Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47291 * 2 1 4 4 C 1.46896 * 111.00256 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47251 * 34.99594 * 4 3 2 6 6 C 1.53008 * 109.47040 * 274.99857 * 4 3 2 7 7 C 1.50698 * 109.47557 * 155.00050 * 4 3 2 8 8 C 1.32668 * 120.00355 * 245.43481 * 7 4 3 9 9 C 1.47680 * 119.99313 * 8.20098 * 8 7 4 10 10 C 1.39505 * 120.18574 * 43.43007 * 9 8 7 11 11 C 1.37950 * 119.92087 * 179.74143 * 10 9 8 12 12 C 1.38481 * 120.30035 * 0.55815 * 11 10 9 13 13 C 1.38114 * 120.36512 * 359.69577 * 12 11 10 14 14 C 1.38735 * 120.07437 * 0.02562 * 13 12 11 15 15 O 1.35638 * 120.15345 * 179.97438 * 14 13 12 16 16 C 1.34819 * 116.99646 * 354.35723 * 15 14 13 17 17 H 1.07993 * 120.00046 * 5.07017 * 16 15 14 18 18 C 1.38647 * 119.99774 * 185.06351 * 16 15 14 19 19 N 1.31562 * 120.00245 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46797 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46634 * 120.00190 * 20 18 16 23 23 H 1.48495 * 109.47202 * 240.00073 * 20 18 16 24 24 H 1.09002 * 109.46676 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47355 * 300.00019 * 1 2 3 26 26 H 1.09004 * 109.46683 * 60.00553 * 1 2 3 27 27 H 1.09002 * 109.47800 * 240.00132 * 2 1 3 28 28 H 1.09004 * 109.47213 * 119.99998 * 2 1 3 29 29 H 1.00897 * 110.99694 * 303.94885 * 3 2 1 30 30 H 1.09002 * 109.46883 * 299.99962 * 6 4 3 31 31 H 1.08998 * 109.46845 * 59.99862 * 6 4 3 32 32 H 1.08995 * 109.47317 * 180.02562 * 6 4 3 33 33 H 1.08004 * 119.99949 * 65.70003 * 7 4 3 34 34 H 1.07992 * 120.00211 * 188.20484 * 8 7 4 35 35 H 1.07997 * 120.03117 * 359.97438 * 10 9 8 36 36 H 1.08009 * 119.85042 * 180.25476 * 11 10 9 37 37 H 1.07994 * 119.81651 * 179.71741 * 12 11 10 38 38 H 1.08003 * 119.96959 * 180.02562 * 13 12 11 39 39 H 0.96995 * 120.00253 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5923 -0.5885 6 6 4.0007 1.3124 1.4379 7 6 3.9563 2.7247 -0.5998 8 6 4.6285 2.7234 -1.7436 9 6 4.7620 1.4743 -2.5200 10 6 3.6613 0.6348 -2.6929 11 6 3.7909 -0.5280 -3.4237 12 6 5.0124 -0.8726 -3.9776 13 6 6.1114 -0.0531 -3.8096 14 6 5.9970 1.1228 -3.0823 15 8 7.0753 1.9285 -2.9158 16 6 8.2563 1.4745 -3.3814 17 1 8.2986 0.5471 -3.9332 18 6 9.4164 2.1982 -3.1519 19 7 9.3649 3.3277 -2.4793 20 14 11.0526 1.5694 -3.7976 21 1 10.8413 0.2872 -4.5163 22 1 11.6339 2.5688 -4.7296 23 1 11.9831 1.3527 -2.6608 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6443 1.9012 -0.7814 30 1 3.6148 2.1443 2.0270 31 1 3.6621 0.3717 1.8722 32 1 5.0903 1.3419 1.4385 33 1 3.7482 3.6576 -0.0968 34 1 5.0781 3.6357 -2.1067 35 1 2.7081 0.8970 -2.2583 36 1 2.9369 -1.1750 -3.5604 37 1 5.1061 -1.7871 -4.5445 38 1 7.0609 -0.3279 -4.2447 39 1 10.1764 3.8342 -2.3190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310047838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = 10.285628 kcal Electronic energy + Delta-G solvation = -19522.252788 eV Core-core repulsion = 16623.762657 eV Total energy + Delta-G solvation = -2898.490131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.36622 -37.63105 -36.18356 -33.85539 -32.36305 -31.19107 -29.23731 -28.31306 -27.84981 -25.40485 -23.31743 -22.06488 -21.40972 -20.88239 -18.64871 -18.05437 -16.84093 -15.89106 -15.26203 -14.82904 -14.68192 -14.59285 -14.00714 -13.86897 -13.57363 -13.41231 -12.96597 -12.58600 -12.29577 -12.21467 -11.91339 -11.74796 -11.54201 -11.34970 -11.29071 -11.00914 -10.95402 -10.79357 -10.72099 -10.47123 -10.14303 -9.41609 -9.14964 -8.90208 -8.22637 -7.83747 -7.15772 -6.51744 -4.10010 1.77985 2.29211 2.95051 3.08593 3.10105 3.15518 3.90839 4.41099 4.54292 5.01479 5.07564 5.17291 5.26819 5.29751 5.45164 5.54098 5.54645 5.69001 5.76392 5.84330 5.86248 5.96987 6.01087 6.11559 6.12812 6.19674 6.23539 6.37223 6.57951 6.60695 6.79269 6.94281 6.97253 7.11550 7.26847 7.29855 7.32987 7.43389 7.61540 7.74718 7.92796 8.93658 9.62330 10.65648 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.005264 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.440271 B = 5317.447921 C = 5983.183362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 N -0.684 5.684 4 C 0.107 3.893 5 H 0.066 0.934 6 C -0.133 4.133 7 C -0.191 4.191 8 C -0.056 4.056 9 C -0.146 4.146 10 C -0.063 4.063 11 C -0.218 4.218 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.164 3.836 15 O -0.166 6.166 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.042 3.958 19 N -0.857 5.857 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.338 0.662 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -5.358 2.312 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.316 5.316 4 C -0.001 4.001 5 H 0.084 0.916 6 C -0.191 4.191 7 C -0.209 4.209 8 C -0.075 4.075 9 C -0.147 4.147 10 C -0.081 4.081 11 C -0.237 4.237 12 C -0.088 4.088 13 C -0.253 4.253 14 C 0.110 3.890 15 O -0.069 6.069 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.491 5.491 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.853 -4.886 3.192 12.323 hybrid contribution 1.114 -0.617 -1.298 1.818 sum -9.740 -5.503 1.894 11.346 Atomic orbital electron populations 1.21762 0.95395 1.01329 1.02138 1.21993 0.95136 0.90315 1.00723 1.60713 1.08230 1.13031 1.49624 1.20771 0.86638 0.96266 0.96473 0.91593 1.21726 1.00431 1.01154 0.95806 1.22981 1.03429 0.97605 0.96899 1.21604 0.95378 0.96441 0.94088 1.18152 0.92138 0.98104 1.06291 1.20810 0.96395 0.93755 0.97138 1.20499 0.97506 0.99439 1.06283 1.20804 0.92588 0.97888 0.97490 1.21143 0.99974 0.97449 1.06770 1.19433 0.88256 0.89434 0.91917 1.83938 1.14083 1.39565 1.69289 1.21400 0.81809 1.08650 1.35180 0.88982 1.25291 0.98933 0.95609 0.96502 1.70045 1.29283 1.13150 1.36664 0.85650 0.80335 0.78855 0.78621 1.19077 1.20075 1.20061 0.92536 0.92073 0.92965 0.94890 0.91310 0.84338 0.92471 0.93387 0.92421 0.87025 0.86367 0.87324 0.87679 0.87472 0.85406 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.17 37.16 0.38 -1.07 16 2 C 0.05 0.57 5.93 -3.82 -0.02 0.55 16 3 N -0.68 -9.13 5.91 -107.95 -0.64 -9.77 16 4 C 0.11 1.67 1.86 -68.86 -0.13 1.54 16 5 H 0.07 1.17 4.65 -51.93 -0.24 0.92 16 6 C -0.13 -1.99 9.40 37.16 0.35 -1.64 16 7 C -0.19 -3.22 8.69 -36.20 -0.31 -3.54 16 8 C -0.06 -1.10 9.31 -37.62 -0.35 -1.45 16 9 C -0.15 -3.04 4.99 -104.84 -0.52 -3.56 16 10 C -0.06 -1.12 7.11 -39.22 -0.28 -1.40 16 11 C -0.22 -3.76 10.03 -39.60 -0.40 -4.16 16 12 C -0.07 -1.27 10.03 -39.54 -0.40 -1.66 16 13 C -0.23 -5.05 9.16 -39.44 -0.36 -5.41 16 14 C 0.16 3.93 6.66 -38.67 -0.26 3.67 16 15 O -0.17 -4.63 9.21 0.43 0.00 -4.62 16 16 C -0.39 -10.81 9.49 30.88 0.29 -10.52 16 17 H 0.09 2.35 5.21 -52.49 -0.27 2.07 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 19 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 20 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.42 7.03 -51.93 -0.36 0.05 16 28 H 0.07 0.83 7.44 -51.93 -0.39 0.45 16 29 H 0.34 4.38 7.56 -39.29 -0.30 4.08 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 35 H 0.11 1.70 4.73 -52.49 -0.25 1.46 16 36 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -28.78 318.94 -7.63 -36.41 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.43 Total: 9.49 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.11 Total: -27.63 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.12 Total: -33.63 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: 0.00 Total: -4.62 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.78 -7.63 -36.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310047838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.696 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds