Wall clock time and date at job start Mon Mar 30 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99864 * 2 1 4 4 H 1.08999 * 109.47100 * 325.00368 * 3 2 1 5 5 C 1.53006 * 109.46587 * 84.99863 * 3 2 1 6 6 C 1.50696 * 109.47094 * 205.00094 * 3 2 1 7 7 C 1.50700 * 119.99783 * 303.36322 * 6 3 2 8 8 C 1.32645 * 119.99912 * 123.37369 * 6 3 2 9 9 C 1.47719 * 120.00149 * 6.92437 * 8 6 3 10 10 C 1.39642 * 120.07496 * 217.00236 * 9 8 6 11 11 C 1.37778 * 119.92392 * 179.74842 * 10 9 8 12 12 C 1.39039 * 120.07561 * 0.55525 * 11 10 9 13 13 O 1.35678 * 119.92721 * 179.72276 * 12 11 10 14 14 C 1.34819 * 116.99704 * 185.40133 * 13 12 11 15 15 H 1.07997 * 119.99798 * 354.93159 * 14 13 12 16 16 C 1.38646 * 119.99878 * 174.93469 * 14 13 12 17 17 N 1.31558 * 120.00080 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00054 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46853 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47271 * 119.99700 * 18 16 14 21 21 H 1.48497 * 109.47213 * 240.00409 * 18 16 14 22 22 C 1.39037 * 120.14176 * 359.69563 * 12 11 10 23 23 C 1.37774 * 120.07393 * 0.02562 * 22 12 11 24 24 H 1.08998 * 109.47076 * 59.99615 * 1 2 3 25 25 H 1.08994 * 109.46903 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47269 * 299.99945 * 1 2 3 27 27 H 1.00898 * 111.00011 * 123.95321 * 2 1 3 28 28 H 1.08999 * 109.46988 * 60.00437 * 5 3 2 29 29 H 1.09006 * 109.46913 * 179.97438 * 5 3 2 30 30 H 1.08993 * 109.47775 * 299.99868 * 5 3 2 31 31 H 1.08994 * 109.47432 * 269.99955 * 7 6 3 32 32 H 1.09001 * 109.46813 * 30.01027 * 7 6 3 33 33 H 1.09003 * 109.46517 * 150.00210 * 7 6 3 34 34 H 1.07995 * 119.99727 * 187.21312 * 8 6 3 35 35 H 1.07997 * 120.03400 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.96711 * 180.29415 * 11 10 9 37 37 H 0.97002 * 120.00387 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.96106 * 179.97438 * 22 12 11 39 39 H 1.08004 * 120.03514 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3397 2.0123 -0.5894 5 6 2.0608 1.8926 1.4371 6 6 3.3776 1.3790 -0.6005 7 6 4.4587 0.5082 -0.0139 8 6 3.6427 2.1522 -1.6451 9 6 2.6325 3.1173 -2.1250 10 6 2.4845 3.3533 -3.4933 11 6 1.5378 4.2502 -3.9377 12 6 0.7381 4.9287 -3.0249 13 8 -0.1894 5.8155 -3.4655 14 6 -0.8542 6.5218 -2.5292 15 1 -0.6976 6.3111 -1.4816 16 6 -1.7389 7.5187 -2.9111 17 7 -1.9293 7.7756 -4.1872 18 14 -2.6605 8.4969 -1.6138 19 1 -2.2715 8.0175 -0.2632 20 1 -2.3200 9.9364 -1.7446 21 1 -4.1222 8.3148 -1.8021 22 6 0.8864 4.6999 -1.6615 23 6 1.8273 3.8001 -1.2108 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8306 -0.5261 0.7814 28 1 2.7165 1.2517 2.0265 29 1 2.4518 2.9101 1.4372 30 1 1.0611 1.8871 1.8714 31 1 4.9902 1.0610 0.7606 32 1 4.0099 -0.3852 0.4203 33 1 5.1578 0.2190 -0.7986 34 1 4.5952 2.0729 -2.1478 35 1 3.1085 2.8299 -4.2027 36 1 1.4195 4.4297 -4.9961 37 1 -2.5486 8.4727 -4.4545 38 1 0.2640 5.2289 -0.9550 39 1 1.9418 3.6225 -0.1516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310048901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:37 Heat of formation + Delta-G solvation = -4.938193 kcal Electronic energy + Delta-G solvation = -19324.603159 eV Core-core repulsion = 16425.452873 eV Total energy + Delta-G solvation = -2899.150286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95426 -39.48128 -37.72449 -34.98264 -34.20961 -32.01396 -31.21802 -30.38453 -27.81706 -26.63431 -26.12135 -24.21030 -23.10823 -22.22584 -19.86145 -19.39114 -18.73043 -17.05665 -16.71693 -16.20711 -15.93428 -15.84254 -15.56110 -15.16708 -14.75754 -14.63823 -14.43982 -14.07709 -13.76717 -13.57116 -13.43284 -13.21097 -13.15890 -13.06458 -12.82587 -12.67279 -12.34951 -12.20339 -12.11853 -11.96720 -11.38993 -11.18229 -10.85595 -10.03964 -9.76518 -9.34308 -8.53501 -8.48544 -6.16159 0.36021 0.57348 1.33649 1.38887 1.51992 1.60601 2.16045 2.84116 3.16229 3.43101 3.50108 3.88321 4.03032 4.08568 4.16226 4.18811 4.37581 4.50302 4.53026 4.58558 4.63601 4.69285 4.74163 4.90047 4.97036 5.02040 5.03375 5.07699 5.09608 5.19841 5.25173 5.31303 5.50806 5.64647 5.69314 5.80894 6.00571 6.03814 6.13143 6.24374 6.56738 6.95553 7.76094 8.74308 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.004884 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.291427 B = 5731.365629 C = 6304.901109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.688 5.688 3 C 0.095 3.905 4 H 0.079 0.921 5 C -0.177 4.177 6 C -0.105 4.105 7 C -0.105 4.105 8 C -0.119 4.119 9 C -0.132 4.132 10 C -0.060 4.060 11 C -0.204 4.204 12 C 0.114 3.886 13 O -0.230 6.230 14 C -0.414 4.414 15 H 0.101 0.899 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.019 2.981 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.267 1.267 22 C -0.244 4.244 23 C -0.067 4.067 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.026 0.974 27 H 0.348 0.652 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 -13.827 12.041 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.319 5.319 3 C -0.014 4.014 4 H 0.096 0.904 5 C -0.236 4.236 6 C -0.105 4.105 7 C -0.162 4.162 8 C -0.138 4.138 9 C -0.133 4.133 10 C -0.078 4.078 11 C -0.223 4.223 12 C 0.064 3.936 13 O -0.136 6.136 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.838 3.162 19 H -0.175 1.175 20 H -0.192 1.192 21 H -0.192 1.192 22 C -0.263 4.263 23 C -0.085 4.085 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.167 0.833 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.441 -13.726 11.008 19.968 hybrid contribution -1.019 1.133 0.838 1.739 sum 8.422 -12.593 11.847 19.232 Atomic orbital electron populations 1.22187 0.87692 1.02407 0.99810 1.60434 1.07728 1.13431 1.50268 1.21073 0.94312 0.90038 0.95977 0.90361 1.22473 1.02262 1.02339 0.96505 1.21981 0.95155 0.97252 0.96154 1.20722 0.95841 0.98592 1.01026 1.21420 0.97940 0.96695 0.97750 1.18960 1.00313 1.01341 0.92679 1.21133 0.95906 0.95118 0.95625 1.20405 1.00361 1.02945 0.98580 1.19995 0.89282 0.90565 0.93767 1.83922 1.45766 1.47367 1.36586 1.21859 1.22521 1.15707 0.88881 0.88162 1.26592 0.97968 0.97513 0.99889 1.70190 1.36118 1.32086 1.17349 0.84534 0.77484 0.77405 0.76804 1.17518 1.19249 1.19230 1.21159 1.05094 1.05387 0.94650 1.21399 0.93505 0.93525 1.00023 0.93877 0.89834 0.95517 0.83293 0.90251 0.92041 0.92626 0.90567 0.91024 0.91292 0.85015 0.83383 0.86719 0.91784 0.86360 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.50 127.69 1.34 1.96 16 2 N -0.69 -14.78 6.29 -518.51 -3.26 -18.04 16 3 C 0.10 2.26 1.85 44.17 0.08 2.34 16 4 H 0.08 2.40 4.07 -2.39 -0.01 2.39 16 5 C -0.18 -3.45 8.49 71.98 0.61 -2.84 16 6 C -0.10 -2.38 5.01 -17.61 -0.09 -2.47 16 7 C -0.11 -1.68 9.57 71.24 0.68 -1.00 16 8 C -0.12 -3.13 9.40 23.61 0.22 -2.91 16 9 C -0.13 -4.47 5.24 -20.09 -0.11 -4.58 16 10 C -0.06 -2.15 9.78 22.50 0.22 -1.93 16 11 C -0.20 -9.02 9.97 22.35 0.22 -8.80 16 12 C 0.11 5.86 6.65 22.65 0.15 6.02 16 13 O -0.23 -14.10 9.75 -21.83 -0.21 -14.31 16 14 C -0.41 -24.39 9.48 67.92 0.64 -23.75 16 15 H 0.10 5.45 5.19 -2.91 -0.02 5.43 16 16 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 17 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 18 Si 1.02 43.09 29.55 68.60 2.03 45.12 16 19 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 C -0.24 -10.96 9.15 22.35 0.20 -10.76 16 23 C -0.07 -2.44 7.24 22.50 0.16 -2.28 16 24 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.03 0.54 7.44 -2.39 -0.02 0.52 16 27 H 0.35 5.75 7.97 -89.70 -0.72 5.03 16 28 H 0.08 1.20 7.84 -2.39 -0.02 1.18 16 29 H 0.06 1.26 6.74 -2.38 -0.02 1.24 16 30 H 0.05 1.07 7.45 -2.39 -0.02 1.06 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.01 7.26 -2.39 -0.02 1.00 16 33 H 0.07 1.01 8.05 -2.39 -0.02 0.99 16 34 H 0.13 2.90 8.04 -2.91 -0.02 2.88 16 35 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.12 5.39 5.62 -2.91 -0.02 5.37 16 39 H 0.14 4.34 4.37 -2.91 -0.01 4.33 16 Total: -1.00 -70.14 317.21 4.01 -66.13 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.35 Total: 29.42 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 4.81 Total: -51.78 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -2.97 Total: -74.58 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.21 Total: -14.31 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -70.14 4.01 -66.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310048901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.191 kcal (2) G-P(sol) polarization free energy of solvation -70.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds