Wall clock time and date at job start Mon Mar 30 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00092 * 2 1 4 4 H 1.09000 * 110.64680 * 328.30341 * 3 2 1 5 5 C 1.54597 * 110.72312 * 91.45297 * 3 2 1 6 6 C 1.53991 * 105.14132 * 140.31950 * 5 3 2 7 7 N 1.47904 * 107.05845 * 1.22546 * 6 5 3 8 8 C 1.46900 * 111.00012 * 214.16235 * 7 6 5 9 9 H 1.09003 * 109.47639 * 55.86550 * 8 7 6 10 10 C 1.50699 * 109.46982 * 295.86398 * 8 7 6 11 11 H 1.07999 * 119.99975 * 332.21460 * 10 8 7 12 12 C 1.37877 * 120.00171 * 152.20910 * 10 8 7 13 13 N 1.31510 * 119.99925 * 353.98067 * 12 10 8 14 14 Si 1.86797 * 120.00131 * 173.98502 * 12 10 8 15 15 H 1.48504 * 109.47332 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47367 * 119.99914 * 14 12 10 17 17 H 1.48506 * 109.46891 * 240.00064 * 14 12 10 18 18 C 1.50700 * 109.47104 * 175.86829 * 8 7 6 19 19 C 1.38239 * 120.00031 * 227.00454 * 18 8 7 20 20 C 1.38235 * 119.99792 * 179.97438 * 19 18 8 21 21 C 1.38238 * 120.00059 * 0.27500 * 20 19 18 22 22 C 1.38230 * 119.99848 * 359.51830 * 21 20 19 23 23 C 1.38230 * 120.00251 * 0.45724 * 22 21 20 24 24 C 1.48540 * 105.81657 * 334.66939 * 7 6 5 25 25 H 1.09008 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47306 * 299.99662 * 1 2 3 27 27 H 1.09003 * 109.47446 * 59.99912 * 1 2 3 28 28 H 1.08999 * 110.30818 * 21.39950 * 5 3 2 29 29 H 1.09004 * 110.30957 * 259.23091 * 5 3 2 30 30 H 1.09001 * 109.91798 * 241.87364 * 6 5 3 31 31 H 1.08994 * 109.92101 * 120.57714 * 6 5 3 32 32 H 0.97003 * 120.00182 * 180.02562 * 13 12 10 33 33 H 1.07997 * 119.99879 * 0.02562 * 19 18 8 34 34 H 1.08003 * 119.99457 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.99843 * 179.72604 * 21 20 19 36 36 H 1.08002 * 120.00172 * 180.25257 * 22 21 20 37 37 H 1.08003 * 120.00314 * 179.79154 * 23 22 21 38 38 H 1.09005 * 110.66333 * 157.64423 * 24 7 6 39 39 H 1.09000 * 110.67118 * 280.76991 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3737 2.0095 -0.5359 5 6 2.2662 1.7903 1.4455 6 6 3.6254 2.5121 1.3928 7 7 4.0894 2.4616 -0.0106 8 6 5.5523 2.3459 -0.0776 9 1 5.8742 1.4730 0.4904 10 6 6.1814 3.5847 0.5059 11 1 5.6517 4.5254 0.4744 12 6 7.4332 3.5174 1.0800 13 7 8.0281 2.3536 1.2255 14 14 8.2840 5.0791 1.6513 15 1 7.4102 6.2479 1.3762 16 1 8.5509 4.9924 3.1095 17 1 9.5676 5.2387 0.9217 18 6 5.9791 2.1952 -1.5150 19 6 6.8898 1.2166 -1.8668 20 6 7.2808 1.0781 -3.1854 21 6 6.7654 1.9219 -4.1515 22 6 5.8514 2.8977 -3.8004 23 6 5.4600 3.0359 -2.4819 24 6 3.4334 1.2720 -0.6114 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.3152 0.9405 2.1264 29 1 1.4828 2.4812 1.7571 30 1 4.3411 2.0039 2.0390 31 1 3.5077 3.5489 1.7078 32 1 8.9086 2.3061 1.6297 33 1 7.2952 0.5597 -1.1114 34 1 7.9921 0.3132 -3.4602 35 1 7.0742 1.8165 -5.1809 36 1 5.4456 3.5544 -4.5558 37 1 4.7485 3.8005 -2.2071 38 1 3.3883 1.3645 -1.6965 39 1 3.9544 0.3588 -0.3235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300103040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:53 Heat of formation + Delta-G solvation = -13.560929 kcal Electronic energy + Delta-G solvation = -20013.839212 eV Core-core repulsion = 17114.315016 eV Total energy + Delta-G solvation = -2899.524196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08875 -38.04934 -36.32494 -33.30612 -31.30182 -29.93557 -28.97773 -28.30144 -26.54387 -25.52949 -23.07332 -21.61885 -20.96721 -20.22729 -19.45816 -16.73115 -16.41379 -15.77385 -15.71881 -14.75461 -14.56045 -14.34299 -14.12512 -13.84869 -13.17279 -13.06751 -12.71939 -12.46984 -12.15969 -11.79111 -11.69760 -11.49710 -11.26530 -11.10663 -11.00698 -10.78674 -10.66863 -10.17698 -10.15935 -10.05653 -9.81754 -9.40458 -9.25440 -8.58353 -7.97747 -7.62303 -7.37266 -6.12944 -4.15729 2.35767 2.37914 3.25905 3.34348 3.38594 3.90390 4.35722 4.75097 5.01345 5.13066 5.22354 5.29860 5.39333 5.43940 5.47242 5.65055 5.70861 5.77046 5.82365 5.90879 6.09696 6.20444 6.30436 6.33847 6.44854 6.50147 6.58331 6.69129 6.74434 6.93846 6.98889 7.28095 7.31691 7.38141 7.46701 7.70544 7.74710 7.83103 8.05647 8.12133 8.42177 8.95732 9.48537 10.94184 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.007970 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.206462 B = 3512.268661 C = 4832.162305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.083 3.917 4 H 0.070 0.930 5 C -0.155 4.155 6 C 0.059 3.941 7 N -0.508 5.508 8 C 0.229 3.771 9 H 0.040 0.960 10 C -0.497 4.497 11 H 0.066 0.934 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.895 3.105 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.025 4.025 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.103 4.103 24 C 0.042 3.958 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -2.501 -3.779 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.024 3.976 4 H 0.088 0.912 5 C -0.194 4.194 6 C -0.069 4.069 7 N -0.234 5.234 8 C 0.123 3.877 9 H 0.057 0.943 10 C -0.535 4.535 11 H 0.084 0.916 12 C -0.137 4.137 13 N -0.522 5.522 14 Si 0.723 3.277 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.026 4.026 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.121 4.121 24 C -0.087 4.087 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.443 -2.273 -3.966 10.491 hybrid contribution 0.810 0.333 0.731 1.141 sum -8.633 -1.939 -3.235 9.421 Atomic orbital electron populations 1.22709 0.81807 1.02154 0.99707 1.87909 1.19070 1.28347 1.94957 1.23147 0.95225 0.83450 0.95742 0.91191 1.22987 0.98828 1.00285 0.97272 1.22458 0.93038 1.00178 0.91231 1.64873 1.09920 1.35104 1.13494 1.18660 0.81705 0.98665 0.88639 0.94253 1.20945 1.01393 0.94504 1.36702 0.91610 1.24979 0.97489 0.96203 0.95058 1.69924 1.15271 1.23454 1.43566 0.86480 0.79635 0.83504 0.78106 1.19516 1.21038 1.20914 1.20459 0.93944 0.91656 0.96515 1.21084 0.97987 0.98824 0.95162 1.20959 1.00576 0.99743 0.93730 1.20805 1.00014 0.97923 0.98265 1.20988 0.99163 0.98924 0.96451 1.20961 1.00090 0.99186 0.91873 1.23101 0.91735 0.94214 0.99603 0.90120 0.94347 0.94275 0.91209 0.91837 0.93269 0.90884 0.92760 0.86530 0.87671 0.87850 0.87677 0.86301 0.90440 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.88 101.05 1.10 1.47 16 2 O -0.38 -6.04 10.44 -35.23 -0.37 -6.41 16 3 C 0.08 1.33 3.51 -24.87 -0.09 1.24 16 4 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 5 C -0.16 -2.48 6.69 -25.37 -0.17 -2.65 16 6 C 0.06 1.15 5.98 -2.75 -0.02 1.13 16 7 N -0.51 -10.63 4.63 -225.27 -1.04 -11.67 16 8 C 0.23 5.52 1.41 -70.02 -0.10 5.43 16 9 H 0.04 1.07 7.06 -51.93 -0.37 0.71 16 10 C -0.50 -13.06 7.74 -34.44 -0.27 -13.33 16 11 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 12 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 13 N -0.88 -24.52 12.87 55.43 0.71 -23.81 16 14 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.02 -0.56 3.91 -104.62 -0.41 -0.97 16 19 C -0.11 -2.48 9.67 -39.58 -0.38 -2.86 16 20 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 21 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 22 C -0.14 -2.55 10.05 -39.59 -0.40 -2.94 16 23 C -0.10 -2.16 8.76 -39.58 -0.35 -2.50 16 24 C 0.04 0.79 5.40 -1.90 -0.01 0.78 16 25 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.12 2.70 7.99 -52.49 -0.42 2.28 16 34 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.48 7.94 -52.48 -0.42 2.06 16 38 H 0.08 1.45 7.59 -51.93 -0.39 1.06 16 39 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -28.01 321.54 -9.02 -37.03 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.16 Total: 3.63 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.98 Total: -19.61 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.33 Total: -35.48 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.37 Total: -6.41 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.01 -9.02 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300103040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.468 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds