Wall clock time and date at job start Mon Mar 30 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50693 * 109.47109 * 2 1 4 4 N 1.31796 * 119.08622 * 89.99802 * 3 2 1 5 5 C 1.32550 * 121.01186 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.39970 * 180.02562 * 5 4 3 7 7 C 1.38115 * 119.19666 * 0.02562 * 5 4 3 8 8 C 1.39623 * 118.33764 * 359.97438 * 7 5 4 9 9 N 1.38548 * 120.53408 * 179.97438 * 8 7 5 10 10 C 1.46495 * 119.99944 * 188.78556 * 9 8 7 11 11 C 1.50704 * 109.46990 * 269.99860 * 10 9 8 12 12 H 1.08001 * 119.99851 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99864 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00581 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46865 * 59.99804 * 15 13 11 17 17 H 1.48493 * 109.46955 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46827 * 300.00172 * 15 13 11 19 19 C 1.46497 * 119.99722 * 8.78679 * 9 8 7 20 20 C 1.53001 * 117.51855 * 167.22153 * 19 9 8 21 21 C 1.52996 * 60.00064 * 107.47841 * 20 19 9 22 22 N 1.31752 * 119.08413 * 270.25473 * 3 2 1 23 23 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46850 * 300.00064 * 1 2 3 25 25 H 1.08998 * 109.46647 * 60.00266 * 1 2 3 26 26 H 1.08995 * 109.46850 * 239.99936 * 2 1 3 27 27 H 1.08998 * 109.46647 * 119.99733 * 2 1 3 28 28 H 1.09005 * 109.47010 * 269.97699 * 6 5 4 29 29 H 1.09000 * 109.47491 * 29.97575 * 6 5 4 30 30 H 1.09001 * 109.47353 * 149.97907 * 6 5 4 31 31 H 1.08002 * 120.83376 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.47337 * 30.00031 * 10 9 8 33 33 H 1.09002 * 109.47012 * 150.00221 * 10 9 8 34 34 H 0.96988 * 120.00407 * 180.02562 * 14 13 11 35 35 H 1.09003 * 115.54947 * 21.51828 * 19 9 8 36 36 H 1.08998 * 117.49718 * 214.97297 * 20 19 9 37 37 H 1.09003 * 117.49410 * 359.97438 * 20 19 9 38 38 H 1.08997 * 117.49977 * 252.50769 * 21 20 19 39 39 H 1.08999 * 117.49677 * 107.49431 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0248 1.1518 5 6 2.6870 3.2740 1.1963 6 6 2.9270 3.9512 2.5209 7 6 2.9240 3.9474 0.0139 8 6 2.6876 3.2784 -1.1886 9 7 2.9095 3.9107 -2.4012 10 6 2.4791 3.2745 -3.6486 11 6 3.5928 2.4107 -4.1822 12 1 4.5276 2.3422 -3.6455 13 6 3.4184 1.7079 -5.3555 14 7 2.2804 1.7916 -6.0093 15 14 4.7987 0.6366 -6.0165 16 1 5.1346 -0.4099 -5.0180 17 1 4.3629 -0.0073 -7.2817 18 1 5.9960 1.4760 -6.2757 19 6 3.5746 5.2156 -2.4359 20 6 4.0599 5.7258 -3.7943 21 6 2.8396 6.3649 -3.1286 22 7 2.2411 2.0263 -1.1514 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0159 4.4569 2.8408 29 1 3.2088 3.2056 3.2645 30 1 3.7299 4.6809 2.4158 31 1 3.2832 4.9659 0.0194 32 1 1.6007 2.6580 -3.4578 33 1 2.2319 4.0424 -4.3817 34 1 2.1576 1.2969 -6.8345 35 1 4.1788 5.4587 -1.5619 36 1 4.9833 6.3045 -3.8139 37 1 3.8846 5.0903 -4.6624 38 1 1.8614 6.1501 -3.5587 39 1 2.9602 7.3642 -2.7103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302464146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:39 Heat of formation + Delta-G solvation = 71.030082 kcal Electronic energy + Delta-G solvation = -19761.132501 eV Core-core repulsion = 16897.569198 eV Total energy + Delta-G solvation = -2863.563303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40646 -37.88962 -34.42213 -34.31429 -32.88043 -31.47042 -30.11769 -28.37233 -26.56127 -24.59573 -23.04111 -22.40914 -21.87776 -20.85349 -19.31520 -17.07924 -16.90213 -16.35177 -14.96853 -14.89113 -14.67632 -14.35697 -14.05911 -13.65661 -13.56897 -13.08349 -12.82945 -12.53979 -12.24260 -12.10304 -11.77186 -11.40287 -11.38121 -11.15591 -10.94555 -10.80082 -10.70920 -10.54856 -10.14848 -10.06800 -9.93760 -9.77243 -9.45178 -8.90544 -8.44691 -8.38810 -7.01368 -6.03085 -4.08373 1.65038 2.03677 3.30893 3.35278 3.38179 3.54626 4.23049 4.41511 4.48083 4.57086 4.82002 5.14574 5.24760 5.29470 5.31982 5.42840 5.47107 5.60713 5.64113 5.67365 5.69856 5.76539 5.90933 5.98511 6.05979 6.13289 6.19513 6.23420 6.39015 6.48111 6.51037 6.71493 6.85791 7.10054 7.39862 7.61097 7.85876 8.13031 8.21578 8.26697 8.93313 9.06129 9.55388 11.02980 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.007702 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.954408 B = 3634.499508 C = 4886.115358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C 0.358 3.642 4 N -0.579 5.579 5 C 0.190 3.810 6 C -0.097 4.097 7 C -0.313 4.313 8 C 0.453 3.547 9 N -0.548 5.548 10 C 0.253 3.747 11 C -0.515 4.515 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.088 3.912 20 C -0.175 4.175 21 C -0.201 4.201 22 N -0.550 5.550 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 5.128 11.404 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C 0.088 3.912 4 N -0.301 5.301 5 C 0.047 3.953 6 C -0.155 4.155 7 C -0.343 4.343 8 C 0.209 3.791 9 N -0.254 5.254 10 C 0.134 3.866 11 C -0.554 4.554 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.204 1.204 19 C -0.019 4.019 20 C -0.212 4.212 21 C -0.240 4.240 22 N -0.273 5.273 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.316 4.260 10.997 11.797 hybrid contribution 1.134 0.326 -0.630 1.337 sum 0.818 4.586 10.367 11.365 Atomic orbital electron populations 1.21639 0.94123 1.01783 1.02206 1.20252 0.96360 0.88934 1.03563 1.22785 0.89340 0.96295 0.82803 1.67990 1.21286 1.10601 1.30223 1.21140 0.89672 0.89670 0.94774 1.20639 1.02112 0.99868 0.92875 1.21864 1.16631 1.03004 0.92758 1.18472 0.86736 0.87811 0.86120 1.46565 1.57320 1.16723 1.04807 1.19333 0.96311 0.92546 0.78394 1.21319 1.00010 1.27184 1.06869 0.92692 1.24881 0.95755 0.96585 0.96667 1.69909 1.23951 1.42554 1.17129 0.86613 0.82188 0.80819 0.78121 1.20253 1.21233 1.20368 1.21388 0.99711 0.83353 0.97419 1.23393 0.97308 1.02858 0.97685 1.23414 0.97904 0.97107 1.05605 1.67971 1.20731 1.08748 1.29854 0.92054 0.92780 0.92180 0.89267 0.89950 0.90558 0.90611 0.90972 0.85120 0.93637 0.95005 0.92719 0.86603 0.88866 0.86193 0.88671 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.90 37.16 0.37 -1.64 16 2 C -0.05 -0.85 6.37 -27.88 -0.18 -1.02 16 3 C 0.36 7.08 6.90 -157.23 -1.08 6.00 16 4 N -0.58 -10.72 10.27 -7.07 -0.07 -10.80 16 5 C 0.19 3.18 6.81 -82.33 -0.56 2.62 16 6 C -0.10 -1.14 10.21 36.00 0.37 -0.77 16 7 C -0.31 -5.58 9.00 -39.11 -0.35 -5.93 16 8 C 0.45 9.72 7.36 -154.77 -1.14 8.58 16 9 N -0.55 -11.88 2.91 -167.44 -0.49 -12.37 16 10 C 0.25 6.45 4.40 -5.19 -0.02 6.43 16 11 C -0.51 -14.22 8.96 -34.44 -0.31 -14.53 16 12 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.09 1.53 5.94 -67.93 -0.40 1.13 16 20 C -0.17 -2.93 9.72 -26.73 -0.26 -3.19 16 21 C -0.20 -3.08 10.03 -26.73 -0.27 -3.35 16 22 N -0.55 -12.48 9.27 -9.96 -0.09 -12.57 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.13 1.96 6.41 -52.49 -0.34 1.63 16 32 H 0.05 1.30 7.55 -51.93 -0.39 0.91 16 33 H 0.03 0.83 6.26 -51.93 -0.32 0.51 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.12 1.75 6.60 -51.93 -0.34 1.41 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.12 2.44 6.29 -51.93 -0.33 2.11 16 38 H 0.09 1.60 7.87 -51.93 -0.41 1.19 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -31.06 326.13 -9.86 -40.92 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.90 Total: 2.50 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.94 Total: -4.02 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.08 Total: -61.01 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.06 -9.86 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302464146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.947 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds