Wall clock time and date at job start Mon Mar 30 2020 07:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 C 1.52998 * 109.47184 * 119.99615 * 2 1 3 5 5 N 1.46499 * 109.47171 * 174.99780 * 4 2 1 6 6 C 1.37511 * 119.99983 * 180.02562 * 5 4 2 7 7 N 1.30326 * 120.00289 * 0.02562 * 6 5 4 8 8 N 1.37690 * 119.99984 * 180.02562 * 6 5 4 9 9 C 1.39116 * 120.00003 * 185.24786 * 8 6 5 10 10 C 1.39518 * 119.83381 * 33.97153 * 9 8 6 11 11 C 1.36361 * 120.16404 * 180.24877 * 10 9 8 12 12 C 1.40884 * 119.82823 * 359.52725 * 11 10 9 13 13 C 1.41136 * 120.15817 * 180.20372 * 12 11 10 14 14 H 1.08002 * 120.00350 * 205.52751 * 13 12 11 15 15 C 1.39884 * 120.00145 * 25.53279 * 13 12 11 16 16 N 1.30888 * 119.99637 * 16.69838 * 15 13 12 17 17 Si 1.86795 * 120.00250 * 196.69818 * 15 13 12 18 18 H 1.48503 * 109.46803 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47111 * 119.99935 * 17 15 13 20 20 H 1.48502 * 109.47376 * 240.00021 * 17 15 13 21 21 C 1.40878 * 119.67893 * 0.49013 * 12 11 10 22 22 C 1.36353 * 119.83556 * 359.73722 * 21 12 11 23 23 H 1.08995 * 109.47004 * 300.00092 * 1 2 3 24 24 H 1.09000 * 109.47031 * 60.00301 * 1 2 3 25 25 H 1.08997 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47307 * 240.00189 * 2 1 3 27 27 H 1.09000 * 109.46907 * 59.99326 * 3 2 1 28 28 H 1.08988 * 109.47668 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46568 * 300.00494 * 3 2 1 30 30 H 1.09007 * 109.47048 * 55.00173 * 4 2 1 31 31 H 1.08998 * 109.47737 * 295.00492 * 4 2 1 32 32 H 0.96994 * 120.00289 * 0.02562 * 5 4 2 33 33 H 0.97005 * 119.99505 * 359.97438 * 7 6 5 34 34 H 0.97000 * 120.00279 * 5.24880 * 8 6 5 35 35 H 1.08003 * 119.92053 * 359.97438 * 10 9 8 36 36 H 1.07995 * 120.08310 * 179.72288 * 11 10 9 37 37 H 0.97002 * 119.99904 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.08030 * 179.70704 * 21 12 11 39 39 H 1.07992 * 119.92361 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1866 -1.4413 2.2110 7 7 3.5385 -1.9310 3.2301 8 7 5.5589 -1.5397 2.1561 9 6 6.2445 -2.2561 3.1318 10 6 5.6619 -3.3903 3.6980 11 6 6.3258 -4.0946 4.6586 12 6 7.6073 -3.6800 5.0717 13 6 8.3024 -4.4063 6.0623 14 1 9.0481 -3.9143 6.6692 15 6 8.0257 -5.7635 6.2580 16 7 7.3837 -6.4395 5.3393 17 14 8.5723 -6.6109 7.8303 18 1 9.2741 -5.6338 8.7010 19 1 7.3844 -7.1459 8.5430 20 1 9.4935 -7.7269 7.4967 21 6 8.1889 -2.5335 4.4957 22 6 7.5112 -1.8365 3.5396 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9824 -0.4622 0.4320 33 1 2.5718 -1.8614 3.2690 34 1 6.0477 -1.1095 1.4371 35 1 4.6808 -3.7088 3.3780 36 1 5.8717 -4.9698 5.0992 37 1 7.1915 -7.3805 5.4751 38 1 9.1689 -2.2071 4.8110 39 1 7.9555 -0.9572 3.0974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310077653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:54 Heat of formation + Delta-G solvation = 28.334482 kcal Electronic energy + Delta-G solvation = -18747.384947 eV Core-core repulsion = 15881.970223 eV Total energy + Delta-G solvation = -2865.414723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38786 -39.02567 -37.19013 -35.49576 -34.00675 -32.00292 -31.11943 -30.55691 -28.05777 -27.39346 -26.00815 -23.04574 -22.67047 -21.26087 -20.97922 -19.15760 -18.89971 -17.88732 -17.01238 -16.50241 -16.26874 -15.76621 -15.51398 -15.21766 -14.63830 -14.37940 -14.25764 -13.83712 -13.77998 -13.57371 -13.25062 -13.01342 -12.92421 -12.74175 -12.52046 -12.25514 -12.00092 -11.82543 -11.64840 -11.58170 -11.28907 -10.96024 -10.29798 -10.07783 -9.26482 -9.16450 -8.60923 -8.35142 -6.14532 1.00232 1.28732 1.40590 1.51778 1.56042 1.95275 2.23679 2.27115 2.87411 3.23080 3.76549 3.88451 3.93199 4.11262 4.53626 4.55276 4.64378 4.66087 4.67845 4.78367 4.81172 4.97533 5.02678 5.18342 5.20152 5.25781 5.34065 5.36126 5.39760 5.49316 5.59997 5.77519 5.88972 6.02095 6.21700 6.32848 6.48821 6.70702 6.84782 7.04783 7.15359 7.23285 8.04405 8.43655 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.003535 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.646697 B = 7919.871350 C = 8348.810467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.135 3.865 5 N -0.760 5.760 6 C 0.625 3.375 7 N -0.848 5.848 8 N -0.648 5.648 9 C 0.054 3.946 10 C -0.086 4.086 11 C -0.177 4.177 12 C 0.066 3.934 13 C -0.500 4.500 14 H 0.074 0.926 15 C 0.031 3.969 16 N -0.832 5.832 17 Si 0.981 3.019 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.265 1.265 21 C -0.225 4.225 22 C -0.115 4.115 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.400 0.600 33 H 0.333 0.667 34 H 0.414 0.586 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.284 0.716 38 H 0.103 0.897 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 11.333 -11.550 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C 0.011 3.989 5 N -0.407 5.407 6 C 0.259 3.741 7 N -0.497 5.497 8 N -0.284 5.284 9 C -0.041 4.041 10 C -0.107 4.107 11 C -0.197 4.197 12 C 0.064 3.936 13 C -0.530 4.530 14 H 0.092 0.908 15 C -0.183 4.183 16 N -0.459 5.459 17 Si 0.802 3.198 18 H -0.181 1.181 19 H -0.193 1.193 20 H -0.190 1.190 21 C -0.245 4.245 22 C -0.136 4.136 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.235 0.765 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.933 10.556 -10.638 17.979 hybrid contribution -0.155 0.012 -0.401 0.431 sum -10.088 10.568 -11.039 18.312 Atomic orbital electron populations 1.21768 0.93218 1.02381 1.02824 1.21243 0.97110 0.96631 0.96464 1.21845 1.01067 0.95096 1.02332 1.21364 0.78499 0.99778 0.99304 1.45338 1.06776 1.65281 1.23346 1.18911 0.84582 0.86316 0.84333 1.70034 1.14441 1.39199 1.26066 1.40707 1.01518 1.56927 1.29212 1.16970 0.94063 0.94598 0.98458 1.20520 0.98758 0.93707 0.97735 1.20868 0.95443 1.01610 1.01791 1.17956 0.91460 0.92230 0.91968 1.19749 1.20695 0.95078 1.17462 0.90807 1.26739 0.93438 0.98075 1.00007 1.69938 1.32816 1.09867 1.33272 0.85185 0.78777 0.78157 0.77686 1.18147 1.19282 1.19017 1.20724 1.00278 1.01081 1.02448 1.20305 0.94966 0.99675 0.98641 0.92375 0.90928 0.92411 0.89966 0.93025 0.92726 0.91204 0.93072 0.92945 0.76478 0.85056 0.74832 0.87634 0.88878 0.90553 0.87904 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 2 C -0.10 -1.23 2.96 -10.79 -0.03 -1.26 16 3 C -0.15 -1.74 9.07 71.98 0.65 -1.08 16 4 C 0.14 2.57 4.41 86.38 0.38 2.95 16 5 N -0.76 -17.05 5.40 -349.22 -1.88 -18.93 16 6 C 0.63 20.66 8.44 260.43 2.20 22.86 16 7 N -0.85 -33.19 10.76 -58.39 -0.63 -33.82 16 8 N -0.65 -22.24 5.42 -188.77 -1.02 -23.26 16 9 C 0.05 2.41 6.29 38.60 0.24 2.65 16 10 C -0.09 -4.46 8.50 22.14 0.19 -4.27 16 11 C -0.18 -10.14 8.63 22.48 0.19 -9.95 16 12 C 0.07 3.80 5.57 -21.27 -0.12 3.68 16 13 C -0.50 -28.40 9.04 23.38 0.21 -28.19 16 14 H 0.07 4.03 7.90 -2.91 -0.02 4.01 16 15 C 0.03 1.64 5.15 85.23 0.44 2.08 16 16 N -0.83 -46.27 10.95 21.82 0.24 -46.03 16 17 Si 0.98 40.50 29.59 68.60 2.03 42.53 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 C -0.23 -11.37 9.74 22.48 0.22 -11.15 16 22 C -0.11 -5.07 9.89 22.14 0.22 -4.85 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.67 7.18 -2.39 -0.02 0.65 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 1.07 7.97 -2.38 -0.02 1.05 16 31 H 0.05 1.08 7.97 -2.39 -0.02 1.06 16 32 H 0.40 6.89 7.76 -92.71 -0.72 6.17 16 33 H 0.33 11.62 7.15 -92.70 -0.66 10.96 16 34 H 0.41 10.87 8.91 -92.71 -0.83 10.04 16 35 H 0.11 5.45 6.30 -2.91 -0.02 5.44 16 36 H 0.09 5.66 6.18 -2.91 -0.02 5.65 16 37 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 38 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -67.40 320.89 3.05 -64.34 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -1.13 Total: 42.62 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 5.46 Total: -27.45 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -3.30 Total: -122.05 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -67.40 3.05 -64.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310077653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.676 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds