Wall clock time and date at job start Mon Mar 30 2020 07:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46719 * 2 1 4 4 C 1.52999 * 109.47515 * 120.00745 * 2 1 3 5 5 N 1.46494 * 109.46908 * 175.00275 * 4 2 1 6 6 C 1.37512 * 119.99793 * 179.97438 * 5 4 2 7 7 N 1.30332 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.37648 * 119.99985 * 180.02562 * 6 5 4 9 9 C 1.39887 * 120.00198 * 174.36032 * 8 6 5 10 10 C 1.39308 * 119.95171 * 146.39402 * 9 8 6 11 11 C 1.38478 * 120.42797 * 180.02562 * 10 9 8 12 12 C 1.37689 * 120.32388 * 0.25467 * 11 10 9 13 13 C 1.40751 * 119.88360 * 359.47432 * 12 11 10 14 14 C 1.41410 * 120.20734 * 180.29727 * 13 12 11 15 15 H 1.07994 * 119.99934 * 207.89565 * 14 13 12 16 16 C 1.39932 * 120.00059 * 27.89415 * 14 13 12 17 17 N 1.30830 * 119.99890 * 11.75245 * 16 14 13 18 18 Si 1.86802 * 119.99862 * 191.74882 * 16 14 13 19 19 H 1.48497 * 109.47086 * 90.00010 * 18 16 14 20 20 H 1.48495 * 109.47039 * 210.00364 * 18 16 14 21 21 H 1.48503 * 109.47112 * 330.00346 * 18 16 14 22 22 C 1.38252 * 119.94560 * 326.37301 * 9 8 6 23 23 H 1.09001 * 109.46778 * 299.99039 * 1 2 3 24 24 H 1.08993 * 109.47593 * 59.99580 * 1 2 3 25 25 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46778 * 240.00961 * 2 1 3 27 27 H 1.08995 * 109.47106 * 60.00785 * 3 2 1 28 28 H 1.09001 * 109.46897 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47573 * 300.00186 * 3 2 1 30 30 H 1.08995 * 109.46997 * 54.99854 * 4 2 1 31 31 H 1.09008 * 109.46552 * 294.99617 * 4 2 1 32 32 H 0.97001 * 120.00237 * 359.97438 * 5 4 2 33 33 H 0.97001 * 119.99741 * 0.02562 * 7 6 5 34 34 H 0.97001 * 120.00268 * 354.35352 * 8 6 5 35 35 H 1.08003 * 119.78750 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.84010 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.05936 * 179.74791 * 12 11 10 38 38 H 0.96999 * 119.99621 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.16319 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8264 1.1903 6 6 4.1869 -1.4406 2.2111 7 7 3.5389 -1.9288 3.2311 8 7 5.5588 -1.5388 2.1562 9 6 6.2672 -2.0563 3.2457 10 6 7.4281 -2.7962 3.0324 11 6 8.1368 -3.3136 4.1037 12 6 7.6983 -3.1065 5.3924 13 6 6.5301 -2.3562 5.6236 14 6 6.0770 -2.1341 6.9446 15 1 5.0253 -1.9808 7.1361 16 6 6.9914 -2.1128 8.0036 17 7 8.2757 -2.0671 7.7582 18 14 6.3783 -2.1497 9.7678 19 1 6.2631 -3.5586 10.2225 20 1 7.3367 -1.4247 10.6401 21 1 5.0475 -1.4949 9.8431 22 6 5.8143 -1.8325 4.5326 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6055 -1.7199 1.2949 31 1 1.7518 -0.1584 2.1369 32 1 3.9824 -0.4627 0.4314 33 1 2.5722 -1.8593 3.2700 34 1 6.0344 -1.2492 1.3619 35 1 7.7778 -2.9673 2.0250 36 1 9.0354 -3.8861 3.9274 37 1 8.2521 -3.5155 6.2246 38 1 8.9094 -2.0520 8.4924 39 1 4.9147 -1.2584 4.6991 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313429456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:59 Heat of formation + Delta-G solvation = 43.771734 kcal Electronic energy + Delta-G solvation = -18879.283607 eV Core-core repulsion = 16014.538293 eV Total energy + Delta-G solvation = -2864.745314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.93324 -37.49978 -35.87305 -33.81094 -32.52428 -30.62404 -29.53076 -27.94570 -27.47291 -25.73010 -25.05670 -21.38945 -20.65049 -20.47847 -19.47291 -17.79088 -17.13636 -16.06304 -15.48734 -15.15786 -14.57854 -14.49346 -14.28247 -13.97007 -13.44841 -13.20671 -12.86654 -12.69481 -12.43545 -12.20012 -11.90032 -11.45304 -11.37880 -11.19622 -11.03246 -11.02162 -10.82656 -10.58700 -10.30271 -9.82000 -9.34060 -9.09070 -8.78601 -8.55269 -7.78955 -7.20606 -6.59927 -6.41021 -4.17211 2.89053 3.03425 3.18298 3.22425 3.23642 3.35356 3.76944 4.09154 4.39885 4.46886 4.58258 4.75475 4.84971 5.23862 5.31237 5.38509 5.45890 5.54965 5.66594 5.77547 5.90740 5.94058 6.01710 6.21389 6.43569 6.58229 6.73720 6.97773 7.22391 7.31131 7.36054 7.52377 7.70823 7.93091 8.04477 8.21686 8.33620 8.51568 8.56411 8.87283 9.13279 9.18854 9.37759 10.41812 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.004226 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.343523 B = 6624.757003 C = 7456.667772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.148 4.148 4 C 0.137 3.863 5 N -0.779 5.779 6 C 0.624 3.376 7 N -0.791 5.791 8 N -0.666 5.666 9 C 0.178 3.822 10 C -0.264 4.264 11 C -0.097 4.097 12 C -0.173 4.173 13 C 0.117 3.883 14 C -0.458 4.458 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.807 5.807 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.191 4.191 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.385 0.615 33 H 0.327 0.673 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 4.750 -13.167 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.205 4.205 4 C 0.011 3.989 5 N -0.426 5.426 6 C 0.257 3.743 7 N -0.437 5.437 8 N -0.299 5.299 9 C 0.086 3.914 10 C -0.286 4.286 11 C -0.116 4.116 12 C -0.193 4.193 13 C 0.114 3.886 14 C -0.489 4.489 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.434 5.434 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.214 4.214 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.143 0.857 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.253 4.216 -11.991 15.722 hybrid contribution -0.476 0.695 -0.559 1.011 sum -9.728 4.912 -12.551 16.622 Atomic orbital electron populations 1.21771 0.94134 1.02173 1.02230 1.21282 0.96468 0.96712 0.97823 1.21854 1.01277 0.95447 1.01943 1.21212 0.79854 0.99765 0.98029 1.45513 1.06156 1.66421 1.24499 1.18922 0.84646 0.86746 0.83951 1.70182 1.13581 1.36118 1.23822 1.41342 1.01216 1.68662 1.18650 1.17178 0.92269 0.96351 0.85649 1.20015 1.01019 1.10651 0.96941 1.20409 0.97992 0.99918 0.93260 1.21356 1.00204 1.02765 0.94940 1.17514 0.90704 0.88027 0.92349 1.19550 0.94942 1.43399 0.91024 0.90617 1.25856 0.94507 0.92609 1.01269 1.69821 1.02141 1.37514 1.33879 0.86323 0.79563 0.79057 0.81742 1.19502 1.20555 1.18795 1.21089 1.03564 1.06712 0.90010 0.92254 0.92245 0.92342 0.90675 0.92371 0.92477 0.92602 0.92410 0.92254 0.78206 0.85728 0.76857 0.89781 0.89415 0.86408 0.91319 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.10 -0.81 2.96 -90.62 -0.27 -1.08 16 3 C -0.15 -1.13 9.07 37.16 0.34 -0.79 16 4 C 0.14 1.44 4.41 -4.05 -0.02 1.42 16 5 N -0.78 -9.71 5.40 -61.74 -0.33 -10.05 16 6 C 0.62 10.97 8.44 -319.83 -2.70 8.27 16 7 N -0.79 -16.01 10.78 30.19 0.33 -15.69 16 8 N -0.67 -12.29 5.45 -11.19 -0.06 -12.35 16 9 C 0.18 4.16 6.27 -83.78 -0.53 3.63 16 10 C -0.26 -6.07 9.97 -39.10 -0.39 -6.46 16 11 C -0.10 -2.36 10.02 -39.69 -0.40 -2.76 16 12 C -0.17 -4.70 8.66 -38.83 -0.34 -5.04 16 13 C 0.12 3.30 5.56 -106.85 -0.59 2.71 16 14 C -0.46 -12.94 9.06 -37.74 -0.34 -13.28 16 15 H 0.08 2.10 7.87 -52.49 -0.41 1.69 16 16 C 0.07 1.93 5.24 -17.34 -0.09 1.84 16 17 N -0.81 -21.81 10.83 55.55 0.60 -21.21 16 18 Si 0.91 19.79 29.58 -169.99 -5.03 14.76 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.19 -5.05 8.32 -38.68 -0.32 -5.37 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 7.18 -51.93 -0.37 0.08 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.64 7.97 -51.93 -0.41 0.22 16 31 H 0.06 0.68 7.97 -51.92 -0.41 0.26 16 32 H 0.38 3.94 7.76 -40.82 -0.32 3.62 16 33 H 0.33 5.85 7.15 -40.82 -0.29 5.56 16 34 H 0.40 5.90 8.92 -40.82 -0.36 5.53 16 35 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.31 6.18 -52.49 -0.32 2.98 16 38 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 39 H 0.12 3.09 6.30 -52.49 -0.33 2.76 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -30.81 321.10 -10.72 -41.53 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -5.76 Total: 15.71 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -5.31 Total: -17.55 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.53 Total: -59.29 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.81 -10.72 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313429456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.297 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds