Wall clock time and date at job start Mon Mar 30 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47295 * 2 1 4 4 C 1.46907 * 111.00177 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46836 * 325.00168 * 4 3 2 6 6 C 1.53003 * 109.46906 * 85.00003 * 4 3 2 7 7 C 1.50697 * 109.47099 * 204.99962 * 4 3 2 8 8 C 1.32668 * 120.00036 * 122.34892 * 7 4 3 9 9 C 1.47680 * 119.99874 * 6.93309 * 8 7 4 10 10 C 1.39504 * 120.18437 * 42.27700 * 9 8 7 11 11 C 1.37948 * 119.92031 * 179.97438 * 10 9 8 12 12 C 1.38470 * 120.30389 * 0.02562 * 11 10 9 13 13 C 1.38121 * 120.36388 * 359.96380 * 12 11 10 14 14 C 1.38733 * 120.07210 * 0.03692 * 13 12 11 15 15 O 1.35643 * 120.14995 * 180.25207 * 14 13 12 16 16 C 1.34811 * 116.99766 * 355.78053 * 15 14 13 17 17 H 1.07997 * 120.00038 * 5.02906 * 16 15 14 18 18 C 1.38650 * 119.99680 * 185.02136 * 16 15 14 19 19 N 1.31560 * 120.00010 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99652 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47164 * 90.00496 * 20 18 16 22 22 H 1.48505 * 109.46573 * 210.00121 * 20 18 16 23 23 H 1.48491 * 109.47236 * 330.00004 * 20 18 16 24 24 H 1.09008 * 109.47089 * 60.00085 * 1 2 3 25 25 H 1.09004 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46832 * 300.00266 * 1 2 3 27 27 H 1.09002 * 109.47329 * 239.99866 * 2 1 3 28 28 H 1.08999 * 109.47224 * 120.00172 * 2 1 3 29 29 H 1.00899 * 111.00390 * 56.04143 * 3 2 1 30 30 H 1.09001 * 109.46731 * 299.99694 * 6 4 3 31 31 H 1.08994 * 109.47238 * 60.00411 * 6 4 3 32 32 H 1.08998 * 109.46631 * 180.02562 * 6 4 3 33 33 H 1.08007 * 120.00293 * 302.35062 * 7 4 3 34 34 H 1.08001 * 119.99862 * 186.92197 * 8 7 4 35 35 H 1.08004 * 120.03699 * 359.95546 * 10 9 8 36 36 H 1.08002 * 119.84770 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.82029 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.96576 * 180.02562 * 13 12 11 39 39 H 0.97005 * 119.99619 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8741 0.5922 0.5885 6 6 4.0007 1.3122 -1.4379 7 6 3.9563 2.7246 0.5998 8 6 4.7579 2.7167 1.6569 9 6 5.3147 1.4416 2.1518 10 6 5.7934 0.4890 1.2520 11 6 6.3128 -0.7000 1.7204 12 6 6.3612 -0.9536 3.0808 13 6 5.8909 -0.0190 3.9824 14 6 5.3653 1.1819 3.5283 15 8 4.9076 2.1031 4.4126 16 6 4.9108 1.7554 5.7151 17 1 5.3419 0.8138 6.0216 18 6 4.3609 2.6068 6.6611 19 7 3.8355 3.7537 6.2876 20 14 4.3659 2.1254 8.4661 21 1 5.6107 2.6205 9.1069 22 1 3.1882 2.7267 9.1419 23 1 4.3028 0.6466 8.5841 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6442 1.9013 0.7813 30 1 3.6622 0.3715 -1.8721 31 1 3.6149 2.1441 -2.0270 32 1 5.0904 1.3409 -1.4383 33 1 3.6391 3.6632 0.1697 34 1 5.0035 3.6429 2.1553 35 1 5.7570 0.6822 0.1900 36 1 6.6834 -1.4365 1.0227 37 1 6.7691 -1.8873 3.4388 38 1 5.9321 -0.2233 5.0421 39 1 3.4504 4.3492 6.9495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310047839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:36 Heat of formation + Delta-G solvation = 10.400907 kcal Electronic energy + Delta-G solvation = -19489.727178 eV Core-core repulsion = 16591.242046 eV Total energy + Delta-G solvation = -2898.485132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.33326 -37.54099 -36.23608 -33.87158 -32.37762 -31.07494 -29.26306 -28.24632 -27.91966 -25.40436 -23.27753 -21.99410 -21.39166 -20.87876 -18.65126 -18.04076 -16.82861 -15.84322 -15.22029 -14.83996 -14.59691 -14.41065 -14.02108 -13.88871 -13.72256 -13.39226 -12.79828 -12.64930 -12.31905 -12.12317 -12.02000 -11.74028 -11.48478 -11.38322 -11.28316 -10.99563 -10.94598 -10.75400 -10.70340 -10.47444 -10.12211 -9.39723 -9.11332 -8.88234 -8.27448 -7.73438 -7.14068 -6.51987 -4.10177 1.78916 2.31490 2.97163 3.08678 3.09604 3.14252 3.90735 4.47693 4.56809 5.02943 5.12896 5.17779 5.31209 5.35690 5.49452 5.55942 5.59175 5.70094 5.77048 5.80497 5.90440 5.97962 6.04537 6.11861 6.12958 6.19937 6.24384 6.33302 6.55242 6.65207 6.80899 6.95346 6.99144 7.12561 7.29620 7.33143 7.34966 7.46795 7.68893 7.76994 7.92752 8.93474 9.62428 10.65370 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.005834 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.391578 B = 4797.920792 C = 5384.706828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.102 3.898 5 H 0.070 0.930 6 C -0.134 4.134 7 C -0.193 4.193 8 C -0.055 4.055 9 C -0.148 4.148 10 C -0.064 4.064 11 C -0.219 4.219 12 C -0.070 4.070 13 C -0.236 4.236 14 C 0.164 3.836 15 O -0.167 6.167 16 C -0.395 4.395 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.858 5.858 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.343 0.657 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -6.124 -9.393 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.318 5.318 4 C -0.006 4.006 5 H 0.087 0.913 6 C -0.192 4.192 7 C -0.212 4.212 8 C -0.074 4.074 9 C -0.149 4.149 10 C -0.082 4.082 11 C -0.238 4.238 12 C -0.088 4.088 13 C -0.255 4.255 14 C 0.109 3.891 15 O -0.069 6.069 16 C -0.471 4.471 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.492 5.492 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.162 0.838 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.176 -5.622 -9.981 11.516 hybrid contribution 0.242 -0.532 1.959 2.044 sum -0.934 -6.154 -8.023 10.154 Atomic orbital electron populations 1.21760 0.95346 1.01314 1.02240 1.21921 0.95261 0.90180 1.00279 1.60624 1.08062 1.13050 1.50074 1.20891 0.87156 0.96493 0.96090 0.91288 1.21775 0.99806 1.01446 0.96202 1.22970 1.01668 0.97681 0.98865 1.21594 0.95519 0.96381 0.93924 1.18163 1.09876 0.96791 0.90114 1.20981 0.96310 0.92806 0.98082 1.20531 1.09390 0.98699 0.95188 1.20819 0.97147 0.97682 0.93153 1.21136 1.08170 0.95802 1.00423 1.19451 0.91628 0.88585 0.89451 1.83938 1.70669 1.35775 1.16549 1.21346 1.40406 1.06122 0.79203 0.89058 1.25287 0.95721 0.95188 1.00142 1.70038 1.35339 1.08880 1.34953 0.85719 0.78339 0.78956 0.80486 1.19799 1.20179 1.19187 0.92118 0.92550 0.92770 0.91469 0.95274 0.83833 0.93319 0.92301 0.92668 0.87001 0.86393 0.86329 0.87558 0.87512 0.85465 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.17 37.16 0.38 -1.33 16 2 C 0.05 0.71 6.20 -3.83 -0.02 0.69 16 3 N -0.69 -10.23 6.30 -107.95 -0.68 -10.91 16 4 C 0.10 1.58 2.05 -68.86 -0.14 1.44 16 5 H 0.07 1.20 4.30 -51.93 -0.22 0.97 16 6 C -0.13 -1.78 8.99 37.16 0.33 -1.44 16 7 C -0.19 -3.26 8.70 -36.20 -0.32 -3.58 16 8 C -0.06 -1.09 9.32 -37.62 -0.35 -1.44 16 9 C -0.15 -3.10 5.10 -104.85 -0.53 -3.63 16 10 C -0.06 -1.15 7.28 -39.22 -0.29 -1.44 16 11 C -0.22 -3.79 10.03 -39.60 -0.40 -4.19 16 12 C -0.07 -1.28 10.03 -39.54 -0.40 -1.67 16 13 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 14 C 0.16 3.91 6.66 -38.67 -0.26 3.66 16 15 O -0.17 -4.64 9.21 0.43 0.00 -4.63 16 16 C -0.39 -10.83 9.48 30.88 0.29 -10.53 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 19 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 20 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.85 7.43 -51.93 -0.39 0.46 16 28 H 0.03 0.43 8.06 -51.93 -0.42 0.02 16 29 H 0.34 5.40 8.35 -39.29 -0.33 5.07 16 30 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.69 6.73 -51.93 -0.35 0.34 16 33 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 35 H 0.12 1.87 5.02 -52.48 -0.26 1.61 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.75 5.62 -52.48 -0.30 2.45 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 320.00 15.07 4.82 4.82 Total: -1.00 -28.86 320.00 -7.71 -36.57 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.44 Total: 10.74 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.15 Total: -27.91 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.08 Total: -34.77 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.00 Total: -4.63 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.86 -7.71 -36.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310047839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.976 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds