Wall clock time and date at job start Mon Mar 30 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47295 * 2 1 4 4 C 1.46907 * 111.00177 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46836 * 325.00168 * 4 3 2 6 6 C 1.53003 * 109.46906 * 85.00003 * 4 3 2 7 7 C 1.50697 * 109.47099 * 204.99962 * 4 3 2 8 8 C 1.32668 * 120.00036 * 122.34892 * 7 4 3 9 9 C 1.47680 * 119.99874 * 6.93309 * 8 7 4 10 10 C 1.39504 * 120.18437 * 42.27700 * 9 8 7 11 11 C 1.37948 * 119.92031 * 179.97438 * 10 9 8 12 12 C 1.38470 * 120.30389 * 0.02562 * 11 10 9 13 13 C 1.38121 * 120.36388 * 359.96380 * 12 11 10 14 14 C 1.38733 * 120.07210 * 0.03692 * 13 12 11 15 15 O 1.35643 * 120.14995 * 180.25207 * 14 13 12 16 16 C 1.34811 * 116.99766 * 355.78053 * 15 14 13 17 17 H 1.07997 * 120.00038 * 5.02906 * 16 15 14 18 18 C 1.38650 * 119.99680 * 185.02136 * 16 15 14 19 19 N 1.31560 * 120.00010 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99652 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47164 * 90.00496 * 20 18 16 22 22 H 1.48505 * 109.46573 * 210.00121 * 20 18 16 23 23 H 1.48491 * 109.47236 * 330.00004 * 20 18 16 24 24 H 1.09008 * 109.47089 * 60.00085 * 1 2 3 25 25 H 1.09004 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46832 * 300.00266 * 1 2 3 27 27 H 1.09002 * 109.47329 * 239.99866 * 2 1 3 28 28 H 1.08999 * 109.47224 * 120.00172 * 2 1 3 29 29 H 1.00899 * 111.00390 * 56.04143 * 3 2 1 30 30 H 1.09001 * 109.46731 * 299.99694 * 6 4 3 31 31 H 1.08994 * 109.47238 * 60.00411 * 6 4 3 32 32 H 1.08998 * 109.46631 * 180.02562 * 6 4 3 33 33 H 1.08007 * 120.00293 * 302.35062 * 7 4 3 34 34 H 1.08001 * 119.99862 * 186.92197 * 8 7 4 35 35 H 1.08004 * 120.03699 * 359.95546 * 10 9 8 36 36 H 1.08002 * 119.84770 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.82029 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.96576 * 180.02562 * 13 12 11 39 39 H 0.97005 * 119.99619 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8741 0.5922 0.5885 6 6 4.0007 1.3122 -1.4379 7 6 3.9563 2.7246 0.5998 8 6 4.7579 2.7167 1.6569 9 6 5.3147 1.4416 2.1518 10 6 5.7934 0.4890 1.2520 11 6 6.3128 -0.7000 1.7204 12 6 6.3612 -0.9536 3.0808 13 6 5.8909 -0.0190 3.9824 14 6 5.3653 1.1819 3.5283 15 8 4.9076 2.1031 4.4126 16 6 4.9108 1.7554 5.7151 17 1 5.3419 0.8138 6.0216 18 6 4.3609 2.6068 6.6611 19 7 3.8355 3.7537 6.2876 20 14 4.3659 2.1254 8.4661 21 1 5.6107 2.6205 9.1069 22 1 3.1882 2.7267 9.1419 23 1 4.3028 0.6466 8.5841 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6442 1.9013 0.7813 30 1 3.6622 0.3715 -1.8721 31 1 3.6149 2.1441 -2.0270 32 1 5.0904 1.3409 -1.4383 33 1 3.6391 3.6632 0.1697 34 1 5.0035 3.6429 2.1553 35 1 5.7570 0.6822 0.1900 36 1 6.6834 -1.4365 1.0227 37 1 6.7691 -1.8873 3.4388 38 1 5.9321 -0.2233 5.0421 39 1 3.4504 4.3492 6.9495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310047839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:36 Heat of formation + Delta-G solvation = -7.186306 kcal Electronic energy + Delta-G solvation = -19490.489817 eV Core-core repulsion = 16591.242046 eV Total energy + Delta-G solvation = -2899.247771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97846 -39.01786 -37.76712 -35.20996 -34.32456 -32.34535 -30.84638 -29.75371 -29.03067 -27.35147 -24.61757 -23.34376 -22.95668 -22.17870 -20.15754 -19.85606 -18.50115 -17.25436 -16.63014 -16.36218 -16.18222 -15.88938 -15.62704 -15.42977 -15.01906 -14.86714 -14.35145 -14.16649 -13.60464 -13.52290 -13.23656 -13.18783 -13.05927 -12.62759 -12.52388 -12.37280 -12.32954 -12.23343 -12.11159 -11.97005 -11.55336 -11.11603 -10.84051 -10.58363 -9.61543 -9.17689 -8.80576 -8.49525 -6.16500 0.25252 0.70778 1.32705 1.41655 1.46259 1.49739 2.14836 2.82388 3.16147 3.33087 3.46261 3.84583 4.03376 4.12287 4.24093 4.25264 4.30072 4.45383 4.52874 4.60062 4.61059 4.66381 4.80663 4.84805 4.99538 5.06377 5.09424 5.10498 5.11977 5.26895 5.29743 5.41805 5.50734 5.55641 5.72862 5.77092 5.83390 6.01487 6.16803 6.21839 6.39654 6.95155 7.76049 8.72939 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.005834 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.391578 B = 4797.920792 C = 5384.706828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.685 5.685 4 C 0.101 3.899 5 H 0.054 0.946 6 C -0.129 4.129 7 C -0.158 4.158 8 C -0.095 4.095 9 C -0.150 4.150 10 C -0.062 4.062 11 C -0.195 4.195 12 C -0.070 4.070 13 C -0.251 4.251 14 C 0.120 3.880 15 O -0.218 6.218 16 C -0.416 4.416 17 H 0.099 0.901 18 C -0.019 4.019 19 N -0.915 5.915 20 Si 1.016 2.984 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.254 1.254 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.010 0.990 29 H 0.335 0.665 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -8.727 -11.472 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.316 5.316 4 C -0.007 4.007 5 H 0.071 0.929 6 C -0.187 4.187 7 C -0.177 4.177 8 C -0.114 4.114 9 C -0.152 4.152 10 C -0.080 4.080 11 C -0.214 4.214 12 C -0.088 4.088 13 C -0.270 4.270 14 C 0.069 3.931 15 O -0.124 6.124 16 C -0.492 4.492 17 H 0.117 0.883 18 C -0.217 4.217 19 N -0.553 5.553 20 Si 0.835 3.165 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.178 1.178 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.029 0.971 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.764 -8.270 -12.111 14.685 hybrid contribution 0.171 0.131 2.257 2.267 sum -0.593 -8.139 -9.854 12.794 Atomic orbital electron populations 1.21729 0.93836 1.02459 1.02129 1.22009 0.96576 0.89069 1.00038 1.60744 1.07436 1.13976 1.49421 1.20938 0.87682 0.94606 0.97517 0.92855 1.21736 1.00380 1.02517 0.94019 1.23244 0.98424 0.99332 0.96658 1.21455 0.98751 0.95391 0.95782 1.18523 1.09351 0.97750 0.89526 1.21343 0.95224 0.92430 0.98989 1.21119 1.06125 0.98668 0.95463 1.21231 0.96109 0.98143 0.93275 1.21281 1.08834 0.96053 1.00858 1.20065 0.93155 0.89503 0.90413 1.83912 1.73637 1.37867 1.16984 1.21807 1.40808 1.06695 0.79913 0.88338 1.26531 0.95112 0.94970 1.05097 1.70184 1.37871 1.10596 1.36642 0.84628 0.78682 0.79209 0.73968 1.18784 1.19558 1.17791 0.91412 0.90811 0.93674 0.89970 0.97123 0.84816 0.91850 0.91770 0.91652 0.85576 0.89008 0.83518 0.83013 0.83788 0.86440 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.17 71.98 0.73 -2.30 16 2 C 0.05 1.31 6.20 86.30 0.54 1.84 16 3 N -0.68 -19.37 6.30 -495.46 -3.12 -22.49 16 4 C 0.10 2.94 2.05 44.17 0.09 3.03 16 5 H 0.05 1.75 4.30 -2.39 -0.01 1.74 16 6 C -0.13 -2.93 8.99 71.98 0.65 -2.28 16 7 C -0.16 -5.27 8.70 24.52 0.21 -5.06 16 8 C -0.09 -3.88 9.32 23.60 0.22 -3.66 16 9 C -0.15 -6.39 5.10 -20.01 -0.10 -6.50 16 10 C -0.06 -2.09 7.28 22.51 0.16 -1.93 16 11 C -0.20 -5.96 10.03 22.26 0.22 -5.73 16 12 C -0.07 -2.37 10.03 22.30 0.22 -2.14 16 13 C -0.25 -11.01 9.16 22.36 0.20 -10.80 16 14 C 0.12 5.99 6.66 22.86 0.15 6.15 16 15 O -0.22 -13.05 9.21 -21.37 -0.20 -13.24 16 16 C -0.42 -24.23 9.48 67.92 0.64 -23.59 16 17 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 18 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 19 N -0.92 -55.91 13.67 21.61 0.30 -55.61 16 20 Si 1.02 42.87 29.55 68.60 2.03 44.89 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.82 7.43 -2.39 -0.02 1.80 16 28 H 0.01 0.30 8.06 -2.39 -0.02 0.28 16 29 H 0.33 10.43 8.35 -89.69 -0.75 9.68 16 30 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.36 6.73 -2.39 -0.02 1.34 16 33 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.09 4.18 8.06 -2.91 -0.02 4.15 16 35 H 0.15 4.07 5.02 -2.91 -0.01 4.05 16 36 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.12 5.25 5.62 -2.91 -0.02 5.23 16 39 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -67.94 320.00 3.72 -64.21 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.30 Total: 35.82 kcal Atomic # 6 Polarization: -58.00 SS G_CDS: 4.41 Total: -53.58 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.83 Total: -78.10 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.20 Total: -13.24 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.94 3.72 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310047839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.028 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds