Wall clock time and date at job start Mon Mar 30 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00016 * 2 1 4 4 H 1.09006 * 110.43522 * 27.45875 * 3 2 1 5 5 C 1.54891 * 110.48429 * 264.77433 * 3 2 1 6 6 C 1.54886 * 102.74703 * 203.37927 * 5 3 2 7 7 C 1.54263 * 104.19607 * 37.94114 * 6 5 3 8 8 C 1.53872 * 106.60121 * 336.39164 * 7 6 5 9 9 H 1.08996 * 110.07344 * 119.30303 * 8 7 6 10 10 N 1.46495 * 110.03411 * 240.71448 * 8 7 6 11 11 C 1.38857 * 120.00260 * 272.16469 * 10 8 7 12 12 C 1.39564 * 119.84770 * 179.97438 * 11 10 8 13 13 C 1.36336 * 120.16597 * 180.02562 * 12 11 10 14 14 C 1.40888 * 119.83205 * 359.97438 * 13 12 11 15 15 C 1.41143 * 120.15282 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99863 * 334.94003 * 15 14 13 17 17 C 1.39864 * 120.00081 * 154.94542 * 15 14 13 18 18 N 1.30909 * 119.99520 * 342.57001 * 17 15 14 19 19 Si 1.86797 * 120.00333 * 162.57481 * 17 15 14 20 20 H 1.48493 * 109.46910 * 265.59230 * 19 17 15 21 21 H 1.48499 * 109.47010 * 25.59284 * 19 17 15 22 22 H 1.48502 * 109.47199 * 145.59216 * 19 17 15 23 23 C 1.40886 * 119.69001 * 0.25910 * 14 13 12 24 24 C 1.36332 * 119.83732 * 359.45967 * 23 14 13 25 25 H 1.08997 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47115 * 300.00117 * 1 2 3 27 27 H 1.09003 * 109.47429 * 60.00039 * 1 2 3 28 28 H 1.08995 * 110.75996 * 321.69565 * 5 3 2 29 29 H 1.09002 * 110.75520 * 84.88085 * 5 3 2 30 30 H 1.09000 * 110.48839 * 156.62202 * 6 5 3 31 31 H 1.09005 * 110.48627 * 279.13628 * 6 5 3 32 32 H 1.09005 * 110.03409 * 217.10449 * 7 6 5 33 33 H 1.09007 * 110.03078 * 95.67351 * 7 6 5 34 34 H 0.96999 * 120.00217 * 92.16103 * 10 8 7 35 35 H 1.07999 * 119.91718 * 359.97438 * 12 11 10 36 36 H 1.07998 * 120.08399 * 180.02562 * 13 12 11 37 37 H 0.97003 * 119.99839 * 180.02562 * 18 17 15 38 38 H 1.08008 * 120.07696 * 179.72063 * 23 14 13 39 39 H 1.08002 * 119.92474 * 180.28101 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3370 2.0218 0.4710 5 6 2.3515 1.7469 -1.4449 6 6 3.4601 2.8061 -1.2259 7 6 4.2949 2.2438 -0.0569 8 6 3.3731 1.2896 0.7225 9 1 3.7872 0.2814 0.7165 10 7 3.2156 1.7588 2.1013 11 6 4.1221 1.3651 3.0767 12 6 3.9692 1.8144 4.3891 13 6 4.8558 1.4323 5.3518 14 6 5.9280 0.5811 5.0190 15 6 6.8501 0.1816 6.0101 16 1 7.0037 0.7970 6.8841 17 6 7.5650 -1.0111 5.8602 18 7 7.1560 -1.9166 5.0078 19 14 9.1032 -1.3122 6.8763 20 1 10.2987 -0.8975 6.0993 21 1 9.0299 -0.5218 8.1314 22 1 9.2038 -2.7566 7.2061 23 6 6.0789 0.1353 3.6910 24 6 5.1815 0.5210 2.7400 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.7298 0.9063 -2.0265 29 1 1.4810 2.1892 -1.9294 30 1 4.0748 2.9056 -2.1205 31 1 3.0217 3.7671 -0.9566 32 1 4.6251 3.0561 0.5908 33 1 5.1568 1.6987 -0.4419 34 1 2.4780 2.3447 2.3330 35 1 3.1470 2.4672 4.6426 36 1 4.7360 1.7804 6.3670 37 1 7.6516 -2.7440 4.9040 38 1 6.9012 -0.5137 3.4280 39 1 5.2932 0.1764 1.7225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310496420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:28 Heat of formation + Delta-G solvation = -30.120484 kcal Electronic energy + Delta-G solvation = -19333.929298 eV Core-core repulsion = 16433.687026 eV Total energy + Delta-G solvation = -2900.242272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31625 -37.63630 -36.09633 -34.15046 -32.49386 -29.44280 -28.95729 -28.22306 -27.04786 -25.82285 -23.99922 -21.50980 -20.71306 -20.41086 -19.36148 -17.18707 -17.05868 -16.21153 -15.63945 -15.12495 -14.90909 -14.56437 -14.05795 -13.72689 -13.51940 -12.85404 -12.63316 -12.52600 -12.18352 -12.05446 -11.83798 -11.51799 -11.34252 -11.16397 -11.05019 -11.01051 -10.72059 -10.60719 -10.42891 -10.37433 -9.64567 -9.58615 -9.22441 -9.15094 -8.49830 -7.44248 -6.59244 -6.33602 -3.99370 2.95089 3.14773 3.18312 3.21867 3.39359 3.71033 4.09119 4.31937 4.57793 4.78405 4.84722 4.99310 5.14554 5.28586 5.29993 5.52215 5.56195 5.63618 5.66915 5.75850 5.84609 5.91429 6.01687 6.11431 6.30913 6.34297 6.38494 6.44884 6.98159 6.99337 7.24238 7.26029 7.40155 7.60741 7.73865 7.88848 8.20145 8.33794 8.54038 8.74298 8.84586 9.10633 9.19890 10.42470 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.004265 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.699227 B = 6562.755606 C = 6609.232422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.077 3.923 4 H 0.067 0.933 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.138 4.138 8 C 0.161 3.839 9 H 0.088 0.912 10 N -0.753 5.753 11 C 0.095 3.905 12 C -0.160 4.160 13 C -0.187 4.187 14 C 0.074 3.926 15 C -0.468 4.468 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.808 5.808 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.264 1.264 22 H -0.280 1.280 23 C -0.123 4.123 24 C -0.162 4.162 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.381 0.619 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.276 0.724 38 H 0.117 0.883 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 5.543 -11.172 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C 0.019 3.981 4 H 0.085 0.915 5 C -0.181 4.181 6 C -0.158 4.158 7 C -0.178 4.178 8 C 0.054 3.946 9 H 0.106 0.894 10 N -0.387 5.387 11 C -0.002 4.002 12 C -0.182 4.182 13 C -0.207 4.207 14 C 0.071 3.929 15 C -0.499 4.499 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.436 5.436 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.189 1.189 22 H -0.206 1.206 23 C -0.143 4.143 24 C -0.183 4.183 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.213 0.787 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.336 5.019 -11.353 14.952 hybrid contribution 0.130 0.149 0.535 0.571 sum -8.206 5.168 -10.818 14.528 Atomic orbital electron populations 1.22749 0.81542 1.02580 0.99542 1.87967 1.19240 1.27428 1.94841 1.23322 0.95076 0.84512 0.95222 0.91510 1.22903 0.98885 0.99465 0.96845 1.22257 0.96973 0.97907 0.98704 1.22689 0.98325 0.99957 0.96835 1.21224 0.92440 0.98551 0.82403 0.89417 1.43965 1.31968 1.57176 1.05614 1.17333 0.93503 1.01144 0.88207 1.19788 1.01190 1.05043 0.92180 1.20533 0.97156 1.06174 0.96873 1.17494 0.91332 0.91635 0.92392 1.19377 1.19751 1.04956 1.05861 0.90984 1.25787 0.97769 0.95315 0.95154 1.69865 1.35990 1.05890 1.31845 0.86400 0.82247 0.77865 0.80698 1.19639 1.18851 1.20580 1.20932 0.99284 1.01836 0.92261 1.20118 0.97424 1.02418 0.98367 0.89807 0.94136 0.94466 0.90356 0.91726 0.91570 0.91779 0.90578 0.91432 0.78658 0.89732 0.89130 0.91370 0.86481 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.44 16 2 O -0.38 -5.46 10.41 -35.23 -0.37 -5.83 16 3 C 0.08 1.01 3.05 -25.07 -0.08 0.94 16 4 H 0.07 0.81 7.41 -51.93 -0.38 0.42 16 5 C -0.14 -1.55 6.62 -24.74 -0.16 -1.71 16 6 C -0.12 -1.30 6.83 -25.08 -0.17 -1.47 16 7 C -0.14 -1.91 6.59 -25.62 -0.17 -2.08 16 8 C 0.16 2.53 2.68 -66.82 -0.18 2.35 16 9 H 0.09 1.61 6.32 -51.93 -0.33 1.28 16 10 N -0.75 -13.36 5.13 -50.96 -0.26 -13.62 16 11 C 0.09 2.10 6.67 -83.69 -0.56 1.54 16 12 C -0.16 -3.65 9.82 -39.77 -0.39 -4.04 16 13 C -0.19 -4.72 9.74 -39.26 -0.38 -5.11 16 14 C 0.07 2.05 5.57 -106.79 -0.59 1.45 16 15 C -0.47 -12.95 9.03 -37.87 -0.34 -13.29 16 16 H 0.07 1.93 7.90 -52.49 -0.41 1.51 16 17 C 0.07 1.96 5.14 -17.34 -0.09 1.87 16 18 N -0.81 -21.92 10.98 55.54 0.61 -21.31 16 19 Si 0.90 19.56 29.59 -169.99 -5.03 14.53 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 C -0.12 -3.29 8.63 -39.27 -0.34 -3.63 16 24 C -0.16 -3.87 9.14 -39.77 -0.36 -4.23 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 33 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.38 6.02 8.35 -40.82 -0.34 5.68 16 35 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 38 H 0.12 3.25 6.20 -52.48 -0.33 2.92 16 39 H 0.09 1.97 6.18 -52.49 -0.32 1.65 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -29.17 317.58 -8.88 -38.05 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.89 Total: 9.35 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -2.72 Total: -25.95 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.35 Total: -34.93 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.37 Total: -5.83 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.17 -8.88 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310496420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.926 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds