Wall clock time and date at job start Mon Mar 30 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99864 * 2 1 4 4 H 1.08999 * 109.47100 * 325.00368 * 3 2 1 5 5 C 1.53006 * 109.46587 * 84.99863 * 3 2 1 6 6 C 1.50696 * 109.47094 * 205.00094 * 3 2 1 7 7 C 1.50700 * 119.99783 * 303.36322 * 6 3 2 8 8 C 1.32645 * 119.99912 * 123.37369 * 6 3 2 9 9 C 1.47719 * 120.00149 * 6.92437 * 8 6 3 10 10 C 1.39642 * 120.07496 * 217.00236 * 9 8 6 11 11 C 1.37778 * 119.92392 * 179.74842 * 10 9 8 12 12 C 1.39039 * 120.07561 * 0.55525 * 11 10 9 13 13 O 1.35678 * 119.92721 * 179.72276 * 12 11 10 14 14 C 1.34819 * 116.99704 * 185.40133 * 13 12 11 15 15 H 1.07997 * 119.99798 * 354.93159 * 14 13 12 16 16 C 1.38646 * 119.99878 * 174.93469 * 14 13 12 17 17 N 1.31558 * 120.00080 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00054 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46853 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47271 * 119.99700 * 18 16 14 21 21 H 1.48497 * 109.47213 * 240.00409 * 18 16 14 22 22 C 1.39037 * 120.14176 * 359.69563 * 12 11 10 23 23 C 1.37774 * 120.07393 * 0.02562 * 22 12 11 24 24 H 1.08998 * 109.47076 * 59.99615 * 1 2 3 25 25 H 1.08994 * 109.46903 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47269 * 299.99945 * 1 2 3 27 27 H 1.00898 * 111.00011 * 123.95321 * 2 1 3 28 28 H 1.08999 * 109.46988 * 60.00437 * 5 3 2 29 29 H 1.09006 * 109.46913 * 179.97438 * 5 3 2 30 30 H 1.08993 * 109.47775 * 299.99868 * 5 3 2 31 31 H 1.08994 * 109.47432 * 269.99955 * 7 6 3 32 32 H 1.09001 * 109.46813 * 30.01027 * 7 6 3 33 33 H 1.09003 * 109.46517 * 150.00210 * 7 6 3 34 34 H 1.07995 * 119.99727 * 187.21312 * 8 6 3 35 35 H 1.07997 * 120.03400 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.96711 * 180.29415 * 11 10 9 37 37 H 0.97002 * 120.00387 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.96106 * 179.97438 * 22 12 11 39 39 H 1.08004 * 120.03514 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3397 2.0123 -0.5894 5 6 2.0608 1.8926 1.4371 6 6 3.3776 1.3790 -0.6005 7 6 4.4587 0.5082 -0.0139 8 6 3.6427 2.1522 -1.6451 9 6 2.6325 3.1173 -2.1250 10 6 2.4845 3.3533 -3.4933 11 6 1.5378 4.2502 -3.9377 12 6 0.7381 4.9287 -3.0249 13 8 -0.1894 5.8155 -3.4655 14 6 -0.8542 6.5218 -2.5292 15 1 -0.6976 6.3111 -1.4816 16 6 -1.7389 7.5187 -2.9111 17 7 -1.9293 7.7756 -4.1872 18 14 -2.6605 8.4969 -1.6138 19 1 -2.2715 8.0175 -0.2632 20 1 -2.3200 9.9364 -1.7446 21 1 -4.1222 8.3148 -1.8021 22 6 0.8864 4.6999 -1.6615 23 6 1.8273 3.8001 -1.2108 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8306 -0.5261 0.7814 28 1 2.7165 1.2517 2.0265 29 1 2.4518 2.9101 1.4372 30 1 1.0611 1.8871 1.8714 31 1 4.9902 1.0610 0.7606 32 1 4.0099 -0.3852 0.4203 33 1 5.1578 0.2190 -0.7986 34 1 4.5952 2.0729 -2.1478 35 1 3.1085 2.8299 -4.2027 36 1 1.4195 4.4297 -4.9961 37 1 -2.5486 8.4727 -4.4545 38 1 0.2640 5.2289 -0.9550 39 1 1.9418 3.6225 -0.1516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310048901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:37 Heat of formation + Delta-G solvation = 13.934600 kcal Electronic energy + Delta-G solvation = -19323.784773 eV Core-core repulsion = 16425.452873 eV Total energy + Delta-G solvation = -2898.331900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35292 -38.06140 -36.21720 -33.78094 -32.28939 -30.49074 -29.86402 -29.24099 -26.21409 -25.24382 -24.90834 -22.88839 -21.55549 -20.76157 -18.18508 -17.97680 -17.02674 -15.80600 -15.25361 -14.75822 -14.51134 -14.31984 -13.96176 -13.74002 -13.51034 -13.18875 -13.12450 -12.73728 -12.56191 -12.35879 -12.26209 -12.05796 -11.85831 -11.69455 -11.50394 -11.15343 -10.96918 -10.82562 -10.58507 -10.44673 -10.14891 -9.37244 -9.05016 -8.61881 -8.32401 -8.16309 -6.93542 -6.49151 -4.06534 1.80467 2.21546 2.89889 3.10781 3.12733 3.16712 3.93363 4.39209 4.58592 4.94418 5.06663 5.10953 5.24966 5.29303 5.39721 5.44082 5.51028 5.52867 5.58917 5.73915 5.75458 5.83034 5.94815 5.96839 6.02912 6.07273 6.14057 6.20505 6.37657 6.67678 6.78049 6.90443 6.96383 7.09137 7.16141 7.30121 7.39577 7.43399 7.47694 7.80974 7.96236 8.96501 9.66732 10.68711 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.004884 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.291427 B = 5731.365629 C = 6304.901109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.684 5.684 3 C 0.102 3.898 4 H 0.110 0.890 5 C -0.181 4.181 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.086 4.086 9 C -0.159 4.159 10 C -0.060 4.060 11 C -0.193 4.193 12 C 0.157 3.843 13 O -0.175 6.175 14 C -0.391 4.391 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.238 4.238 23 C -0.068 4.068 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.332 0.668 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -11.462 9.228 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.313 5.313 3 C -0.007 4.007 4 H 0.128 0.872 5 C -0.240 4.240 6 C -0.134 4.134 7 C -0.161 4.161 8 C -0.105 4.105 9 C -0.160 4.160 10 C -0.078 4.078 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.078 6.078 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.258 4.258 23 C -0.086 4.086 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.150 0.850 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.359 -11.306 8.171 15.772 hybrid contribution -0.664 0.791 1.598 1.902 sum 6.696 -10.515 9.769 15.838 Atomic orbital electron populations 1.22211 0.87871 1.01401 1.00742 1.60493 1.07465 1.14093 1.49254 1.21122 0.94798 0.89606 0.95125 0.87234 1.22521 1.01467 1.02271 0.97726 1.21570 0.94634 0.98922 0.98246 1.20629 0.96601 0.98595 1.00274 1.21363 0.97527 0.95666 0.95922 1.18483 1.01522 1.02839 0.93118 1.20732 0.96694 0.96014 0.94356 1.20161 0.99893 1.02392 0.98806 1.19482 0.88388 0.89883 0.92019 1.83954 1.43273 1.45010 1.35550 1.21393 1.21950 1.15063 0.88329 0.88961 1.25302 0.97207 0.96642 0.97365 1.70048 1.34170 1.30447 1.14818 0.85647 0.79035 0.79236 0.79517 1.19100 1.20076 1.20090 1.21090 1.04300 1.04653 0.95718 1.21130 0.94399 0.94650 0.98433 0.91352 0.91792 0.96157 0.85028 0.92551 0.91592 0.92836 0.92382 0.92248 0.92394 0.87381 0.86905 0.86457 0.91998 0.85566 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.50 60.07 0.63 0.95 16 2 N -0.68 -8.46 6.29 -115.24 -0.73 -9.19 16 3 C 0.10 1.37 1.85 -68.86 -0.13 1.24 16 4 H 0.11 1.77 4.07 -51.93 -0.21 1.56 16 5 C -0.18 -2.09 8.49 37.16 0.32 -1.78 16 6 C -0.13 -1.79 5.01 -101.25 -0.51 -2.29 16 7 C -0.10 -1.11 9.57 36.01 0.34 -0.77 16 8 C -0.09 -1.29 9.40 -37.61 -0.35 -1.64 16 9 C -0.16 -2.83 5.24 -104.97 -0.55 -3.38 16 10 C -0.06 -1.10 9.78 -39.23 -0.38 -1.48 16 11 C -0.19 -4.13 9.97 -39.45 -0.39 -4.53 16 12 C 0.16 3.79 6.65 -38.99 -0.26 3.53 16 13 O -0.17 -4.98 9.75 0.30 0.00 -4.98 16 14 C -0.39 -10.87 9.48 30.88 0.29 -10.58 16 15 H 0.09 2.38 5.19 -52.49 -0.27 2.10 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.08 13.67 55.48 0.76 -24.32 16 18 Si 0.94 20.37 29.55 -169.99 -5.02 15.34 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 C -0.24 -5.18 9.15 -39.45 -0.36 -5.54 16 23 C -0.07 -1.27 7.24 -39.23 -0.28 -1.55 16 24 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.22 7.44 -51.93 -0.39 -0.16 16 27 H 0.33 3.46 7.97 -39.29 -0.31 3.14 16 28 H 0.06 0.56 7.84 -51.93 -0.41 0.16 16 29 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 30 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.58 7.26 -51.93 -0.38 0.21 16 33 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 34 H 0.11 1.44 8.04 -52.49 -0.42 1.02 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.13 2.74 5.62 -52.49 -0.29 2.45 16 39 H 0.12 1.88 4.37 -52.48 -0.23 1.65 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -29.95 317.21 -7.25 -37.20 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.31 Total: 7.99 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -1.73 Total: -26.83 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.03 Total: -33.51 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.95 -7.25 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310048901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.135 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds