Wall clock time and date at job start Mon Mar 30 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50693 * 109.47109 * 2 1 4 4 N 1.31796 * 119.08622 * 89.99802 * 3 2 1 5 5 C 1.32550 * 121.01186 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.39970 * 180.02562 * 5 4 3 7 7 C 1.38115 * 119.19666 * 0.02562 * 5 4 3 8 8 C 1.39623 * 118.33764 * 359.97438 * 7 5 4 9 9 N 1.38548 * 120.53408 * 179.97438 * 8 7 5 10 10 C 1.46495 * 119.99944 * 188.78556 * 9 8 7 11 11 C 1.50704 * 109.46990 * 269.99860 * 10 9 8 12 12 H 1.08001 * 119.99851 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99864 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00581 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46865 * 59.99804 * 15 13 11 17 17 H 1.48493 * 109.46955 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46827 * 300.00172 * 15 13 11 19 19 C 1.46497 * 119.99722 * 8.78679 * 9 8 7 20 20 C 1.53001 * 117.51855 * 167.22153 * 19 9 8 21 21 C 1.52996 * 60.00064 * 107.47841 * 20 19 9 22 22 N 1.31752 * 119.08413 * 270.25473 * 3 2 1 23 23 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46850 * 300.00064 * 1 2 3 25 25 H 1.08998 * 109.46647 * 60.00266 * 1 2 3 26 26 H 1.08995 * 109.46850 * 239.99936 * 2 1 3 27 27 H 1.08998 * 109.46647 * 119.99733 * 2 1 3 28 28 H 1.09005 * 109.47010 * 269.97699 * 6 5 4 29 29 H 1.09000 * 109.47491 * 29.97575 * 6 5 4 30 30 H 1.09001 * 109.47353 * 149.97907 * 6 5 4 31 31 H 1.08002 * 120.83376 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.47337 * 30.00031 * 10 9 8 33 33 H 1.09002 * 109.47012 * 150.00221 * 10 9 8 34 34 H 0.96988 * 120.00407 * 180.02562 * 14 13 11 35 35 H 1.09003 * 115.54947 * 21.51828 * 19 9 8 36 36 H 1.08998 * 117.49718 * 214.97297 * 20 19 9 37 37 H 1.09003 * 117.49410 * 359.97438 * 20 19 9 38 38 H 1.08997 * 117.49977 * 252.50769 * 21 20 19 39 39 H 1.08999 * 117.49677 * 107.49431 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0248 1.1518 5 6 2.6870 3.2740 1.1963 6 6 2.9270 3.9512 2.5209 7 6 2.9240 3.9474 0.0139 8 6 2.6876 3.2784 -1.1886 9 7 2.9095 3.9107 -2.4012 10 6 2.4791 3.2745 -3.6486 11 6 3.5928 2.4107 -4.1822 12 1 4.5276 2.3422 -3.6455 13 6 3.4184 1.7079 -5.3555 14 7 2.2804 1.7916 -6.0093 15 14 4.7987 0.6366 -6.0165 16 1 5.1346 -0.4099 -5.0180 17 1 4.3629 -0.0073 -7.2817 18 1 5.9960 1.4760 -6.2757 19 6 3.5746 5.2156 -2.4359 20 6 4.0599 5.7258 -3.7943 21 6 2.8396 6.3649 -3.1286 22 7 2.2411 2.0263 -1.1514 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0159 4.4569 2.8408 29 1 3.2088 3.2056 3.2645 30 1 3.7299 4.6809 2.4158 31 1 3.2832 4.9659 0.0194 32 1 1.6007 2.6580 -3.4578 33 1 2.2319 4.0424 -4.3817 34 1 2.1576 1.2969 -6.8345 35 1 4.1788 5.4587 -1.5619 36 1 4.9833 6.3045 -3.8139 37 1 3.8846 5.0903 -4.6624 38 1 1.8614 6.1501 -3.5587 39 1 2.9602 7.3642 -2.7103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302464146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:39 Heat of formation + Delta-G solvation = 53.712889 kcal Electronic energy + Delta-G solvation = -19761.883430 eV Core-core repulsion = 16897.569198 eV Total energy + Delta-G solvation = -2864.314233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86477 -39.35522 -35.90002 -35.61605 -34.91419 -32.96269 -31.60666 -29.86018 -28.21638 -25.97755 -24.95702 -23.79595 -23.17326 -22.19691 -20.83501 -18.73524 -18.44369 -18.29920 -16.67956 -16.34040 -16.21760 -15.77261 -15.46942 -15.17561 -14.85608 -14.60022 -14.09605 -13.92724 -13.70475 -13.34751 -13.28245 -13.04760 -12.85761 -12.63780 -12.60947 -12.44422 -12.25948 -12.12779 -11.97175 -11.50688 -11.42219 -11.26263 -11.18874 -10.62394 -10.32272 -9.91403 -8.66782 -8.12926 -6.32096 0.23748 0.56271 1.34295 1.37088 1.44663 2.02575 2.38278 2.87912 3.09411 3.14960 3.18149 3.46069 3.83035 3.91555 4.00709 4.14516 4.25867 4.33673 4.42166 4.46744 4.54181 4.67193 4.80216 4.83505 4.84906 4.95375 4.98422 5.02296 5.07606 5.15050 5.19757 5.25477 5.30132 5.36367 5.62610 5.71550 5.99691 6.10297 6.42889 6.72258 6.78586 7.35386 7.57351 8.86526 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.007702 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.954408 B = 3634.499508 C = 4886.115358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C 0.342 3.658 4 N -0.581 5.581 5 C 0.186 3.814 6 C -0.091 4.091 7 C -0.308 4.308 8 C 0.423 3.577 9 N -0.563 5.563 10 C 0.279 3.721 11 C -0.520 4.520 12 H 0.041 0.959 13 C 0.014 3.986 14 N -0.927 5.927 15 Si 0.957 3.043 16 H -0.279 1.279 17 H -0.278 1.278 18 H -0.266 1.266 19 C 0.070 3.930 20 C -0.181 4.181 21 C -0.178 4.178 22 N -0.599 5.599 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.003 0.997 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 6.315 13.584 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C 0.073 3.927 4 N -0.303 5.303 5 C 0.044 3.956 6 C -0.149 4.149 7 C -0.336 4.336 8 C 0.181 3.819 9 N -0.270 5.270 10 C 0.158 3.842 11 C -0.559 4.559 12 H 0.060 0.940 13 C -0.185 4.185 14 N -0.568 5.568 15 Si 0.783 3.217 16 H -0.205 1.205 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.035 4.035 20 C -0.219 4.219 21 C -0.216 4.216 22 N -0.324 5.324 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.979 5.470 13.208 14.329 hybrid contribution 0.698 -0.029 -1.222 1.407 sum 1.677 5.441 11.987 13.270 Atomic orbital electron populations 1.21574 0.92740 1.03344 1.01105 1.20368 0.97497 0.87453 1.03824 1.23344 0.89301 0.97457 0.82639 1.68123 1.21265 1.11628 1.29248 1.22050 0.87761 0.89070 0.96766 1.20777 1.03974 1.00279 0.89824 1.22143 1.15911 1.04187 0.91402 1.18941 0.87720 0.88127 0.87140 1.46447 1.58637 1.18293 1.03644 1.18640 0.94218 0.91359 0.79977 1.21453 0.99877 1.27604 1.06920 0.94026 1.25680 0.98050 0.97810 0.96951 1.70021 1.25728 1.43474 1.17546 0.85625 0.79606 0.78997 0.77513 1.20493 1.20297 1.19126 1.21830 1.00762 0.82094 0.98771 1.23339 0.99671 1.03110 0.95814 1.23441 0.96025 0.98307 1.03859 1.67932 1.22413 1.10276 1.31792 0.89159 0.92128 0.94867 0.90879 0.87621 0.88624 0.89900 0.88317 0.81954 0.97891 0.96531 0.92548 0.83455 0.85524 0.90612 0.91004 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.90 71.99 0.71 -3.01 16 2 C -0.05 -1.72 6.37 29.85 0.19 -1.53 16 3 C 0.34 13.72 6.90 138.76 0.96 14.68 16 4 N -0.58 -20.85 10.27 -176.29 -1.81 -22.66 16 5 C 0.19 5.81 6.81 42.42 0.29 6.10 16 6 C -0.09 -1.76 10.21 71.23 0.73 -1.04 16 7 C -0.31 -10.42 9.00 22.57 0.20 -10.22 16 8 C 0.42 18.45 7.36 133.16 0.98 19.43 16 9 N -0.56 -25.06 2.91 -683.67 -1.99 -27.05 16 10 C 0.28 15.10 4.40 85.64 0.38 15.48 16 11 C -0.52 -29.97 8.96 25.60 0.23 -29.74 16 12 H 0.04 2.46 7.81 -2.91 -0.02 2.43 16 13 C 0.01 0.80 5.46 84.65 0.46 1.26 16 14 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 15 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 C 0.07 2.37 5.94 44.99 0.27 2.63 16 20 C -0.18 -5.99 9.72 30.59 0.30 -5.70 16 21 C -0.18 -5.16 10.03 30.59 0.31 -4.85 16 22 N -0.60 -28.30 9.27 -185.44 -1.72 -30.02 16 23 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.16 4.28 6.41 -2.91 -0.02 4.26 16 32 H 0.00 0.19 7.55 -2.39 -0.02 0.17 16 33 H 0.02 0.94 6.26 -2.39 -0.01 0.92 16 34 H 0.27 15.12 8.31 -92.72 -0.77 14.35 16 35 H 0.15 3.97 6.60 -2.39 -0.02 3.96 16 36 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.08 3.22 6.29 -2.39 -0.02 3.20 16 38 H 0.07 2.44 7.87 -2.39 -0.02 2.42 16 39 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -71.79 326.13 3.83 -67.97 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.03 Total: 16.41 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.00 Total: 3.48 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -5.23 Total: -135.36 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.79 3.83 -67.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302464146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.680 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds