Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47291 * 2 1 4 4 C 1.46896 * 111.00256 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47251 * 34.99594 * 4 3 2 6 6 C 1.53008 * 109.47040 * 274.99857 * 4 3 2 7 7 C 1.50698 * 109.47557 * 155.00050 * 4 3 2 8 8 C 1.32668 * 120.00355 * 245.43481 * 7 4 3 9 9 C 1.47680 * 119.99313 * 8.20098 * 8 7 4 10 10 C 1.39505 * 120.18574 * 43.43007 * 9 8 7 11 11 C 1.37950 * 119.92087 * 179.74143 * 10 9 8 12 12 C 1.38481 * 120.30035 * 0.55815 * 11 10 9 13 13 C 1.38114 * 120.36512 * 359.69577 * 12 11 10 14 14 C 1.38735 * 120.07437 * 0.02562 * 13 12 11 15 15 O 1.35638 * 120.15345 * 179.97438 * 14 13 12 16 16 C 1.34819 * 116.99646 * 354.35723 * 15 14 13 17 17 H 1.07993 * 120.00046 * 5.07017 * 16 15 14 18 18 C 1.38647 * 119.99774 * 185.06351 * 16 15 14 19 19 N 1.31562 * 120.00245 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46797 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46634 * 120.00190 * 20 18 16 23 23 H 1.48495 * 109.47202 * 240.00073 * 20 18 16 24 24 H 1.09002 * 109.46676 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47355 * 300.00019 * 1 2 3 26 26 H 1.09004 * 109.46683 * 60.00553 * 1 2 3 27 27 H 1.09002 * 109.47800 * 240.00132 * 2 1 3 28 28 H 1.09004 * 109.47213 * 119.99998 * 2 1 3 29 29 H 1.00897 * 110.99694 * 303.94885 * 3 2 1 30 30 H 1.09002 * 109.46883 * 299.99962 * 6 4 3 31 31 H 1.08998 * 109.46845 * 59.99862 * 6 4 3 32 32 H 1.08995 * 109.47317 * 180.02562 * 6 4 3 33 33 H 1.08004 * 119.99949 * 65.70003 * 7 4 3 34 34 H 1.07992 * 120.00211 * 188.20484 * 8 7 4 35 35 H 1.07997 * 120.03117 * 359.97438 * 10 9 8 36 36 H 1.08009 * 119.85042 * 180.25476 * 11 10 9 37 37 H 1.07994 * 119.81651 * 179.71741 * 12 11 10 38 38 H 1.08003 * 119.96959 * 180.02562 * 13 12 11 39 39 H 0.96995 * 120.00253 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5923 -0.5885 6 6 4.0007 1.3124 1.4379 7 6 3.9563 2.7247 -0.5998 8 6 4.6285 2.7234 -1.7436 9 6 4.7620 1.4743 -2.5200 10 6 3.6613 0.6348 -2.6929 11 6 3.7909 -0.5280 -3.4237 12 6 5.0124 -0.8726 -3.9776 13 6 6.1114 -0.0531 -3.8096 14 6 5.9970 1.1228 -3.0823 15 8 7.0753 1.9285 -2.9158 16 6 8.2563 1.4745 -3.3814 17 1 8.2986 0.5471 -3.9332 18 6 9.4164 2.1982 -3.1519 19 7 9.3649 3.3277 -2.4793 20 14 11.0526 1.5694 -3.7976 21 1 10.8413 0.2872 -4.5163 22 1 11.6339 2.5688 -4.7296 23 1 11.9831 1.3527 -2.6608 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6443 1.9012 -0.7814 30 1 3.6148 2.1443 2.0270 31 1 3.6621 0.3717 1.8722 32 1 5.0903 1.3419 1.4385 33 1 3.7482 3.6576 -0.0968 34 1 5.0781 3.6357 -2.1067 35 1 2.7081 0.8970 -2.2583 36 1 2.9369 -1.1750 -3.5604 37 1 5.1061 -1.7871 -4.5445 38 1 7.0609 -0.3279 -4.2447 39 1 10.1764 3.8342 -2.3190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310047838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = -7.012025 kcal Electronic energy + Delta-G solvation = -19523.002870 eV Core-core repulsion = 16623.762657 eV Total energy + Delta-G solvation = -2899.240214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00080 -39.09009 -37.71310 -35.13703 -34.30387 -32.45855 -30.80680 -29.75679 -29.00495 -27.34676 -24.66856 -23.28410 -23.00832 -22.16497 -20.15589 -19.86614 -18.50644 -17.25171 -16.64658 -16.33717 -16.20398 -16.06000 -15.55121 -15.42437 -14.96834 -14.78810 -14.35329 -14.23018 -13.60441 -13.49798 -13.33095 -13.11717 -13.04245 -12.68112 -12.45533 -12.37876 -12.30287 -12.25007 -12.11812 -11.92656 -11.56469 -11.14722 -10.83900 -10.63518 -9.50615 -9.24002 -8.82969 -8.48883 -6.16005 0.24273 0.68688 1.33712 1.41542 1.44386 1.51556 2.15356 2.82026 3.14639 3.32586 3.45509 3.84290 4.02125 4.07943 4.22266 4.27224 4.32300 4.47551 4.54178 4.59089 4.59863 4.70409 4.78622 4.86727 4.98468 5.01810 5.09302 5.14304 5.17111 5.25180 5.32998 5.38466 5.49179 5.54486 5.70625 5.75999 5.82301 6.01678 6.14801 6.19168 6.51795 6.95786 7.76279 8.73809 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.005264 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.440271 B = 5317.447921 C = 5983.183362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.678 5.678 4 C 0.111 3.889 5 H 0.048 0.952 6 C -0.131 4.131 7 C -0.157 4.157 8 C -0.095 4.095 9 C -0.148 4.148 10 C -0.060 4.060 11 C -0.195 4.195 12 C -0.068 4.068 13 C -0.248 4.248 14 C 0.121 3.879 15 O -0.218 6.218 16 C -0.416 4.416 17 H 0.100 0.900 18 C -0.019 4.019 19 N -0.915 5.915 20 Si 1.016 2.984 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.269 1.269 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.342 0.658 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.119 0.881 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.423 -7.733 2.296 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.310 5.310 4 C 0.002 3.998 5 H 0.066 0.934 6 C -0.189 4.189 7 C -0.176 4.176 8 C -0.114 4.114 9 C -0.149 4.149 10 C -0.078 4.078 11 C -0.213 4.213 12 C -0.086 4.086 13 C -0.267 4.267 14 C 0.070 3.930 15 O -0.124 6.124 16 C -0.492 4.492 17 H 0.118 0.882 18 C -0.217 4.217 19 N -0.553 5.553 20 Si 0.836 3.164 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.137 0.863 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.326 -7.298 3.163 15.519 hybrid contribution 1.486 0.001 -1.224 1.926 sum -11.839 -7.296 1.939 14.041 Atomic orbital electron populations 1.21717 0.93449 1.02448 1.02386 1.22083 0.96685 0.89015 1.00552 1.60700 1.06178 1.14352 1.49813 1.20670 0.88285 0.94405 0.96432 0.93418 1.21695 0.99331 1.02446 0.95447 1.23254 1.00223 0.99136 0.94974 1.21482 0.98152 0.95663 0.96102 1.18507 0.91977 0.98751 1.05692 1.21122 0.96296 0.93530 0.96818 1.21072 0.98312 0.98807 1.03118 1.21214 0.91731 0.98452 0.97241 1.21287 1.01092 0.97495 1.06858 1.20045 0.88515 0.90653 0.93800 1.83913 1.15002 1.41592 1.71863 1.21860 0.82551 1.09196 1.35559 0.88241 1.26533 1.02778 0.95698 0.96682 1.70188 1.30410 1.15162 1.39542 0.84560 0.74901 0.78777 0.78174 1.17530 1.19320 1.19387 0.91012 0.92128 0.92441 0.95145 0.91420 0.83867 0.91491 0.91870 0.94179 0.85466 0.88803 0.84753 0.83261 0.83700 0.86318 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.17 71.98 0.73 -1.50 16 2 C 0.05 0.93 5.93 86.30 0.51 1.44 16 3 N -0.68 -16.12 5.91 -495.43 -2.93 -19.05 16 4 C 0.11 3.28 1.86 44.17 0.08 3.37 16 5 H 0.05 1.61 4.65 -2.39 -0.01 1.60 16 6 C -0.13 -3.71 9.40 71.98 0.68 -3.04 16 7 C -0.16 -5.27 8.69 24.52 0.21 -5.06 16 8 C -0.09 -3.88 9.31 23.60 0.22 -3.66 16 9 C -0.15 -6.28 4.99 -20.01 -0.10 -6.38 16 10 C -0.06 -2.00 7.11 22.51 0.16 -1.84 16 11 C -0.19 -5.92 10.03 22.26 0.22 -5.70 16 12 C -0.07 -2.31 10.03 22.30 0.22 -2.09 16 13 C -0.25 -10.80 9.16 22.36 0.20 -10.60 16 14 C 0.12 6.04 6.66 22.86 0.15 6.19 16 15 O -0.22 -13.01 9.21 -21.39 -0.20 -13.20 16 16 C -0.42 -24.13 9.49 67.92 0.64 -23.49 16 17 H 0.10 5.33 5.21 -2.91 -0.02 5.32 16 18 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 19 N -0.92 -55.87 13.67 21.61 0.30 -55.58 16 20 Si 1.02 42.79 29.55 68.60 2.03 44.82 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.03 0.65 7.03 -2.39 -0.02 0.63 16 28 H 0.07 1.41 7.44 -2.39 -0.02 1.40 16 29 H 0.34 7.78 7.56 -89.70 -0.68 7.10 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.59 7.45 -2.39 -0.02 1.57 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.09 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.13 3.77 4.73 -2.91 -0.01 3.75 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -67.50 318.94 3.98 -63.53 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.37 Total: 32.44 kcal Atomic # 6 Polarization: -57.36 SS G_CDS: 4.41 Total: -52.95 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.63 Total: -74.63 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.20 Total: -13.20 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.50 3.98 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310047838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.513 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds