Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00016 * 2 1 4 4 H 1.09006 * 110.43522 * 27.45875 * 3 2 1 5 5 C 1.54891 * 110.48429 * 264.77433 * 3 2 1 6 6 C 1.54886 * 102.74703 * 203.37927 * 5 3 2 7 7 C 1.54263 * 104.19607 * 37.94114 * 6 5 3 8 8 C 1.53872 * 106.60121 * 336.39164 * 7 6 5 9 9 H 1.08996 * 110.07344 * 119.30303 * 8 7 6 10 10 N 1.46495 * 110.03411 * 240.71448 * 8 7 6 11 11 C 1.38857 * 120.00260 * 272.16469 * 10 8 7 12 12 C 1.39564 * 119.84770 * 179.97438 * 11 10 8 13 13 C 1.36336 * 120.16597 * 180.02562 * 12 11 10 14 14 C 1.40888 * 119.83205 * 359.97438 * 13 12 11 15 15 C 1.41143 * 120.15282 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99863 * 334.94003 * 15 14 13 17 17 C 1.39864 * 120.00081 * 154.94542 * 15 14 13 18 18 N 1.30909 * 119.99520 * 342.57001 * 17 15 14 19 19 Si 1.86797 * 120.00333 * 162.57481 * 17 15 14 20 20 H 1.48493 * 109.46910 * 265.59230 * 19 17 15 21 21 H 1.48499 * 109.47010 * 25.59284 * 19 17 15 22 22 H 1.48502 * 109.47199 * 145.59216 * 19 17 15 23 23 C 1.40886 * 119.69001 * 0.25910 * 14 13 12 24 24 C 1.36332 * 119.83732 * 359.45967 * 23 14 13 25 25 H 1.08997 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47115 * 300.00117 * 1 2 3 27 27 H 1.09003 * 109.47429 * 60.00039 * 1 2 3 28 28 H 1.08995 * 110.75996 * 321.69565 * 5 3 2 29 29 H 1.09002 * 110.75520 * 84.88085 * 5 3 2 30 30 H 1.09000 * 110.48839 * 156.62202 * 6 5 3 31 31 H 1.09005 * 110.48627 * 279.13628 * 6 5 3 32 32 H 1.09005 * 110.03409 * 217.10449 * 7 6 5 33 33 H 1.09007 * 110.03078 * 95.67351 * 7 6 5 34 34 H 0.96999 * 120.00217 * 92.16103 * 10 8 7 35 35 H 1.07999 * 119.91718 * 359.97438 * 12 11 10 36 36 H 1.07998 * 120.08399 * 180.02562 * 13 12 11 37 37 H 0.97003 * 119.99839 * 180.02562 * 18 17 15 38 38 H 1.08008 * 120.07696 * 179.72063 * 23 14 13 39 39 H 1.08002 * 119.92474 * 180.28101 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3370 2.0218 0.4710 5 6 2.3515 1.7469 -1.4449 6 6 3.4601 2.8061 -1.2259 7 6 4.2949 2.2438 -0.0569 8 6 3.3731 1.2896 0.7225 9 1 3.7872 0.2814 0.7165 10 7 3.2156 1.7588 2.1013 11 6 4.1221 1.3651 3.0767 12 6 3.9692 1.8144 4.3891 13 6 4.8558 1.4323 5.3518 14 6 5.9280 0.5811 5.0190 15 6 6.8501 0.1816 6.0101 16 1 7.0037 0.7970 6.8841 17 6 7.5650 -1.0111 5.8602 18 7 7.1560 -1.9166 5.0078 19 14 9.1032 -1.3122 6.8763 20 1 10.2987 -0.8975 6.0993 21 1 9.0299 -0.5218 8.1314 22 1 9.2038 -2.7566 7.2061 23 6 6.0789 0.1353 3.6910 24 6 5.1815 0.5210 2.7400 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.7298 0.9063 -2.0265 29 1 1.4810 2.1892 -1.9294 30 1 4.0748 2.9056 -2.1205 31 1 3.0217 3.7671 -0.9566 32 1 4.6251 3.0561 0.5908 33 1 5.1568 1.6987 -0.4419 34 1 2.4780 2.3447 2.3330 35 1 3.1470 2.4672 4.6426 36 1 4.7360 1.7804 6.3670 37 1 7.6516 -2.7440 4.9040 38 1 6.9012 -0.5137 3.4280 39 1 5.2932 0.1764 1.7225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310496420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = -46.949669 kcal Electronic energy + Delta-G solvation = -19334.659066 eV Core-core repulsion = 16433.687026 eV Total energy + Delta-G solvation = -2900.972040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54561 -39.30583 -37.30579 -35.82270 -34.20155 -31.37140 -30.68405 -29.20027 -28.37241 -26.93539 -25.74541 -23.21615 -22.26675 -21.63881 -20.77551 -19.15243 -18.31365 -17.55323 -17.04634 -16.75692 -16.14150 -15.75714 -15.50590 -15.13013 -14.68082 -14.53020 -14.31897 -13.86109 -13.81156 -13.57415 -13.25293 -13.05697 -12.75917 -12.69129 -12.40525 -12.25543 -12.20460 -11.99602 -11.59972 -11.54951 -11.48564 -11.13112 -11.07618 -10.60137 -10.21727 -9.40358 -8.54153 -8.15363 -6.01103 1.10856 1.18723 1.39997 1.53351 1.58961 2.27756 2.65004 2.84764 3.02839 3.57408 3.78555 3.87646 4.00017 4.24190 4.38043 4.44459 4.48829 4.50525 4.58206 4.59216 4.69303 4.71924 4.85528 4.96763 5.03911 5.06241 5.15631 5.18439 5.27156 5.29228 5.39413 5.45731 5.69750 5.81364 5.96502 6.19408 6.30845 6.39387 6.67166 6.87224 7.08761 7.14780 7.31672 8.49446 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.004265 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.699227 B = 6562.755606 C = 6609.232422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.080 3.920 4 H 0.083 0.917 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.137 4.137 8 C 0.153 3.847 9 H 0.056 0.944 10 N -0.742 5.742 11 C 0.116 3.884 12 C -0.165 4.165 13 C -0.195 4.195 14 C 0.035 3.965 15 C -0.506 4.506 16 H 0.068 0.932 17 C 0.031 3.969 18 N -0.845 5.845 19 Si 0.978 3.022 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.271 1.271 23 C -0.143 4.143 24 C -0.173 4.173 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.282 0.718 38 H 0.096 0.904 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 6.836 -12.371 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.022 3.978 4 H 0.100 0.900 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.176 4.176 8 C 0.046 3.954 9 H 0.074 0.926 10 N -0.376 5.376 11 C 0.016 3.984 12 C -0.188 4.188 13 C -0.215 4.215 14 C 0.032 3.968 15 C -0.538 4.538 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.473 5.473 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.183 1.183 22 H -0.196 1.196 23 C -0.163 4.163 24 C -0.195 4.195 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.230 0.770 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.761 6.337 -12.587 17.143 hybrid contribution 0.388 -0.206 0.799 0.912 sum -9.373 6.131 -11.788 16.260 Atomic orbital electron populations 1.22944 0.79636 1.03570 1.00804 1.87929 1.21428 1.28301 1.95095 1.23321 0.93523 0.84560 0.96416 0.89960 1.22868 0.99825 0.99303 0.95215 1.22230 0.96578 0.98269 0.97753 1.22599 0.98290 0.98993 0.97716 1.21407 0.94992 0.97302 0.81696 0.92607 1.43986 1.31163 1.56671 1.05769 1.17428 0.92924 0.98974 0.89048 1.20094 1.01574 1.05225 0.91867 1.20760 0.97053 1.05714 0.97962 1.17817 0.92767 0.93354 0.92835 1.19611 1.21720 1.06075 1.06378 0.91336 1.26632 1.00535 0.94496 0.96380 1.69938 1.37393 1.06460 1.33509 0.85264 0.77770 0.78056 0.78973 1.18964 1.18337 1.19564 1.20845 0.99835 1.02665 0.92946 1.20230 0.97783 1.03068 0.98413 0.89144 0.93786 0.92192 0.90898 0.89049 0.89977 0.90274 0.91855 0.92109 0.77013 0.86325 0.88403 0.90821 0.88564 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 113.37 1.23 1.73 16 2 O -0.41 -11.13 10.41 -148.98 -1.55 -12.68 16 3 C 0.08 1.90 3.05 31.67 0.10 1.99 16 4 H 0.08 1.69 7.41 -2.38 -0.02 1.67 16 5 C -0.13 -2.45 6.62 31.88 0.21 -2.24 16 6 C -0.11 -2.01 6.83 31.67 0.22 -1.79 16 7 C -0.14 -3.57 6.59 31.32 0.21 -3.36 16 8 C 0.15 4.62 2.68 45.71 0.12 4.74 16 9 H 0.06 2.07 6.32 -2.39 -0.02 2.05 16 10 N -0.74 -25.12 5.13 -315.13 -1.62 -26.74 16 11 C 0.12 5.06 6.67 38.67 0.26 5.31 16 12 C -0.17 -7.40 9.82 22.15 0.22 -7.18 16 13 C -0.19 -9.96 9.74 22.48 0.22 -9.74 16 14 C 0.04 2.01 5.57 -21.27 -0.12 1.89 16 15 C -0.51 -29.13 9.03 23.38 0.21 -28.92 16 16 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 17 C 0.03 1.68 5.14 85.22 0.44 2.12 16 18 N -0.84 -47.57 10.98 21.82 0.24 -47.33 16 19 Si 0.98 41.03 29.59 68.60 2.03 43.06 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C -0.14 -7.99 8.63 22.47 0.19 -7.80 16 24 C -0.17 -8.49 9.14 22.15 0.20 -8.29 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 0.79 8.11 -2.39 -0.02 0.77 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.06 1.82 7.92 -2.38 -0.02 1.80 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.39 11.37 8.35 -92.71 -0.77 10.60 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 38 H 0.10 5.68 6.20 -2.91 -0.02 5.67 16 39 H 0.10 4.54 6.18 -2.91 -0.02 4.53 16 Total: -1.00 -65.54 317.58 3.07 -62.46 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.26 Total: 32.75 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 3.70 Total: -51.53 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.38 Total: -74.06 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -1.55 Total: -12.68 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -65.54 3.07 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310496420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.515 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds