Wall clock time and date at job start Mon Mar 30 2020 07:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 C 1.52998 * 109.47184 * 119.99615 * 2 1 3 5 5 N 1.46499 * 109.47171 * 174.99780 * 4 2 1 6 6 C 1.37511 * 119.99983 * 180.02562 * 5 4 2 7 7 N 1.30326 * 120.00289 * 0.02562 * 6 5 4 8 8 N 1.37690 * 119.99984 * 180.02562 * 6 5 4 9 9 C 1.39116 * 120.00003 * 185.24786 * 8 6 5 10 10 C 1.39518 * 119.83381 * 33.97153 * 9 8 6 11 11 C 1.36361 * 120.16404 * 180.24877 * 10 9 8 12 12 C 1.40884 * 119.82823 * 359.52725 * 11 10 9 13 13 C 1.41136 * 120.15817 * 180.20372 * 12 11 10 14 14 H 1.08002 * 120.00350 * 205.52751 * 13 12 11 15 15 C 1.39884 * 120.00145 * 25.53279 * 13 12 11 16 16 N 1.30888 * 119.99637 * 16.69838 * 15 13 12 17 17 Si 1.86795 * 120.00250 * 196.69818 * 15 13 12 18 18 H 1.48503 * 109.46803 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47111 * 119.99935 * 17 15 13 20 20 H 1.48502 * 109.47376 * 240.00021 * 17 15 13 21 21 C 1.40878 * 119.67893 * 0.49013 * 12 11 10 22 22 C 1.36353 * 119.83556 * 359.73722 * 21 12 11 23 23 H 1.08995 * 109.47004 * 300.00092 * 1 2 3 24 24 H 1.09000 * 109.47031 * 60.00301 * 1 2 3 25 25 H 1.08997 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47307 * 240.00189 * 2 1 3 27 27 H 1.09000 * 109.46907 * 59.99326 * 3 2 1 28 28 H 1.08988 * 109.47668 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46568 * 300.00494 * 3 2 1 30 30 H 1.09007 * 109.47048 * 55.00173 * 4 2 1 31 31 H 1.08998 * 109.47737 * 295.00492 * 4 2 1 32 32 H 0.96994 * 120.00289 * 0.02562 * 5 4 2 33 33 H 0.97005 * 119.99505 * 359.97438 * 7 6 5 34 34 H 0.97000 * 120.00279 * 5.24880 * 8 6 5 35 35 H 1.08003 * 119.92053 * 359.97438 * 10 9 8 36 36 H 1.07995 * 120.08310 * 179.72288 * 11 10 9 37 37 H 0.97002 * 119.99904 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.08030 * 179.70704 * 21 12 11 39 39 H 1.07992 * 119.92361 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1866 -1.4413 2.2110 7 7 3.5385 -1.9310 3.2301 8 7 5.5589 -1.5397 2.1561 9 6 6.2445 -2.2561 3.1318 10 6 5.6619 -3.3903 3.6980 11 6 6.3258 -4.0946 4.6586 12 6 7.6073 -3.6800 5.0717 13 6 8.3024 -4.4063 6.0623 14 1 9.0481 -3.9143 6.6692 15 6 8.0257 -5.7635 6.2580 16 7 7.3837 -6.4395 5.3393 17 14 8.5723 -6.6109 7.8303 18 1 9.2741 -5.6338 8.7010 19 1 7.3844 -7.1459 8.5430 20 1 9.4935 -7.7269 7.4967 21 6 8.1889 -2.5335 4.4957 22 6 7.5112 -1.8365 3.5396 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9824 -0.4622 0.4320 33 1 2.5718 -1.8614 3.2690 34 1 6.0477 -1.1095 1.4371 35 1 4.6808 -3.7088 3.3780 36 1 5.8717 -4.9698 5.0992 37 1 7.1915 -7.3805 5.4751 38 1 9.1689 -2.2071 4.8110 39 1 7.9555 -0.9572 3.0974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310077653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:55 Heat of formation + Delta-G solvation = 44.357519 kcal Electronic energy + Delta-G solvation = -18746.690135 eV Core-core repulsion = 15881.970223 eV Total energy + Delta-G solvation = -2864.719912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.92364 -37.55761 -35.92604 -33.86185 -32.43750 -30.60654 -29.21865 -28.70203 -27.49500 -26.17659 -24.35260 -21.27594 -20.87671 -20.46456 -19.41308 -17.55465 -17.14012 -16.53320 -15.58111 -15.23079 -14.84446 -14.48328 -13.98271 -13.76987 -13.58808 -13.04263 -12.91187 -12.57984 -12.48552 -12.04348 -11.84046 -11.65458 -11.40052 -11.27964 -11.04157 -11.02248 -10.99663 -10.77255 -10.43829 -9.68014 -9.38401 -9.04261 -8.72812 -8.57021 -7.77984 -7.29121 -6.69905 -6.49722 -4.11578 2.82681 3.14534 3.16549 3.22063 3.24488 3.32438 3.74903 4.05491 4.44608 4.47698 4.56898 4.74545 4.81851 5.22885 5.29462 5.36784 5.44603 5.52756 5.65056 5.76207 5.89664 5.92474 5.99605 6.25596 6.34656 6.58752 6.76778 7.00840 7.21553 7.24184 7.41710 7.50447 7.71791 7.82940 8.00031 8.23916 8.41016 8.46597 8.58810 8.83020 9.06505 9.16789 9.42033 10.35142 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.003535 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.646697 B = 7919.871350 C = 8348.810467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.147 4.147 4 C 0.137 3.863 5 N -0.779 5.779 6 C 0.624 3.376 7 N -0.804 5.804 8 N -0.653 5.653 9 C 0.036 3.964 10 C -0.076 4.076 11 C -0.154 4.154 12 C 0.101 3.899 13 C -0.462 4.462 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.798 5.798 17 Si 0.905 3.095 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.277 1.277 21 C -0.215 4.215 22 C -0.117 4.117 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.384 0.616 33 H 0.325 0.675 34 H 0.394 0.606 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.277 0.723 38 H 0.092 0.908 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 9.916 -10.340 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.205 4.205 4 C 0.012 3.988 5 N -0.427 5.427 6 C 0.258 3.742 7 N -0.452 5.452 8 N -0.286 5.286 9 C -0.057 4.057 10 C -0.097 4.097 11 C -0.174 4.174 12 C 0.098 3.902 13 C -0.492 4.492 14 H 0.093 0.907 15 C -0.142 4.142 16 N -0.424 5.424 17 Si 0.730 3.270 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.235 4.235 22 C -0.138 4.138 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.218 0.782 33 H 0.141 0.859 34 H 0.228 0.772 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.734 9.089 -9.358 16.277 hybrid contribution -0.097 0.323 -0.623 0.708 sum -9.831 9.412 -9.981 16.878 Atomic orbital electron populations 1.21768 0.94146 1.02201 1.02180 1.21287 0.96463 0.96678 0.97914 1.21849 1.01236 0.95483 1.01887 1.21194 0.79974 0.99746 0.97880 1.45505 1.06075 1.66715 1.24359 1.18999 0.85003 0.86625 0.83587 1.70115 1.13457 1.37556 1.24027 1.40894 1.00982 1.57251 1.29495 1.16952 0.94080 0.95706 0.98947 1.20474 0.98845 0.92750 0.97642 1.20976 0.94782 1.01412 1.00204 1.17631 0.91055 0.90712 0.90815 1.19507 1.19530 0.93910 1.16299 0.90704 1.25866 0.93633 0.97845 0.96854 1.69872 1.31800 1.09258 1.31443 0.86324 0.79053 0.79305 0.82338 1.18548 1.19843 1.20210 1.20473 0.99574 1.01517 1.01971 1.19978 0.95249 0.98980 0.99636 0.92313 0.92248 0.92312 0.90621 0.92461 0.92504 0.92597 0.92422 0.92410 0.78236 0.85941 0.77216 0.87278 0.86517 0.91205 0.89006 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.10 -0.80 2.96 -90.62 -0.27 -1.07 16 3 C -0.15 -1.07 9.07 37.16 0.34 -0.74 16 4 C 0.14 1.42 4.41 -4.04 -0.02 1.41 16 5 N -0.78 -9.61 5.40 -61.73 -0.33 -9.94 16 6 C 0.62 10.80 8.44 -319.78 -2.70 8.10 16 7 N -0.80 -15.89 10.76 30.19 0.32 -15.57 16 8 N -0.65 -11.91 5.42 -11.02 -0.06 -11.97 16 9 C 0.04 0.83 6.29 -83.60 -0.53 0.30 16 10 C -0.08 -1.94 8.50 -39.78 -0.34 -2.28 16 11 C -0.15 -4.24 8.63 -39.26 -0.34 -4.57 16 12 C 0.10 2.79 5.57 -106.80 -0.59 2.20 16 13 C -0.46 -12.74 9.04 -37.87 -0.34 -13.08 16 14 H 0.07 1.99 7.90 -52.49 -0.41 1.57 16 15 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 16 N -0.80 -21.45 10.95 55.54 0.61 -20.85 16 17 Si 0.90 19.42 29.59 -169.99 -5.03 14.39 16 18 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 C -0.22 -5.44 9.74 -39.26 -0.38 -5.82 16 22 C -0.12 -2.69 9.89 -39.78 -0.39 -3.08 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 7.18 -51.94 -0.37 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.64 7.97 -51.93 -0.41 0.22 16 31 H 0.06 0.64 7.97 -51.93 -0.41 0.22 16 32 H 0.38 3.91 7.76 -40.82 -0.32 3.59 16 33 H 0.32 5.68 7.15 -40.82 -0.29 5.39 16 34 H 0.39 5.82 8.91 -40.82 -0.36 5.45 16 35 H 0.11 2.75 6.30 -52.48 -0.33 2.42 16 36 H 0.12 3.35 6.18 -52.49 -0.32 3.02 16 37 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -30.35 320.89 -10.72 -41.08 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -5.76 Total: 15.41 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -5.31 Total: -17.39 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.54 Total: -58.32 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.35 -10.72 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310077653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.434 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds