Wall clock time and date at job start Mon Mar 30 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00178 * 2 1 4 4 H 1.09002 * 110.53871 * 332.61367 * 3 2 1 5 5 C 1.54885 * 110.48412 * 95.22413 * 3 2 1 6 6 C 1.54892 * 102.74828 * 156.61995 * 5 3 2 7 7 C 1.54269 * 104.19641 * 322.05882 * 6 5 3 8 8 C 1.53881 * 106.59673 * 23.60591 * 7 6 5 9 9 H 1.09001 * 110.02587 * 119.33336 * 8 7 6 10 10 N 1.46492 * 110.03331 * 240.71426 * 8 7 6 11 11 C 1.38851 * 120.00520 * 273.54892 * 10 8 7 12 12 C 1.39567 * 119.84738 * 179.97438 * 11 10 8 13 13 C 1.36340 * 120.16318 * 179.72458 * 12 11 10 14 14 C 1.40889 * 119.83412 * 0.25363 * 13 12 11 15 15 C 1.41136 * 120.14982 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00606 * 334.55457 * 15 14 13 17 17 C 1.39866 * 119.99495 * 154.55731 * 15 14 13 18 18 N 1.30896 * 120.00324 * 343.02945 * 17 15 14 19 19 Si 1.86799 * 119.99806 * 163.02868 * 17 15 14 20 20 H 1.48494 * 109.47448 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47203 * 119.99836 * 19 17 15 22 22 H 1.48506 * 109.47498 * 239.99870 * 19 17 15 23 23 C 1.40884 * 119.69266 * 0.02562 * 14 13 12 24 24 C 1.36346 * 119.83328 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.47445 * 60.00214 * 1 2 3 26 26 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47206 * 300.00289 * 1 2 3 28 28 H 1.09000 * 110.75957 * 38.31108 * 5 3 2 29 29 H 1.09005 * 110.75770 * 274.93490 * 5 3 2 30 30 H 1.08994 * 110.48928 * 203.37986 * 6 5 3 31 31 H 1.09005 * 110.59875 * 80.78780 * 6 5 3 32 32 H 1.08999 * 110.02850 * 264.32329 * 7 6 5 33 33 H 1.08995 * 110.07309 * 142.91345 * 7 6 5 34 34 H 0.97004 * 119.99797 * 93.54536 * 10 8 7 35 35 H 1.08002 * 119.91560 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.07913 * 180.27841 * 13 12 11 37 37 H 0.97001 * 120.00473 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.08421 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.91651 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0235 -0.4695 5 6 2.3514 1.7468 1.4449 6 6 3.4601 2.8061 1.2259 7 6 4.2950 2.2437 0.0569 8 6 3.3731 1.2895 -0.7225 9 1 3.2566 1.6383 -1.7487 10 7 3.9302 -0.0653 -0.7135 11 6 4.8553 -0.4421 -1.6780 12 6 5.3843 -1.7336 -1.6660 13 6 6.2889 -2.1122 -2.6132 14 6 6.6934 -1.1944 -3.6026 15 6 7.6297 -1.5790 -4.5861 16 1 8.3330 -2.3726 -4.3811 17 6 7.6469 -0.9324 -5.8262 18 7 6.6166 -0.2207 -6.2075 19 14 9.1401 -1.0844 -6.9381 20 1 10.1619 -1.9383 -6.2810 21 1 8.7364 -1.7002 -8.2278 22 1 9.7091 0.2640 -7.1902 23 6 6.1596 0.1094 -3.6051 24 6 5.2558 0.4742 -2.6516 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.7299 0.9062 2.0265 29 1 1.4818 2.1921 1.9283 30 1 4.0748 2.9055 2.1205 31 1 3.0238 3.7676 0.9551 32 1 5.1568 1.6987 0.4419 33 1 4.6258 3.0554 -0.5910 34 1 3.6528 -0.6992 -0.0337 35 1 5.0727 -2.4363 -0.9073 36 1 6.6940 -3.1133 -2.6053 37 1 6.6287 0.2281 -7.0674 38 1 6.4655 0.8182 -4.3603 39 1 4.8455 1.4732 -2.6525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310496410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:24 Heat of formation + Delta-G solvation = -43.961737 kcal Electronic energy + Delta-G solvation = -19429.290636 eV Core-core repulsion = 16528.448163 eV Total energy + Delta-G solvation = -2900.842474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55305 -39.25560 -37.20278 -35.78534 -34.10552 -31.34593 -30.61425 -29.18075 -28.36740 -26.85573 -25.87458 -23.09130 -22.28493 -21.59091 -20.61488 -19.13551 -18.30377 -17.67554 -16.83826 -16.39574 -16.23160 -15.88352 -15.56542 -15.11724 -14.69042 -14.43642 -14.35105 -13.93690 -13.83046 -13.49542 -13.28423 -12.90195 -12.73800 -12.47303 -12.34519 -12.21290 -12.09773 -11.97626 -11.83839 -11.53914 -11.45731 -11.13793 -11.01764 -10.42884 -10.22807 -9.38205 -8.51903 -8.09086 -5.98222 1.12422 1.20457 1.40522 1.55159 1.59423 2.28952 2.63630 2.86990 3.18218 3.59778 3.70373 3.89186 4.09582 4.27407 4.38690 4.46847 4.50460 4.52975 4.59224 4.62563 4.69157 4.79075 4.89056 4.99697 5.04699 5.07417 5.17090 5.20763 5.27173 5.30117 5.45357 5.48281 5.72826 5.83644 5.99362 6.20939 6.29928 6.43446 6.72238 6.93501 7.10878 7.20603 7.39073 8.51556 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.004337 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.727402 B = 6454.434785 C = 6655.779369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.088 0.912 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.139 4.139 8 C 0.152 3.848 9 H 0.058 0.942 10 N -0.731 5.731 11 C 0.122 3.878 12 C -0.171 4.171 13 C -0.193 4.193 14 C 0.032 3.968 15 C -0.507 4.507 16 H 0.066 0.934 17 C 0.031 3.969 18 N -0.846 5.846 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.266 1.266 23 C -0.139 4.139 24 C -0.176 4.176 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.281 0.719 38 H 0.098 0.902 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 6.669 12.312 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.019 3.981 4 H 0.106 0.894 5 C -0.172 4.172 6 C -0.150 4.150 7 C -0.179 4.179 8 C 0.045 3.955 9 H 0.076 0.924 10 N -0.364 5.364 11 C 0.022 3.978 12 C -0.194 4.194 13 C -0.213 4.213 14 C 0.029 3.971 15 C -0.538 4.538 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.474 5.474 19 Si 0.798 3.202 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.191 1.191 23 C -0.159 4.159 24 C -0.198 4.198 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.349 6.804 12.065 17.291 hybrid contribution 0.417 -0.253 -0.708 0.859 sum -9.933 6.551 11.358 16.449 Atomic orbital electron populations 1.22929 0.79854 1.03440 1.00656 1.87881 1.21017 1.27724 1.95046 1.23360 0.93269 0.85022 0.96425 0.89417 1.22905 0.99508 0.99051 0.95738 1.22220 0.96613 0.98412 0.97732 1.22691 0.98626 0.98576 0.97995 1.21550 0.91840 0.83794 0.98310 0.92366 1.43734 1.47023 1.13076 1.32533 1.17487 0.94723 0.93387 0.92217 1.20072 1.02359 0.95262 1.01665 1.20749 1.02567 0.98155 0.99801 1.17800 0.94128 0.91759 0.93435 1.19601 1.16745 1.18765 0.98701 0.91566 1.26595 0.98840 0.93130 0.99410 1.69924 1.29353 1.27191 1.20978 0.85249 0.78346 0.79028 0.77543 1.18474 1.19377 1.19083 1.20852 1.00217 0.96297 0.98547 1.20225 1.03070 0.98619 0.97912 0.93867 0.89252 0.92418 0.91458 0.89357 0.90586 0.89820 0.92543 0.91560 0.76941 0.86976 0.88664 0.90859 0.88373 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 113.37 1.23 1.72 16 2 O -0.40 -10.12 9.10 -148.98 -1.36 -11.48 16 3 C 0.08 1.76 3.24 31.67 0.10 1.87 16 4 H 0.09 1.68 7.82 -2.39 -0.02 1.66 16 5 C -0.13 -2.44 6.62 31.88 0.21 -2.23 16 6 C -0.11 -2.03 6.83 31.67 0.22 -1.81 16 7 C -0.14 -3.60 6.58 31.32 0.21 -3.39 16 8 C 0.15 4.47 2.82 45.72 0.13 4.60 16 9 H 0.06 1.92 6.49 -2.39 -0.02 1.90 16 10 N -0.73 -25.97 4.73 -315.13 -1.49 -27.46 16 11 C 0.12 5.44 6.66 38.67 0.26 5.70 16 12 C -0.17 -7.95 9.82 22.15 0.22 -7.74 16 13 C -0.19 -10.07 9.74 22.48 0.22 -9.85 16 14 C 0.03 1.82 5.57 -21.27 -0.12 1.70 16 15 C -0.51 -29.34 9.03 23.38 0.21 -29.13 16 16 H 0.07 3.73 7.90 -2.91 -0.02 3.71 16 17 C 0.03 1.70 5.14 85.23 0.44 2.14 16 18 N -0.85 -47.37 10.96 21.82 0.24 -47.13 16 19 Si 0.98 41.10 29.59 68.60 2.03 43.13 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 C -0.14 -7.74 8.63 22.48 0.19 -7.54 16 24 C -0.18 -8.54 9.13 22.15 0.20 -8.33 16 25 H 0.04 0.73 8.11 -2.38 -0.02 0.71 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.69 7.92 -2.39 -0.02 1.67 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.40 13.34 7.82 -92.71 -0.73 12.62 16 35 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.28 14.28 8.30 -92.71 -0.77 13.51 16 38 H 0.10 5.73 6.19 -2.91 -0.02 5.71 16 39 H 0.10 4.57 6.21 -2.91 -0.02 4.55 16 Total: -1.00 -64.72 316.25 3.45 -61.27 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.31 Total: 33.97 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 3.72 Total: -52.29 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.25 Total: -74.60 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.36 Total: -11.48 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -64.72 3.45 -61.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310496410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.311 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds