Wall clock time and date at job start Mon Mar 30 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47160 * 274.99114 * 3 2 1 5 5 H 1.48496 * 109.47333 * 34.99740 * 3 2 1 6 6 H 1.48504 * 109.46971 * 154.99282 * 3 2 1 7 7 C 1.40247 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99576 * 174.54207 * 7 2 1 9 9 C 1.40128 * 120.00151 * 354.53915 * 7 2 1 10 10 N 1.33026 * 126.65368 * 5.27922 * 9 7 2 11 11 N 1.28559 * 109.35136 * 179.97438 * 10 9 7 12 12 C 1.31308 * 110.20882 * 0.02562 * 11 10 9 13 13 C 1.50710 * 126.07783 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47131 * 265.02590 * 13 12 11 15 15 C 1.53776 * 113.61501 * 173.90084 * 14 13 12 16 16 C 1.53782 * 87.08016 * 220.01573 * 15 14 13 17 17 C 1.53789 * 87.17206 * 25.38883 * 16 15 14 18 18 C 1.52999 * 109.46962 * 145.02357 * 13 12 11 19 19 C 1.53777 * 113.61575 * 283.46377 * 18 13 12 20 20 C 1.53776 * 87.08289 * 220.01923 * 19 18 13 21 21 C 1.53775 * 87.08022 * 25.43197 * 20 19 18 22 22 N 1.35297 * 107.84622 * 0.25971 * 12 11 10 23 23 H 0.96999 * 127.04809 * 179.71177 * 22 12 11 24 24 H 0.96996 * 120.00101 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47017 * 25.02696 * 13 12 11 26 26 H 1.08999 * 112.84723 * 305.09390 * 14 13 12 27 27 H 1.08997 * 113.61712 * 105.46672 * 15 14 13 28 28 H 1.09004 * 113.61452 * 334.56089 * 15 14 13 29 29 H 1.09006 * 113.61394 * 139.97653 * 16 15 14 30 30 H 1.08989 * 113.61611 * 270.79549 * 16 15 14 31 31 H 1.09006 * 113.61324 * 89.16094 * 17 16 15 32 32 H 1.09002 * 113.60934 * 220.05751 * 17 16 15 33 33 H 1.09004 * 112.84765 * 54.76804 * 18 13 12 34 34 H 1.08999 * 113.61810 * 334.56874 * 19 18 13 35 35 H 1.09007 * 113.61782 * 105.47135 * 19 18 13 36 36 H 1.09003 * 113.61801 * 270.88566 * 20 19 18 37 37 H 1.09001 * 113.69508 * 139.99174 * 20 19 18 38 38 H 1.09004 * 113.61703 * 220.01759 * 21 20 19 39 39 H 1.08999 * 113.69153 * 89.12976 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3828 2.1074 -1.3947 5 1 1.4951 2.6199 0.8030 6 1 3.5872 1.4121 0.5919 7 6 2.0081 -1.2146 -0.0005 8 1 3.0844 -1.2166 -0.0895 9 6 1.3123 -2.4254 0.1144 10 7 -0.0084 -2.5838 0.1326 11 7 -0.2860 -3.8336 0.2496 12 6 0.8192 -4.5397 0.3129 13 6 0.9085 -6.0377 0.4527 14 6 1.0670 -6.4035 1.9298 15 6 1.0188 -7.9168 2.1982 16 6 0.1913 -7.5884 3.4522 17 6 -0.2399 -6.2973 2.7364 18 6 2.1166 -6.5520 -0.3327 19 6 1.8872 -6.6029 -1.8524 20 6 2.6494 -7.9385 -1.8435 21 6 2.2158 -8.0860 -0.3756 22 7 1.8636 -3.6830 0.2367 23 1 2.8068 -3.9078 0.2609 24 1 -0.4850 0.8400 0.0004 25 1 -0.0005 -6.4940 0.0609 26 1 1.9129 -5.9032 2.4012 27 1 1.9931 -8.3523 2.4198 28 1 0.4653 -8.4766 1.4442 29 1 -0.6287 -8.2845 3.6289 30 1 0.7968 -7.4133 4.3413 31 1 -1.1381 -6.4135 2.1298 32 1 -0.2802 -5.4274 3.3919 33 1 3.0473 -6.0621 -0.0464 34 1 0.8383 -6.7006 -2.1326 35 1 2.4001 -5.8110 -2.3983 36 1 3.7261 -7.8276 -1.9717 37 1 2.2200 -8.6923 -2.5035 38 1 2.9941 -8.4915 0.2710 39 1 1.2570 -8.5892 -0.2505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306089211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:12 Heat of formation + Delta-G solvation = 69.524897 kcal Electronic energy + Delta-G solvation = -19928.964821 eV Core-core repulsion = 17065.336248 eV Total energy + Delta-G solvation = -2863.628573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.72251 -40.58395 -38.57889 -35.54194 -33.88495 -32.72442 -30.00963 -27.52775 -26.80675 -26.13931 -25.29057 -23.52908 -22.61311 -21.46116 -20.61891 -19.66853 -19.16308 -17.95538 -16.71198 -16.53475 -16.49095 -15.94251 -15.48569 -15.16639 -15.02295 -14.57317 -13.56272 -13.42126 -13.27739 -13.02629 -12.98213 -12.90057 -12.87130 -12.46217 -12.25527 -12.02599 -11.92556 -11.57585 -11.34436 -11.30038 -11.18649 -11.11623 -11.05161 -10.86848 -10.62320 -10.17264 -9.46146 -8.47997 -6.54922 1.32844 1.41145 1.57703 1.80446 2.21245 2.61369 2.74010 3.42370 3.57543 3.60104 3.78824 3.87222 3.89601 4.05194 4.07082 4.16891 4.33896 4.43934 4.68655 4.75554 4.83761 4.86751 4.91516 4.94209 5.02351 5.02831 5.08943 5.14078 5.15979 5.17269 5.25752 5.35688 5.39593 5.41258 5.52400 5.63316 5.68096 5.73706 6.30251 6.45675 6.84925 7.26902 8.49220 8.90437 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.005592 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.377930 B = 5005.511650 C = 5695.476515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.029 3.971 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.305 3.695 10 N -0.396 5.396 11 N -0.360 5.360 12 C 0.122 3.878 13 C 0.043 3.957 14 C -0.100 4.100 15 C -0.111 4.111 16 C -0.133 4.133 17 C -0.143 4.143 18 C -0.105 4.105 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.114 4.114 22 N -0.622 5.622 23 H 0.415 0.585 24 H 0.281 0.719 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -15.499 1.950 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.528 4.528 8 H 0.115 0.885 9 C 0.056 3.944 10 N -0.241 5.241 11 N -0.199 5.199 12 C -0.148 4.148 13 C 0.022 3.978 14 C -0.119 4.119 15 C -0.148 4.148 16 C -0.170 4.170 17 C -0.180 4.180 18 C -0.124 4.124 19 C -0.184 4.184 20 C -0.168 4.168 21 C -0.151 4.151 22 N -0.241 5.241 23 H 0.253 0.747 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.169 -15.051 1.918 16.379 hybrid contribution 1.601 1.125 -0.083 1.959 sum 7.770 -13.926 1.835 16.053 Atomic orbital electron populations 1.70123 1.09306 1.29658 1.32921 1.26917 0.95586 1.04557 0.91960 0.84904 0.78773 0.74884 0.79229 1.18697 1.19669 1.17309 1.18614 0.94918 0.88015 1.51215 0.88543 1.21927 0.90092 0.85902 0.96445 1.75460 1.10926 1.06511 1.31222 1.73903 1.26010 1.00522 1.19498 1.24513 0.84325 0.95520 1.10408 1.19467 0.99211 0.83009 0.96140 1.22537 0.97794 0.98628 0.92980 1.22957 1.01197 0.93387 0.97271 1.22815 1.00370 0.96198 0.97650 1.22926 0.97924 0.98138 0.99061 1.22551 0.96702 0.98503 0.94680 1.22946 1.00433 0.98715 0.96258 1.22798 1.00292 0.96024 0.97734 1.22963 1.02739 0.93068 0.96377 1.43793 1.09333 1.06758 1.64244 0.74660 0.90874 0.90168 0.90844 0.89435 0.88655 0.90281 0.89964 0.91101 0.94967 0.89926 0.91373 0.93845 0.89567 0.90431 0.89488 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.77 11.97 21.88 0.26 -46.50 16 2 C 0.03 1.58 5.49 85.35 0.47 2.05 16 3 Si 1.00 39.40 29.57 68.60 2.03 41.43 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.49 -26.92 9.46 23.22 0.22 -26.70 16 8 H 0.10 4.77 7.86 -2.91 -0.02 4.74 16 9 C 0.31 17.64 7.72 133.51 1.03 18.67 16 10 N -0.40 -25.25 10.55 -55.14 -0.58 -25.83 16 11 N -0.36 -20.59 12.21 -49.87 -0.61 -21.20 16 12 C 0.12 5.59 6.79 137.81 0.94 6.52 16 13 C 0.04 1.39 1.79 -11.54 -0.02 1.37 16 14 C -0.10 -2.82 3.08 -10.21 -0.03 -2.85 16 15 C -0.11 -2.13 5.66 31.12 0.18 -1.95 16 16 C -0.13 -2.82 8.08 31.12 0.25 -2.57 16 17 C -0.14 -4.37 7.56 31.18 0.24 -4.14 16 18 C -0.11 -2.70 2.88 -10.27 -0.03 -2.73 16 19 C -0.15 -3.92 7.54 31.12 0.23 -3.69 16 20 C -0.13 -2.45 8.08 31.12 0.25 -2.20 16 21 C -0.11 -2.03 5.67 31.12 0.18 -1.85 16 22 N -0.62 -29.10 6.05 -183.57 -1.11 -30.21 16 23 H 0.42 16.08 8.21 -92.71 -0.76 15.32 16 24 H 0.28 14.99 8.29 -92.71 -0.77 14.22 16 25 H 0.08 2.71 8.01 -2.39 -0.02 2.69 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 1.33 8.05 -2.39 -0.02 1.31 16 28 H 0.10 1.63 6.50 -2.38 -0.02 1.61 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.32 8.06 -2.38 -0.02 2.30 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 2.11 7.43 -2.39 -0.02 2.10 16 34 H 0.07 1.99 8.05 -2.39 -0.02 1.97 16 35 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.23 8.05 -2.38 -0.02 1.21 16 39 H 0.09 1.52 6.49 -2.39 -0.02 1.51 16 Total: -1.00 -74.55 313.45 4.18 -70.38 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.29 Total: 32.00 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 3.90 Total: -20.05 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -2.04 Total: -123.75 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -74.55 4.18 -70.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306089211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.901 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds