Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00178 * 2 1 4 4 H 1.09002 * 110.53871 * 332.61367 * 3 2 1 5 5 C 1.54885 * 110.48412 * 95.22413 * 3 2 1 6 6 C 1.54892 * 102.74828 * 156.61995 * 5 3 2 7 7 C 1.54269 * 104.19641 * 322.05882 * 6 5 3 8 8 C 1.53881 * 106.59673 * 23.60591 * 7 6 5 9 9 H 1.09001 * 110.02587 * 119.33336 * 8 7 6 10 10 N 1.46492 * 110.03331 * 240.71426 * 8 7 6 11 11 C 1.38851 * 120.00520 * 273.54892 * 10 8 7 12 12 C 1.39567 * 119.84738 * 179.97438 * 11 10 8 13 13 C 1.36340 * 120.16318 * 179.72458 * 12 11 10 14 14 C 1.40889 * 119.83412 * 0.25363 * 13 12 11 15 15 C 1.41136 * 120.14982 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00606 * 334.55457 * 15 14 13 17 17 C 1.39866 * 119.99495 * 154.55731 * 15 14 13 18 18 N 1.30896 * 120.00324 * 343.02945 * 17 15 14 19 19 Si 1.86799 * 119.99806 * 163.02868 * 17 15 14 20 20 H 1.48494 * 109.47448 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47203 * 119.99836 * 19 17 15 22 22 H 1.48506 * 109.47498 * 239.99870 * 19 17 15 23 23 C 1.40884 * 119.69266 * 0.02562 * 14 13 12 24 24 C 1.36346 * 119.83328 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.47445 * 60.00214 * 1 2 3 26 26 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47206 * 300.00289 * 1 2 3 28 28 H 1.09000 * 110.75957 * 38.31108 * 5 3 2 29 29 H 1.09005 * 110.75770 * 274.93490 * 5 3 2 30 30 H 1.08994 * 110.48928 * 203.37986 * 6 5 3 31 31 H 1.09005 * 110.59875 * 80.78780 * 6 5 3 32 32 H 1.08999 * 110.02850 * 264.32329 * 7 6 5 33 33 H 1.08995 * 110.07309 * 142.91345 * 7 6 5 34 34 H 0.97004 * 119.99797 * 93.54536 * 10 8 7 35 35 H 1.08002 * 119.91560 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.07913 * 180.27841 * 13 12 11 37 37 H 0.97001 * 120.00473 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.08421 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.91651 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0235 -0.4695 5 6 2.3514 1.7468 1.4449 6 6 3.4601 2.8061 1.2259 7 6 4.2950 2.2437 0.0569 8 6 3.3731 1.2895 -0.7225 9 1 3.2566 1.6383 -1.7487 10 7 3.9302 -0.0653 -0.7135 11 6 4.8553 -0.4421 -1.6780 12 6 5.3843 -1.7336 -1.6660 13 6 6.2889 -2.1122 -2.6132 14 6 6.6934 -1.1944 -3.6026 15 6 7.6297 -1.5790 -4.5861 16 1 8.3330 -2.3726 -4.3811 17 6 7.6469 -0.9324 -5.8262 18 7 6.6166 -0.2207 -6.2075 19 14 9.1401 -1.0844 -6.9381 20 1 10.1619 -1.9383 -6.2810 21 1 8.7364 -1.7002 -8.2278 22 1 9.7091 0.2640 -7.1902 23 6 6.1596 0.1094 -3.6051 24 6 5.2558 0.4742 -2.6516 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.7299 0.9062 2.0265 29 1 1.4818 2.1921 1.9283 30 1 4.0748 2.9055 2.1205 31 1 3.0238 3.7676 0.9551 32 1 5.1568 1.6987 0.4419 33 1 4.6258 3.0554 -0.5910 34 1 3.6528 -0.6992 -0.0337 35 1 5.0727 -2.4363 -0.9073 36 1 6.6940 -3.1133 -2.6053 37 1 6.6287 0.2281 -7.0674 38 1 6.4655 0.8182 -4.3603 39 1 4.8455 1.4732 -2.6525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310496410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = -27.661619 kcal Electronic energy + Delta-G solvation = -19428.583810 eV Core-core repulsion = 16528.448163 eV Total energy + Delta-G solvation = -2900.135647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.34417 -37.56212 -36.04541 -34.07341 -32.38910 -29.40758 -28.90477 -28.21012 -26.99288 -25.90222 -24.04597 -21.30276 -20.64927 -20.52425 -19.21835 -17.14442 -16.95072 -16.45824 -15.24166 -15.00986 -14.94436 -14.75017 -14.05259 -13.66755 -13.63609 -12.95002 -12.60673 -12.48019 -12.08600 -11.99575 -11.60442 -11.47963 -11.28711 -11.12659 -11.04584 -10.95895 -10.77215 -10.59561 -10.49830 -10.38030 -9.60805 -9.48571 -9.19131 -9.12764 -8.43822 -7.40529 -6.55559 -6.25940 -3.95369 2.96484 3.17748 3.19845 3.25045 3.42122 3.68739 4.11334 4.51182 4.58689 4.67650 4.86434 5.03125 5.14911 5.28236 5.30441 5.54522 5.59106 5.63889 5.65783 5.79552 5.86164 5.91563 6.02890 6.12335 6.27895 6.37319 6.42809 6.51659 7.00978 7.02538 7.23076 7.28943 7.44451 7.66862 7.78372 7.95045 8.23349 8.39687 8.61570 8.83086 8.94797 9.14076 9.24570 10.45624 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.004337 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.727402 B = 6454.434785 C = 6655.779369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.075 3.925 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.142 4.142 8 C 0.164 3.836 9 H 0.076 0.924 10 N -0.740 5.740 11 C 0.102 3.898 12 C -0.162 4.162 13 C -0.184 4.184 14 C 0.071 3.929 15 C -0.468 4.468 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.812 5.812 19 Si 0.901 3.099 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.275 1.275 23 C -0.121 4.121 24 C -0.169 4.169 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.390 0.610 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.274 0.726 38 H 0.117 0.883 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 5.790 10.932 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.181 4.181 6 C -0.159 4.159 7 C -0.181 4.181 8 C 0.056 3.944 9 H 0.094 0.906 10 N -0.374 5.374 11 C 0.005 3.995 12 C -0.184 4.184 13 C -0.204 4.204 14 C 0.068 3.932 15 C -0.499 4.499 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.440 5.440 19 Si 0.726 3.274 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.141 4.141 24 C -0.190 4.190 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.223 0.777 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.145 5.911 10.642 15.225 hybrid contribution 0.215 0.008 -0.414 0.466 sum -8.930 5.918 10.228 14.812 Atomic orbital electron populations 1.22754 0.81656 1.02555 0.99460 1.87934 1.18968 1.27048 1.94818 1.23352 0.94839 0.84770 0.95466 0.91204 1.22952 0.98627 0.99344 0.97140 1.22236 0.97042 0.97747 0.98864 1.22790 0.99247 0.99173 0.96917 1.21272 0.89493 0.85304 0.98297 0.90622 1.43683 1.48392 1.11546 1.33813 1.17383 0.95459 0.94096 0.92589 1.19801 1.02827 0.94288 1.01495 1.20554 1.02100 0.98087 0.99639 1.17480 0.92755 0.90840 0.92144 1.19381 1.15728 1.17434 0.97368 0.91039 1.25764 0.96038 0.93852 0.98349 1.69861 1.27601 1.26364 1.20134 0.86390 0.82522 0.78749 0.79714 1.18690 1.20354 1.20048 1.20920 0.98768 0.96623 0.97826 1.20096 1.03433 0.97423 0.98090 0.94221 0.89830 0.94528 0.90530 0.91941 0.91614 0.91820 0.90453 0.91615 0.77659 0.89643 0.89169 0.91529 0.86531 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 101.05 1.10 1.43 16 2 O -0.37 -5.14 9.10 -35.23 -0.32 -5.46 16 3 C 0.07 0.95 3.24 -25.08 -0.08 0.87 16 4 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 5 C -0.14 -1.55 6.62 -24.74 -0.16 -1.71 16 6 C -0.12 -1.29 6.83 -25.07 -0.17 -1.47 16 7 C -0.14 -1.94 6.58 -25.61 -0.17 -2.11 16 8 C 0.16 2.54 2.82 -66.81 -0.19 2.35 16 9 H 0.08 1.28 6.49 -51.93 -0.34 0.94 16 10 N -0.74 -13.59 4.73 -50.96 -0.24 -13.83 16 11 C 0.10 2.29 6.66 -83.69 -0.56 1.73 16 12 C -0.16 -3.78 9.82 -39.77 -0.39 -4.17 16 13 C -0.18 -4.69 9.74 -39.26 -0.38 -5.07 16 14 C 0.07 1.96 5.57 -106.79 -0.59 1.36 16 15 C -0.47 -13.02 9.03 -37.87 -0.34 -13.36 16 16 H 0.07 1.93 7.90 -52.49 -0.41 1.52 16 17 C 0.07 1.96 5.14 -17.34 -0.09 1.87 16 18 N -0.81 -22.05 10.96 55.54 0.61 -21.44 16 19 Si 0.90 19.65 29.59 -169.99 -5.03 14.62 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 24 C -0.17 -4.02 9.13 -39.77 -0.36 -4.38 16 25 H 0.04 0.39 8.11 -51.93 -0.42 -0.04 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 6.89 7.82 -40.82 -0.32 6.57 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.27 6.80 8.30 -40.82 -0.34 6.46 16 38 H 0.12 3.24 6.19 -52.49 -0.32 2.91 16 39 H 0.09 1.89 6.21 -52.49 -0.33 1.56 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -29.11 316.25 -8.85 -37.96 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.90 Total: 9.63 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.74 Total: -26.25 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.37 Total: -35.27 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.32 Total: -5.46 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.11 -8.85 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310496410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.302 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds