Wall clock time and date at job start Mon Mar 30 2020 07:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47235 * 2 1 4 4 C 1.52990 * 109.47232 * 239.99531 * 2 1 3 5 5 N 1.46502 * 109.46914 * 119.99769 * 2 1 3 6 6 C 1.37508 * 120.00134 * 61.29284 * 5 2 1 7 7 N 1.30322 * 120.00174 * 0.67090 * 6 5 2 8 8 N 1.37691 * 120.00397 * 180.66704 * 6 5 2 9 9 C 1.39109 * 120.00030 * 185.52967 * 8 6 5 10 10 C 1.39515 * 119.83680 * 33.70368 * 9 8 6 11 11 C 1.36357 * 120.16522 * 180.27645 * 10 9 8 12 12 C 1.40882 * 119.83136 * 359.44681 * 11 10 9 13 13 C 1.41140 * 120.16378 * 180.25549 * 12 11 10 14 14 H 1.07997 * 120.00191 * 209.40009 * 13 12 11 15 15 C 1.39881 * 119.99859 * 29.39903 * 13 12 11 16 16 N 1.30899 * 119.99558 * 10.43564 * 15 13 12 17 17 Si 1.86796 * 119.99985 * 190.43311 * 15 13 12 18 18 H 1.48503 * 109.47289 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47231 * 120.00556 * 17 15 13 20 20 H 1.48505 * 109.46912 * 239.99891 * 17 15 13 21 21 C 1.40888 * 119.67655 * 0.56968 * 12 11 10 22 22 C 1.36351 * 119.82852 * 359.70839 * 21 12 11 23 23 H 1.09001 * 109.46747 * 308.45826 * 1 2 3 24 24 H 1.09001 * 109.46764 * 68.45173 * 1 2 3 25 25 H 1.08995 * 109.47032 * 188.45364 * 1 2 3 26 26 H 1.08999 * 109.47718 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47366 * 299.99778 * 3 2 1 28 28 H 1.09006 * 109.47575 * 59.99558 * 3 2 1 29 29 H 1.09001 * 109.47714 * 306.10976 * 4 2 1 30 30 H 1.09002 * 109.46899 * 66.10914 * 4 2 1 31 31 H 1.09001 * 109.47708 * 186.10841 * 4 2 1 32 32 H 0.96996 * 120.00335 * 241.29731 * 5 2 1 33 33 H 0.97010 * 119.99829 * 353.87855 * 7 6 5 34 34 H 0.97001 * 119.99826 * 5.52944 * 8 6 5 35 35 H 1.07997 * 119.92257 * 359.97438 * 10 9 8 36 36 H 1.07997 * 120.08575 * 179.72114 * 11 10 9 37 37 H 0.97003 * 119.99105 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.08036 * 179.68529 * 21 12 11 39 39 H 1.08006 * 119.90977 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1962 6 6 1.7082 -2.0146 1.4006 7 7 0.9909 -2.6587 0.5237 8 7 2.1556 -2.6599 2.5316 9 6 1.9410 -4.0259 2.6838 10 6 1.9522 -4.8592 1.5650 11 6 1.7371 -6.1983 1.7058 12 6 1.5146 -6.7415 2.9865 13 6 1.2965 -8.1274 3.1409 14 1 0.6858 -8.4906 3.9543 15 6 1.8713 -9.0305 2.2406 16 7 2.7703 -8.6173 1.3835 17 14 1.3561 -10.8259 2.2614 18 1 0.3327 -11.0350 3.3170 19 1 0.7871 -11.1929 0.9398 20 1 2.5396 -11.6771 2.5444 21 6 1.5043 -5.8937 4.1116 22 6 1.7153 -4.5557 3.9546 23 1 -0.3633 0.6392 0.8047 24 1 -0.3633 0.3775 -0.9559 25 1 -0.3633 -1.0165 0.1511 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.5902 -1.7126 -1.3055 30 1 1.7687 -0.1483 -2.1358 31 1 3.1245 -0.8170 -1.1962 32 1 2.5603 -0.2139 1.8442 33 1 0.6014 -2.1838 -0.2273 34 1 2.6204 -2.1620 3.2222 35 1 2.1269 -4.4421 0.5843 36 1 1.7416 -6.8416 0.8383 37 1 3.1692 -9.2437 0.7593 38 1 1.3294 -6.3024 5.0959 39 1 1.7073 -3.9045 4.8162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310099938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:56 Heat of formation + Delta-G solvation = 52.826851 kcal Electronic energy + Delta-G solvation = -19305.394606 eV Core-core repulsion = 16441.041951 eV Total energy + Delta-G solvation = -2864.352654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73862 -39.40240 -37.05450 -35.12298 -33.13990 -31.97856 -31.13364 -30.28541 -28.25880 -28.02729 -26.55872 -23.20981 -22.89626 -21.36446 -20.67303 -19.12602 -18.79222 -17.71701 -16.94675 -16.31933 -16.25735 -15.64152 -15.48770 -15.06725 -14.51394 -14.28445 -14.19382 -13.77958 -13.52192 -13.31199 -13.08762 -13.02510 -12.85233 -12.74764 -12.69659 -12.51211 -12.31078 -11.96802 -11.94003 -11.53996 -11.25382 -11.01470 -10.27810 -9.80989 -9.23490 -9.08593 -8.53516 -8.30478 -6.16355 1.01531 1.28624 1.40768 1.51881 1.55975 1.96618 2.25880 2.29222 2.90501 3.20967 3.81319 3.87780 3.95585 4.09075 4.53810 4.63276 4.64945 4.66352 4.71986 4.79075 4.83147 4.89947 4.94518 5.16830 5.19571 5.26751 5.30190 5.33370 5.39468 5.51508 5.68125 5.80781 5.93687 6.05135 6.22795 6.35104 6.51007 6.73244 6.86632 7.06337 7.17854 7.28101 8.10471 8.48621 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039142 B = 0.004133 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.178490 B = 6773.834352 C = 7160.712263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.176 3.824 3 C -0.141 4.141 4 C -0.175 4.175 5 N -0.756 5.756 6 C 0.629 3.371 7 N -0.855 5.855 8 N -0.651 5.651 9 C 0.063 3.937 10 C -0.089 4.089 11 C -0.169 4.169 12 C 0.064 3.936 13 C -0.501 4.501 14 H 0.072 0.928 15 C 0.028 3.972 16 N -0.841 5.841 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.219 4.219 22 C -0.120 4.120 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.399 0.601 33 H 0.343 0.657 34 H 0.414 0.586 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.282 0.718 38 H 0.103 0.897 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 17.981 -2.425 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.089 3.911 3 C -0.199 4.199 4 C -0.233 4.233 5 N -0.403 5.403 6 C 0.262 3.738 7 N -0.509 5.509 8 N -0.286 5.286 9 C -0.032 4.032 10 C -0.110 4.110 11 C -0.190 4.190 12 C 0.061 3.939 13 C -0.532 4.532 14 H 0.091 0.909 15 C -0.184 4.184 16 N -0.469 5.469 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.193 1.193 20 H -0.191 1.191 21 C -0.239 4.239 22 C -0.141 4.141 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.234 0.766 33 H 0.167 0.833 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.176 16.890 -2.893 17.137 hybrid contribution 0.336 0.190 0.043 0.388 sum 0.160 17.080 -2.851 17.317 Atomic orbital electron populations 1.22459 0.95181 1.02226 1.03505 1.20341 0.93542 0.93438 0.83731 1.21964 1.01917 0.91873 1.04103 1.22482 1.01375 1.01234 0.98251 1.45551 1.59645 1.08513 1.26569 1.18822 0.87736 0.79997 0.87222 1.70091 1.27795 1.39299 1.13743 1.40789 1.62267 1.06227 1.19319 1.16994 1.10770 0.81980 0.93465 1.20537 1.00215 0.92452 0.97781 1.20904 1.07050 0.93771 0.97241 1.17957 0.90545 0.93821 0.91538 1.19743 1.29348 0.91940 1.12190 0.90941 1.26718 0.92807 1.05632 0.93234 1.69934 1.21311 1.38420 1.17252 0.85147 0.79082 0.76198 0.79126 1.18175 1.19334 1.19141 1.20767 1.12002 0.93961 0.97191 1.20309 1.03196 0.95206 0.95412 0.91639 0.89739 0.93632 0.91432 0.89301 0.91061 0.93322 0.89467 0.92828 0.76602 0.83349 0.74938 0.87545 0.88858 0.90776 0.87904 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 8.33 71.98 0.60 -2.84 16 2 C 0.18 3.28 1.06 3.60 0.00 3.28 16 3 C -0.14 -1.61 8.58 71.98 0.62 -0.99 16 4 C -0.17 -3.68 8.26 71.98 0.59 -3.09 16 5 N -0.76 -16.98 5.20 -308.99 -1.61 -18.58 16 6 C 0.63 20.64 7.83 260.43 2.04 22.68 16 7 N -0.85 -32.95 9.35 -58.39 -0.55 -33.50 16 8 N -0.65 -22.32 5.42 -188.78 -1.02 -23.34 16 9 C 0.06 2.81 6.29 38.60 0.24 3.05 16 10 C -0.09 -4.59 8.50 22.14 0.19 -4.40 16 11 C -0.17 -9.74 8.60 22.48 0.19 -9.55 16 12 C 0.06 3.66 5.55 -21.27 -0.12 3.54 16 13 C -0.50 -28.69 9.04 23.38 0.21 -28.48 16 14 H 0.07 3.99 7.87 -2.91 -0.02 3.96 16 15 C 0.03 1.51 5.25 85.23 0.45 1.95 16 16 N -0.84 -47.29 10.86 21.82 0.24 -47.05 16 17 Si 0.98 40.94 29.57 68.60 2.03 42.97 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 C -0.22 -11.08 9.74 22.48 0.22 -10.86 16 22 C -0.12 -5.31 9.89 22.14 0.22 -5.09 16 23 H 0.06 1.18 8.13 -2.39 -0.02 1.17 16 24 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 25 H 0.04 1.21 5.24 -2.39 -0.01 1.20 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.05 1.33 5.21 -2.39 -0.01 1.32 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.40 6.83 8.58 -92.71 -0.80 6.04 16 33 H 0.34 11.78 3.32 -92.70 -0.31 11.47 16 34 H 0.41 10.90 8.92 -92.71 -0.83 10.08 16 35 H 0.11 5.51 6.29 -2.91 -0.02 5.49 16 36 H 0.09 5.72 6.25 -2.91 -0.02 5.70 16 37 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 38 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -68.38 311.67 3.70 -64.68 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: -0.85 Total: 45.62 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 5.46 Total: -30.79 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -2.94 Total: -122.48 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -68.38 3.70 -64.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310099938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.505 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds