Wall clock time and date at job start Mon Mar 30 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47160 * 274.99114 * 3 2 1 5 5 H 1.48496 * 109.47333 * 34.99740 * 3 2 1 6 6 H 1.48504 * 109.46971 * 154.99282 * 3 2 1 7 7 C 1.40247 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99576 * 174.54207 * 7 2 1 9 9 C 1.40128 * 120.00151 * 354.53915 * 7 2 1 10 10 N 1.33026 * 126.65368 * 5.27922 * 9 7 2 11 11 N 1.28559 * 109.35136 * 179.97438 * 10 9 7 12 12 C 1.31308 * 110.20882 * 0.02562 * 11 10 9 13 13 C 1.50710 * 126.07783 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47131 * 265.02590 * 13 12 11 15 15 C 1.53776 * 113.61501 * 173.90084 * 14 13 12 16 16 C 1.53782 * 87.08016 * 220.01573 * 15 14 13 17 17 C 1.53789 * 87.17206 * 25.38883 * 16 15 14 18 18 C 1.52999 * 109.46962 * 145.02357 * 13 12 11 19 19 C 1.53777 * 113.61575 * 283.46377 * 18 13 12 20 20 C 1.53776 * 87.08289 * 220.01923 * 19 18 13 21 21 C 1.53775 * 87.08022 * 25.43197 * 20 19 18 22 22 N 1.35297 * 107.84622 * 0.25971 * 12 11 10 23 23 H 0.96999 * 127.04809 * 179.71177 * 22 12 11 24 24 H 0.96996 * 120.00101 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47017 * 25.02696 * 13 12 11 26 26 H 1.08999 * 112.84723 * 305.09390 * 14 13 12 27 27 H 1.08997 * 113.61712 * 105.46672 * 15 14 13 28 28 H 1.09004 * 113.61452 * 334.56089 * 15 14 13 29 29 H 1.09006 * 113.61394 * 139.97653 * 16 15 14 30 30 H 1.08989 * 113.61611 * 270.79549 * 16 15 14 31 31 H 1.09006 * 113.61324 * 89.16094 * 17 16 15 32 32 H 1.09002 * 113.60934 * 220.05751 * 17 16 15 33 33 H 1.09004 * 112.84765 * 54.76804 * 18 13 12 34 34 H 1.08999 * 113.61810 * 334.56874 * 19 18 13 35 35 H 1.09007 * 113.61782 * 105.47135 * 19 18 13 36 36 H 1.09003 * 113.61801 * 270.88566 * 20 19 18 37 37 H 1.09001 * 113.69508 * 139.99174 * 20 19 18 38 38 H 1.09004 * 113.61703 * 220.01759 * 21 20 19 39 39 H 1.08999 * 113.69153 * 89.12976 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3828 2.1074 -1.3947 5 1 1.4951 2.6199 0.8030 6 1 3.5872 1.4121 0.5919 7 6 2.0081 -1.2146 -0.0005 8 1 3.0844 -1.2166 -0.0895 9 6 1.3123 -2.4254 0.1144 10 7 -0.0084 -2.5838 0.1326 11 7 -0.2860 -3.8336 0.2496 12 6 0.8192 -4.5397 0.3129 13 6 0.9085 -6.0377 0.4527 14 6 1.0670 -6.4035 1.9298 15 6 1.0188 -7.9168 2.1982 16 6 0.1913 -7.5884 3.4522 17 6 -0.2399 -6.2973 2.7364 18 6 2.1166 -6.5520 -0.3327 19 6 1.8872 -6.6029 -1.8524 20 6 2.6494 -7.9385 -1.8435 21 6 2.2158 -8.0860 -0.3756 22 7 1.8636 -3.6830 0.2367 23 1 2.8068 -3.9078 0.2609 24 1 -0.4850 0.8400 0.0004 25 1 -0.0005 -6.4940 0.0609 26 1 1.9129 -5.9032 2.4012 27 1 1.9931 -8.3523 2.4198 28 1 0.4653 -8.4766 1.4442 29 1 -0.6287 -8.2845 3.6289 30 1 0.7968 -7.4133 4.3413 31 1 -1.1381 -6.4135 2.1298 32 1 -0.2802 -5.4274 3.3919 33 1 3.0473 -6.0621 -0.0464 34 1 0.8383 -6.7006 -2.1326 35 1 2.4001 -5.8110 -2.3983 36 1 3.7261 -7.8276 -1.9717 37 1 2.2200 -8.6923 -2.5035 38 1 2.9941 -8.4915 0.2710 39 1 1.2570 -8.5892 -0.2505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306089211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:13 Heat of formation + Delta-G solvation = 87.852934 kcal Electronic energy + Delta-G solvation = -19928.170058 eV Core-core repulsion = 17065.336248 eV Total energy + Delta-G solvation = -2862.833809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83361 -39.34666 -37.52803 -33.56753 -32.02763 -31.05858 -28.20119 -26.16417 -25.25345 -25.00049 -24.24985 -22.06022 -20.76115 -19.70264 -19.36238 -18.61243 -17.33529 -16.00564 -15.45546 -15.38134 -14.86585 -14.52925 -14.21566 -13.49948 -13.40715 -13.01858 -12.54827 -12.32565 -11.91989 -11.87151 -11.46728 -11.38584 -11.24838 -11.07837 -10.96341 -10.76007 -10.36113 -10.25273 -10.21261 -10.08455 -9.96267 -9.56208 -9.43497 -9.26897 -8.86370 -8.17498 -7.43363 -6.52057 -4.46380 3.01073 3.12293 3.15695 3.63630 3.96837 4.50321 4.57195 4.69959 4.80398 4.85526 4.94851 4.98827 5.06623 5.14305 5.24942 5.49282 5.55914 5.64460 5.81117 5.83311 5.88032 5.89769 5.96234 6.04819 6.06619 6.08492 6.12440 6.25113 6.35809 6.42331 6.44511 6.57788 6.70323 6.82107 7.05323 7.27157 7.40514 7.66647 8.33351 8.36737 8.87102 9.16515 10.41713 10.93247 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.005592 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.377930 B = 5005.511650 C = 5695.476515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.081 3.919 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.333 3.667 10 N -0.341 5.341 11 N -0.303 5.303 12 C 0.082 3.918 13 C 0.041 3.959 14 C -0.095 4.095 15 C -0.132 4.132 16 C -0.147 4.147 17 C -0.126 4.126 18 C -0.101 4.101 19 C -0.131 4.131 20 C -0.146 4.146 21 C -0.131 4.131 22 N -0.632 5.632 23 H 0.398 0.602 24 H 0.276 0.724 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -13.291 1.541 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.097 0.903 9 C 0.087 3.913 10 N -0.187 5.187 11 N -0.145 5.145 12 C -0.184 4.184 13 C 0.020 3.980 14 C -0.115 4.115 15 C -0.170 4.170 16 C -0.185 4.185 17 C -0.163 4.163 18 C -0.120 4.120 19 C -0.168 4.168 20 C -0.183 4.183 21 C -0.168 4.168 22 N -0.251 5.251 23 H 0.233 0.767 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.687 -12.811 1.510 13.416 hybrid contribution 2.408 0.551 0.051 2.471 sum 6.095 -12.260 1.561 13.780 Atomic orbital electron populations 1.69967 1.06989 1.28240 1.31422 1.25733 0.94798 1.00432 0.93395 0.86207 0.80129 0.80851 0.78879 1.19619 1.20096 1.18811 1.18095 0.93945 0.87553 1.50454 0.90287 1.21561 0.90091 0.84160 0.95499 1.75589 1.09177 1.04884 1.29082 1.74001 1.23816 1.00728 1.15923 1.23394 0.85626 0.93240 1.16160 1.19191 0.97676 0.87283 0.93870 1.22518 0.98553 0.95330 0.95087 1.23023 0.99787 0.96519 0.97644 1.22862 0.99818 0.98504 0.97273 1.22851 0.97860 0.97002 0.98611 1.22492 0.98349 0.95650 0.95548 1.22872 1.00783 0.96940 0.96253 1.22851 1.00025 0.98121 0.97322 1.23003 1.01433 0.96214 0.96148 1.43846 1.08263 1.07897 1.65063 0.76672 0.91281 0.89795 0.90108 0.92009 0.90016 0.91979 0.90860 0.89831 0.91948 0.90110 0.90042 0.91910 0.90713 0.91880 0.91831 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.91 11.97 55.56 0.67 -20.25 16 2 C 0.08 2.12 5.49 -17.28 -0.09 2.03 16 3 Si 0.92 19.05 29.57 -169.99 -5.03 14.02 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.40 9.46 -38.12 -0.36 -12.76 16 8 H 0.08 1.95 7.86 -52.49 -0.41 1.53 16 9 C 0.33 9.25 7.72 -155.22 -1.20 8.05 16 10 N -0.34 -10.28 10.55 31.22 0.33 -9.95 16 11 N -0.30 -8.22 12.21 32.89 0.40 -7.82 16 12 C 0.08 1.83 6.79 -154.50 -1.05 0.78 16 13 C 0.04 0.68 1.79 -91.77 -0.16 0.51 16 14 C -0.10 -1.41 3.08 -89.72 -0.28 -1.69 16 15 C -0.13 -1.53 5.66 -25.92 -0.15 -1.68 16 16 C -0.15 -1.76 8.08 -25.91 -0.21 -1.97 16 17 C -0.13 -1.92 7.56 -25.83 -0.20 -2.12 16 18 C -0.10 -1.40 2.88 -89.81 -0.26 -1.66 16 19 C -0.13 -1.83 7.54 -25.92 -0.20 -2.02 16 20 C -0.15 -1.61 8.08 -25.92 -0.21 -1.82 16 21 C -0.13 -1.44 5.67 -25.92 -0.15 -1.59 16 22 N -0.63 -14.44 6.05 -9.37 -0.06 -14.50 16 23 H 0.40 7.70 8.21 -40.82 -0.34 7.37 16 24 H 0.28 7.05 8.29 -40.82 -0.34 6.71 16 25 H 0.08 1.43 8.01 -51.93 -0.42 1.01 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.08 0.89 6.50 -51.93 -0.34 0.55 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.84 8.14 -51.94 -0.42 0.41 16 31 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.13 7.43 -51.93 -0.39 0.74 16 34 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 39 H 0.08 0.88 6.49 -51.93 -0.34 0.54 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -31.74 313.45 -9.46 -41.20 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.99 Total: 8.51 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.51 Total: -15.93 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 1.34 Total: -52.52 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.74 -9.46 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306089211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.053 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds