 1 7.2099 0.5478 -1.8096 18 6 6.2178 1.8734 1.0691 19 6 5.9856 2.6804 2.1672 20 6 6.5998 2.3998 3.3734 21 6 7.4539 1.3180 3.4789 22 6 7.6905 0.5143 2.3793 23 6 7.0723 0.7919 1.1745 24 6 3.4454 1.2747 0.5821 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.3896 2.3019 -1.8474 29 1 2.5650 0.9685 -2.0904 30 1 3.0490 3.8116 -1.2178 31 1 4.1305 2.7059 -2.1078 32 1 7.8414 4.2376 -3.4969 33 1 5.3217 3.5281 2.0836 34 1 6.4152 3.0278 4.2323 35 1 7.9367 1.1009 4.4203 36 1 8.3581 -0.3306 2.4616 37 1 7.2569 0.1638 0.3155 38 1 3.9541 0.3564 0.2893 39 1 3.4165 1.3638 1.6680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300103039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -28.417301 kcal Electronic energy + Delta-G solvation = -20130.348935 eV Core-core repulsion = 17230.180519 eV Total energy + Delta-G solvation = -2900.168416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76577 -39.55603 -37.83067 -35.10345 -33.43719 -31.61680 -30.52655 -29.93319 -28.39718 -26.87463 -24.72476 -23.34212 -22.40060 -21.90818 -20.97457 -19.07609 -18.05658 -17.44538 -17.21474 -16.40823 -16.02240 -15.82575 -15.66249 -15.30423 -14.88370 -14.77455 -14.27601 -14.23201 -14.11533 -13.75270 -13.42944 -13.05468 -12.96940 -12.70881 -12.41676 -12.32399 -12.16326 -12.02109 -11.76990 -11.66391 -11.51960 -11.34011 -10.80919 -10.53016 -9.64395 -9.35868 -9.05050 -8.36689 -6.38644 0.65833 0.71531 1.22119 1.25529 1.33249 2.22778 2.60608 2.96452 3.16347 3.41883 3.73704 3.77604 4.05974 4.17109 4.26997 4.31677 4.35782 4.44110 4.48956 4.56291 4.57582 4.64403 4.78168 4.82398 4.86552 4.87360 4.94027 4.99837 5.06892 5.23632 5.24901 5.35383 5.44370 5.73005 5.76853 5.97230 6.07695 6.19334 6.29771 6.36806 6.58351 6.69699 7.25753 8.79440 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.009426 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.889378 B = 2969.691114 C = 4298.872139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.089 3.911 4 H 0.094 0.906 5 C -0.157 4.157 6 C 0.057 3.943 7 N -0.521 5.521 8 C 0.217 3.783 9 H 0.004 0.996 10 C -0.484 4.484 11 H 0.041 0.959 12 C 0.028 3.972 13 N -0.934 5.934 14 Si 0.919 3.081 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.251 1.251 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.155 4.155 24 C 0.049 3.951 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.029 0.971 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 -8.923 8.316 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.031 3.969 4 H 0.112 0.888 5 C -0.196 4.196 6 C -0.071 4.071 7 N -0.246 5.246 8 C 0.110 3.890 9 H 0.022 0.978 10 C -0.522 4.522 11 H 0.059 0.941 12 C -0.171 4.171 13 N -0.574 5.574 14 Si 0.744 3.256 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.176 1.176 18 C -0.061 4.061 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.141 4.141 23 C -0.174 4.174 24 C -0.079 4.079 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.120 0.880 38 H 0.048 0.952 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.471 -8.604 8.489 15.356 hybrid contribution 0.415 -0.663 -1.637 1.814 sum -9.056 -9.267 6.852 14.657 Atomic orbital electron populations 1.22994 0.79206 1.03900 1.01007 1.87859 1.21838 1.27483 1.95017 1.23213 0.94102 0.84612 0.95005 0.88830 1.23263 0.99360 0.99053 0.97913 1.22452 0.94173 0.98949 0.91561 1.63770 1.02704 1.33530 1.24625 1.18762 0.85742 0.93996 0.90468 0.97815 1.20817 1.32257 0.94212 1.04932 0.94084 1.25719 0.94911 0.99320 0.97148 1.69995 1.38240 1.30626 1.18500 0.86195 0.78374 0.81880 0.79175 1.19244 1.20830 1.17575 1.20230 0.96674 0.93798 0.95376 1.20974 1.00167 0.98987 0.92728 1.21423 0.97256 0.98196 0.97423 1.21349 0.99285 0.95568 0.99259 1.21293 0.99761 1.00566 0.92433 1.21163 0.99535 0.98266 0.98439 1.22924 0.92846 0.92184 0.99946 0.88278 0.92709 0.93280 0.88548 0.92162 0.91053 0.94611 0.92299 0.87034 0.84063 0.83308 0.84173 0.88043 0.95209 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.89 113.37 1.23 1.71 16 2 O -0.40 -11.53 10.51 -148.98 -1.57 -13.10 16 3 C 0.09 2.66 3.48 31.98 0.11 2.78 16 4 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 5 C -0.16 -4.97 6.68 31.78 0.21 -4.76 16 6 C 0.06 2.27 6.27 86.65 0.54 2.81 16 7 N -0.52 -21.90 4.53 -869.18 -3.93 -25.83 16 8 C 0.22 10.34 1.24 43.42 0.05 10.40 16 9 H 0.00 0.21 4.44 -2.38 -0.01 0.20 16 10 C -0.48 -27.25 7.68 25.60 0.20 -27.06 16 11 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 12 C 0.03 1.63 5.28 84.65 0.45 2.08 16 13 N -0.93 -57.31 13.96 21.45 0.30 -57.01 16 14 Si 0.92 44.32 26.64 68.60 1.83 46.15 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.25 -11.54 5.80 99.48 0.58 -10.96 16 18 C -0.06 -2.61 4.05 -19.86 -0.08 -2.69 16 19 C -0.11 -4.37 9.18 22.27 0.20 -4.17 16 20 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 21 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 22 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 23 C -0.16 -6.22 9.67 22.27 0.22 -6.01 16 24 C 0.05 1.77 5.56 86.77 0.48 2.25 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 0.89 8.11 -2.39 -0.02 0.87 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 31 H 0.04 1.66 6.45 -2.39 -0.02 1.64 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.11 4.60 7.92 -2.91 -0.02 4.58 16 34 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.10 4.13 7.09 -2.91 -0.02 4.11 16 38 H 0.03 1.17 7.76 -2.39 -0.02 1.15 16 39 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -66.05 314.83 1.80 -64.25 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.88 Total: 19.46 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 4.29 Total: -33.92 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.63 Total: -82.84 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.57 Total: -13.10 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.83 Total: 46.15 kcal Total: -66.05 1.80 -64.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300103039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.831 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds