Wall clock time and date at job start Mon Mar 30 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00092 * 2 1 4 4 H 1.09000 * 110.64680 * 328.30341 * 3 2 1 5 5 C 1.54597 * 110.72312 * 91.45297 * 3 2 1 6 6 C 1.53991 * 105.14132 * 140.31950 * 5 3 2 7 7 N 1.47904 * 107.05845 * 1.22546 * 6 5 3 8 8 C 1.46900 * 111.00012 * 214.16235 * 7 6 5 9 9 H 1.09003 * 109.47639 * 55.86550 * 8 7 6 10 10 C 1.50699 * 109.46982 * 295.86398 * 8 7 6 11 11 H 1.07999 * 119.99975 * 332.21460 * 10 8 7 12 12 C 1.37877 * 120.00171 * 152.20910 * 10 8 7 13 13 N 1.31510 * 119.99925 * 353.98067 * 12 10 8 14 14 Si 1.86797 * 120.00131 * 173.98502 * 12 10 8 15 15 H 1.48504 * 109.47332 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47367 * 119.99914 * 14 12 10 17 17 H 1.48506 * 109.46891 * 240.00064 * 14 12 10 18 18 C 1.50700 * 109.47104 * 175.86829 * 8 7 6 19 19 C 1.38239 * 120.00031 * 227.00454 * 18 8 7 20 20 C 1.38235 * 119.99792 * 179.97438 * 19 18 8 21 21 C 1.38238 * 120.00059 * 0.27500 * 20 19 18 22 22 C 1.38230 * 119.99848 * 359.51830 * 21 20 19 23 23 C 1.38230 * 120.00251 * 0.45724 * 22 21 20 24 24 C 1.48540 * 105.81657 * 334.66939 * 7 6 5 25 25 H 1.09008 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47306 * 299.99662 * 1 2 3 27 27 H 1.09003 * 109.47446 * 59.99912 * 1 2 3 28 28 H 1.08999 * 110.30818 * 21.39950 * 5 3 2 29 29 H 1.09004 * 110.30957 * 259.23091 * 5 3 2 30 30 H 1.09001 * 109.91798 * 241.87364 * 6 5 3 31 31 H 1.08994 * 109.92101 * 120.57714 * 6 5 3 32 32 H 0.97003 * 120.00182 * 180.02562 * 13 12 10 33 33 H 1.07997 * 119.99879 * 0.02562 * 19 18 8 34 34 H 1.08003 * 119.99457 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.99843 * 179.72604 * 21 20 19 36 36 H 1.08002 * 120.00172 * 180.25257 * 22 21 20 37 37 H 1.08003 * 120.00314 * 179.79154 * 23 22 21 38 38 H 1.09005 * 110.66333 * 157.64423 * 24 7 6 39 39 H 1.09000 * 110.67118 * 280.76991 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3737 2.0095 -0.5359 5 6 2.2662 1.7903 1.4455 6 6 3.6254 2.5121 1.3928 7 7 4.0894 2.4616 -0.0106 8 6 5.5523 2.3459 -0.0776 9 1 5.8742 1.4730 0.4904 10 6 6.1814 3.5847 0.5059 11 1 5.6517 4.5254 0.4744 12 6 7.4332 3.5174 1.0800 13 7 8.0281 2.3536 1.2255 14 14 8.2840 5.0791 1.6513 15 1 7.4102 6.2479 1.3762 16 1 8.5509 4.9924 3.1095 17 1 9.5676 5.2387 0.9217 18 6 5.9791 2.1952 -1.5150 19 6 6.8898 1.2166 -1.8668 20 6 7.2808 1.0781 -3.1854 21 6 6.7654 1.9219 -4.1515 22 6 5.8514 2.8977 -3.8004 23 6 5.4600 3.0359 -2.4819 24 6 3.4334 1.2720 -0.6114 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.3152 0.9405 2.1264 29 1 1.4828 2.4812 1.7571 30 1 4.3411 2.0039 2.0390 31 1 3.5077 3.5489 1.7078 32 1 8.9086 2.3061 1.6297 33 1 7.2952 0.5597 -1.1114 34 1 7.9921 0.3132 -3.4602 35 1 7.0742 1.8165 -5.1809 36 1 5.4456 3.5544 -4.5558 37 1 4.7485 3.8005 -2.2071 38 1 3.3883 1.3645 -1.6965 39 1 3.9544 0.3588 -0.3235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300103040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:53 Heat of formation + Delta-G solvation = -30.273703 kcal Electronic energy + Delta-G solvation = -20014.563932 eV Core-core repulsion = 17114.315016 eV Total energy + Delta-G solvation = -2900.248916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62309 -39.49185 -37.73057 -35.14391 -33.05941 -31.51534 -30.47556 -29.78561 -28.09648 -26.85975 -24.85820 -23.20540 -22.49058 -21.63936 -21.16630 -18.48611 -17.93880 -17.33452 -17.20218 -16.35346 -16.01826 -15.72747 -15.58787 -15.34468 -14.71746 -14.65266 -14.34324 -14.02414 -13.80473 -13.39362 -13.29989 -12.97337 -12.86609 -12.63431 -12.44944 -12.36033 -12.20891 -11.99614 -11.75403 -11.62634 -11.45928 -11.13588 -10.62738 -10.50968 -9.56193 -9.28013 -9.13740 -8.16265 -6.26060 0.75887 0.80002 1.37797 1.40170 1.51431 2.37841 2.71943 3.09153 3.24990 3.53427 3.74280 3.87421 4.09399 4.28614 4.32660 4.34483 4.44346 4.52466 4.59444 4.60017 4.67798 4.79845 4.84096 4.89512 4.92112 4.97301 5.02265 5.09796 5.15783 5.29060 5.40164 5.46549 5.67444 5.77272 5.81200 6.02136 6.07767 6.22166 6.35405 6.44276 6.58953 6.90847 7.41323 8.89945 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.007970 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.206462 B = 3512.268661 C = 4832.162305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.095 3.905 4 H 0.092 0.908 5 C -0.143 4.143 6 C 0.057 3.943 7 N -0.508 5.508 8 C 0.240 3.760 9 H -0.008 1.008 10 C -0.504 4.504 11 H 0.058 0.942 12 C 0.018 3.982 13 N -0.916 5.916 14 Si 0.954 3.046 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.283 1.283 18 C -0.048 4.048 19 C -0.139 4.139 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.115 4.115 24 C 0.044 3.956 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.015 0.985 31 H 0.074 0.926 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -1.496 -5.746 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.037 3.963 4 H 0.110 0.890 5 C -0.182 4.182 6 C -0.072 4.072 7 N -0.233 5.233 8 C 0.133 3.867 9 H 0.010 0.990 10 C -0.542 4.542 11 H 0.076 0.924 12 C -0.182 4.182 13 N -0.555 5.555 14 Si 0.780 3.220 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.209 1.209 18 C -0.049 4.049 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.085 4.085 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.948 -1.268 -5.935 12.518 hybrid contribution 1.207 -0.054 1.272 1.754 sum -9.742 -1.322 -4.663 10.881 Atomic orbital electron populations 1.22989 0.79225 1.03842 1.01039 1.87880 1.21855 1.27813 1.95069 1.22962 0.93645 0.84394 0.95338 0.89033 1.22910 0.97211 1.00476 0.97553 1.22480 0.94441 1.00316 0.89932 1.64801 1.08167 1.35961 1.14328 1.18347 0.83335 0.95778 0.89254 0.98999 1.21131 1.01567 0.94810 1.36712 0.92362 1.25703 0.98205 0.98794 0.95483 1.70065 1.15465 1.25210 1.44759 0.85561 0.78434 0.80332 0.77707 1.18790 1.20566 1.20939 1.20360 0.95187 0.93218 0.96147 1.21037 0.99118 0.99270 0.96328 1.21258 1.00641 1.00538 0.92552 1.21271 0.98542 0.96344 0.99840 1.21391 0.98331 0.99038 0.95904 1.20999 1.00507 0.98942 0.92862 1.23053 0.93557 0.92149 0.99715 0.88404 0.93037 0.92835 0.91312 0.88646 0.96686 0.90785 0.92950 0.89322 0.85168 0.83623 0.83937 0.86599 0.90294 0.96337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.88 113.37 1.23 1.73 16 2 O -0.41 -12.22 10.44 -148.98 -1.56 -13.77 16 3 C 0.09 2.95 3.51 31.80 0.11 3.06 16 4 H 0.09 2.47 7.88 -2.39 -0.02 2.45 16 5 C -0.14 -4.45 6.69 31.47 0.21 -4.24 16 6 C 0.06 2.28 5.98 86.44 0.52 2.79 16 7 N -0.51 -22.02 4.63 -866.63 -4.02 -26.04 16 8 C 0.24 12.25 1.41 43.42 0.06 12.31 16 9 H -0.01 -0.46 7.06 -2.39 -0.02 -0.48 16 10 C -0.50 -27.58 7.74 25.60 0.20 -27.38 16 11 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 12 C 0.02 1.01 5.45 84.66 0.46 1.47 16 13 N -0.92 -53.48 12.87 21.45 0.28 -53.20 16 14 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 15 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 18 C -0.05 -2.27 3.91 -19.86 -0.08 -2.35 16 19 C -0.14 -6.39 9.67 22.27 0.22 -6.18 16 20 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 21 C -0.14 -4.64 10.05 22.27 0.22 -4.41 16 22 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 23 C -0.11 -4.75 8.76 22.27 0.19 -4.56 16 24 C 0.04 1.70 5.40 86.65 0.47 2.17 16 25 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 28 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.01 0.68 7.67 -2.39 -0.02 0.67 16 31 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.09 4.47 7.99 -2.91 -0.02 4.44 16 34 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.12 4.78 7.94 -2.91 -0.02 4.76 16 38 H 0.08 3.00 7.59 -2.38 -0.02 2.98 16 39 H 0.02 0.81 8.01 -2.39 -0.02 0.79 16 Total: -1.00 -63.96 321.54 2.00 -61.96 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.00 Total: 19.42 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 4.26 Total: -34.48 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.74 Total: -79.24 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.56 Total: -13.77 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.96 2.00 -61.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300103040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.685 kcal (2) G-P(sol) polarization free energy of solvation -63.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds